Variant report

Variant	nsv1050179
Chromosome Location	chr11:25793308-25816730
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:11)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:25813617..25816295-chr11:25817467..25820329,2	K562	blood:

(count:11 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANO3-3	chr11:25802028-25802169	NONHSAT018451
2	lnc-ANO3-3	chr11:25803176-25803213	NONHSAT018451
3	lnc-ANO3-3	chr11:25799241-25799338	ENSG00000254456
4	lnc-ANO3-3	chr11:25802028-25802169	ENSG00000254456
5	lnc-ANO3-3	chr11:25802028-25802169	ENSG00000254456
6	lnc-ANO3-3	chr11:25803176-25803213	ENSG00000254456
7	lnc-ANO3-3	chr11:25799241-25799338	NONHSAT018451
8	lnc-ANO3-3	chr11:25795717-25795970	NONHSAT018451
9	lnc-ANO3-3	chr11:25803176-25803305	ENSG00000254456
10	lnc-ANO3-3	chr11:25795717-25795970	ENSG00000254456
11	lnc-ANO3-3	chr11:25799241-25799338	ENSG00000254456

No data

Extended variants
information (count: 133 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:133 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567921260	chr11:25795719-25795720	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs137947356	chr11:25795730-25795731	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs536171317	chr11:25795758-25795759	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs371526301	chr11:25795830-25795831	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs150915916	chr11:25795863-25795864	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs561759291	chr11:25795868-25795869	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs575409648	chr11:25795887-25795888	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs34034185	chr11:25795892-25795893	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs570183266	chr11:25798847-25798848	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs537733466	chr11:25798862-25798863	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs11028925	chr11:25798872-25798873	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs552074889	chr11:25798881-25798882	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs544629555	chr11:25798883-25798884	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs144659228	chr11:25798887-25798888	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs139642312	chr11:25798897-25798898	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs373185803	chr11:25798916-25798917	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs189522117	chr11:25798923-25798924	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs11028926	chr11:25798927-25798928	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs144270046	chr11:25799011-25799012	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs11028927	chr11:25799035-25799036	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs146740210	chr11:25799057-25799058	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs7127430	chr11:25799090-25799091	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs553450804	chr11:25799102-25799103	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs180767208	chr11:25799123-25799124	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs184927409	chr11:25799124-25799125	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs139292294	chr11:25799138-25799139	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs530110930	chr11:25799160-25799161	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs548309696	chr11:25799164-25799165	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs552957572	chr11:25799175-25799176	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs142593596	chr11:25799177-25799178	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs189308733	chr11:25799178-25799179	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs553776812	chr11:25799257-25799258	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs76304744	chr11:25799261-25799262	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs536339964	chr11:25799280-25799281	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs57735797	chr11:25799287-25799288	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs61745808	chr11:25799334-25799335	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs539368073	chr11:25802018-25802019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs66644014	chr11:25802039-25802040	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs546782451	chr11:25802073-25802074	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs4923303	chr11:25802075-25802076	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs573304090	chr11:25802081-25802082	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs532425391	chr11:25802095-25802096	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs4923304	chr11:25802096-25802097	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs555942963	chr11:25802105-25802106	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs574053581	chr11:25802107-25802108	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs569199815	chr11:25802131-25802132	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs183944670	chr11:25802134-25802135	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs188286655	chr11:25802143-25802144	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs192611190	chr11:25802154-25802155	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
50	rs556668748	chr11:25802164-25802165	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Myelofibrosis	22110671	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25798800-25799200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:25802000-25803800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:25802400-25802600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:25815800-25816800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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