Variant report

Variant	nsv1049240
Chromosome Location	chr15:56820899-56890478
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:56811740..56813746-chr15:56822934..56825907,2	K562	blood:
2	chr15:56817798..56822839-chr15:56825097..56828742,5	K562	blood:
3	chr15:56817798..56822286-chr15:56825097..56828742,4	K562	blood:
4	chr15:56817798..56822839-chr15:56825097..56828742,5	K562	blood:
5	chr15:56817798..56822286-chr15:56825097..56828742,4	K562	blood:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF280D-1	chr15:56840645-56840799	ENSG00000260392.1
2	lnc-ZNF280D-1	chr15:56840058-56840205	ENSG00000260392.1
3	lnc-ZNF280D-1	chr15:56841355-56841708	ENSG00000260392.1
4	lnc-ZNF280D-1	chr15:56835757-56836010	ENSG00000260392.1
5	lnc-ZNF280D-1	chr15:56835150-56835294	ENSG00000260392.1
6	lnc-ZNF280D-1	chr15:56840136-56840205	ENSG00000260392.1
7	lnc-ZNF280D-1	chr15:56841355-56841708	ENSG00000260392.1
8	lnc-ZNF280D-1	chr15:56884918-56885050	ENSG00000260392.1

No data

Extended variants
information (count: 1953 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:1953 , 50 per page) page: 1 2 3 4 5 6 7 ... 40

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs192853188	chr15:56820910-56820911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs75134288	chr15:56820912-56820913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs112286597	chr15:56820913-56820914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs78505178	chr15:56820919-56820920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs543448799	chr15:56820925-56820926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs535537507	chr15:56820926-56820927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs563249045	chr15:56820954-56820955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs703237	chr15:56821025-56821026	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
9	rs575486257	chr15:56821026-56821027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs12441530	chr15:56821098-56821099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs35236397	chr15:56821105-56821106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs184054256	chr15:56821158-56821159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs557780834	chr15:56821173-56821174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs541657303	chr15:56821181-56821182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs76031222	chr15:56821239-56821240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs12441573	chr15:56821270-56821271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs545880419	chr15:56821278-56821279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs187154393	chr15:56821302-56821303	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs528602444	chr15:56821363-56821364	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs374380075	chr15:56821378-56821379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs561980006	chr15:56821387-56821388	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs531025113	chr15:56821451-56821452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs59291418	chr15:56821509-56821510	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs554529666	chr15:56821550-56821551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs533636843	chr15:56821627-56821628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs371150446	chr15:56821638-56821639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs546321794	chr15:56821641-56821642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs566470402	chr15:56821672-56821673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs535570521	chr15:56821724-56821725	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs74624248	chr15:56821729-56821730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs568936138	chr15:56821756-56821757	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs528319759	chr15:56821774-56821775	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs537666825	chr15:56821788-56821789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs115231832	chr15:56821800-56821801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs191593637	chr15:56821840-56821841	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs534083481	chr15:56821844-56821845	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs553121713	chr15:56821850-56821851	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs374506997	chr15:56821882-56821883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs548354095	chr15:56821884-56821885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs541787623	chr15:56821917-56821918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs561869091	chr15:56821925-56821926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs183797627	chr15:56821949-56821950	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs544492182	chr15:56822027-56822028	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs376333722	chr15:56822051-56822052	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs703236	chr15:56822103-56822104	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs189135129	chr15:56822107-56822108	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs146106080	chr15:56822109-56822110	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs560223864	chr15:56822122-56822123	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs556918745	chr15:56822153-56822154	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs528908627	chr15:56822162-56822163	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Acute monocytic leukemia	16498392	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Gastric adenocarcinoma	19115996	CNVD
Congenital diaphragmatic hernia	21341218	CNVD
Holoprosencephaly	21359414	CNVD
Pancreatic cancer	17952125	CNVD
Glioblastoma multiforme	21510904	CNVD

Chromatin state (count:142 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56815800-56822000	Weak transcription	Thymus	Thymus
2	chr15:56818800-56822000	Weak transcription	Dnd41	blood
3	chr15:56820800-56824600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr15:56820800-56824600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:56822000-56824000	Enhancers	Dnd41	blood
6	chr15:56822000-56825000	Enhancers	Thymus	Thymus
7	chr15:56822000-56832200	Enhancers	Fetal Thymus	thymus
8	chr15:56822200-56822400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:56824000-56825000	Flanking Active TSS	Dnd41	blood
10	chr15:56824000-56826800	Enhancers	Fetal Muscle Leg	muscle
11	chr15:56824200-56824800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:56824400-56825200	Enhancers	Primary B cells from cord blood	blood
13	chr15:56824400-56827200	Enhancers	Fetal Brain Male	brain
14	chr15:56824600-56825600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:56824600-56825600	Enhancers	Brain Germinal Matrix	brain
16	chr15:56824600-56825800	Enhancers	HSMM	muscle
17	chr15:56824600-56827000	Enhancers	Stomach Smooth Muscle	stomach
18	chr15:56824800-56825000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:56824800-56825800	Enhancers	Primary T cells from cord blood	blood
20	chr15:56824800-56826400	Enhancers	Primary B cells from peripheral blood	blood
21	chr15:56824800-56826400	Enhancers	Rectal Smooth Muscle	rectum
22	chr15:56824800-56826400	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr15:56824800-56826600	Enhancers	Brain Anterior Caudate	brain
24	chr15:56824800-56826600	Enhancers	Fetal Brain Female	brain
25	chr15:56824800-56826600	Enhancers	HSMMtube	muscle
26	chr15:56824800-56830200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:56825000-56825400	Flanking Active TSS	Thymus	Thymus
28	chr15:56825000-56826000	Enhancers	Dnd41	blood
29	chr15:56825000-56826400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:56825000-56826400	Enhancers	Fetal Stomach	stomach
31	chr15:56825200-56825600	Flanking Active TSS	Primary B cells from cord blood	blood
32	chr15:56825200-56826200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:56825200-56826600	Enhancers	Brain Cingulate Gyrus	brain
34	chr15:56825400-56829800	Enhancers	Thymus	Thymus
35	chr15:56825600-56826000	Enhancers	Brain Hippocampus Middle	brain
36	chr15:56825600-56826400	Enhancers	Primary B cells from cord blood	blood
37	chr15:56825800-56826200	Weak transcription	Primary T cells from cord blood	blood
38	chr15:56825800-56830200	Weak transcription	HSMM	muscle
39	chr15:56826000-56826400	Flanking Active TSS	Dnd41	blood
40	chr15:56826000-56829400	Weak transcription	Brain Hippocampus Middle	brain
41	chr15:56826200-56826600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:56826200-56826800	Enhancers	Primary T cells from cord blood	blood
43	chr15:56826200-56827000	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr15:56826200-56829400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr15:56826400-56827200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:56826400-56829600	Enhancers	Dnd41	blood
47	chr15:56826400-56830000	Weak transcription	Primary B cells from peripheral blood	blood
48	chr15:56826400-56830200	Weak transcription	Primary B cells from cord blood	blood
49	chr15:56826600-56828800	Weak transcription	Brain Anterior Caudate	brain
50	chr15:56826600-56829200	Weak transcription	Brain Cingulate Gyrus	brain

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