Variant report

Variant	nsv1050715
Chromosome Location	chr12:12293072-12383820
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:731)
CpG islands
(count:62)
Chromatin interactive
region (count:41)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:731 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr12:12369904-12370283	K562	blood:	n/a	n/a
2	ARID3A	chr12:12320775-12321206	HepG2	liver:	n/a	n/a
3	ARID3A	chr12:12354491-12354691	K562	blood:	n/a	n/a
4	ARID3A	chr12:12359846-12359983	HepG2	liver:	n/a	n/a
5	ARID3A	chr12:12317942-12318276	HepG2	liver:	n/a	n/a
6	ARID3A	chr12:12369128-12369556	HepG2	liver:	n/a	n/a
7	ARID3A	chr12:12347191-12347512	HepG2	liver:	n/a	n/a
8	ARID3A	chr12:12369324-12369605	K562	blood:	n/a	n/a
9	ARID3A	chr12:12343148-12343828	K562	blood:	n/a	n/a
10	ARID3A	chr12:12377289-12377680	K562	blood:	n/a	n/a
11	ATF1	chr12:12343265-12343750	K562	blood:	n/a	n/a
12	ATF1	chr12:12354359-12354658	K562	blood:	n/a	n/a
13	ATF2	chr12:12354050-12354550	GM12878	blood:	n/a	n/a
14	ATF2	chr12:12377175-12377535	GM12878	blood:	n/a	n/a
15	ATF2	chr12:12324902-12325493	GM12878	blood:	n/a	n/a
16	ATF2	chr12:12324947-12325472	GM12878	blood:	n/a	n/a
17	ATF2	chr12:12377116-12377664	GM12878	blood:	n/a	n/a
18	ATF2	chr12:12329331-12329750	GM12878	blood:	n/a	n/a
19	ATF2	chr12:12354115-12354564	GM12878	blood:	n/a	n/a
20	BACH1	chr12:12369300-12369578	K562	blood:	n/a	n/a
21	BATF	chr12:12324953-12325495	GM12878	blood:	n/a	chr12:12325309-12325319
22	BATF	chr12:12377234-12377470	GM12878	blood:	n/a	chr12:12377379-12377390
23	BATF	chr12:12354117-12354567	GM12878	blood:	n/a	n/a
24	BATF	chr12:12369353-12369559	GM12878	blood:	n/a	chr12:12369470-12369481
25	BATF	chr12:12377170-12377567	GM12878	blood:	n/a	chr12:12377379-12377390
26	BATF	chr12:12354086-12354417	GM12878	blood:	n/a	n/a
27	BATF	chr12:12325015-12325494	GM12878	blood:	n/a	chr12:12325309-12325319
28	BCL11A	chr12:12324910-12325492	GM12878	blood:	n/a	n/a
29	BCL11A	chr12:12329378-12329725	GM12878	blood:	n/a	chr12:12329576-12329585
30	BCL11A	chr12:12354120-12354591	GM12878	blood:	n/a	n/a
31	BCL11A	chr12:12364043-12364271	GM12878	blood:	n/a	n/a
32	BCL11A	chr12:12324871-12325523	GM12878	blood:	n/a	n/a
33	BCL11A	chr12:12377253-12377490	GM12878	blood:	n/a	n/a
34	BCL11A	chr12:12329471-12329653	GM12878	blood:	n/a	chr12:12329576-12329585
35	BCL3	chr12:12377220-12377472	GM12878	blood:	n/a	n/a
36	BCL3	chr12:12369064-12370169	A549	lung:	n/a	n/a
37	BCL3	chr12:12320617-12321386	A549	lung:	n/a	n/a
38	BCLAF1	chr12:12354127-12354555	GM12878	blood:	n/a	n/a
39	BCLAF1	chr12:12324864-12325431	GM12878	blood:	n/a	n/a
40	BCLAF1	chr12:12329361-12329725	GM12878	blood:	n/a	chr12:12329576-12329585
41	BCLAF1	chr12:12324999-12325432	GM12878	blood:	n/a	n/a
42	BHLHE40	chr12:12377214-12377576	GM12878	blood:	n/a	n/a
43	BHLHE40	chr12:12324968-12325435	GM12878	blood:	n/a	n/a
44	BHLHE40	chr12:12343341-12343714	K562	blood:	n/a	n/a
45	BRCA1	chr12:12355889-12355915	H1-hESC	embryonic stem cell:	n/a	n/a
46	CCNT2	chr12:12343250-12343572	K562	blood:	n/a	chr12:12343324-12343344 chr12:12343429-12343449
47	CCNT2	chr12:12354389-12354692	K562	blood:	n/a	n/a
48	CEBPB	chr12:12333561-12334074	K562	blood:	n/a	chr12:12333701-12333712 chr12:12333700-12333713
49	CEBPB	chr12:12358993-12359166	A549	lung:	n/a	chr12:12359091-12359102
50	CEBPB	chr12:12346397-12346597	HepG2	liver:	n/a	chr12:12346517-12346528

(count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:12337461-12337511	CMK	blood:	n/a
2	chr12:12337461-12337511	CMK	blood:	n/a
3	chr12:12337461-12337511	HUVEC	blood vessel:	n/a
4	chr12:12337461-12337511	RPTEC	kidney:	n/a
5	chr12:12337461-12337511	HRE	kidney:	n/a
6	chr12:12337461-12337511	NHDF-neo	bronchial:	n/a
7	chr12:12337461-12337511	HCT-116	colon:	n/a
8	chr12:12337461-12337511	PrEC	prostate:	n/a
9	chr12:12337461-12337511	HCM	heart:	n/a
10	chr12:12337461-12337511	IMR90	lung:	fetal
11	chr12:12337461-12337511	A549	lung:	n/a
12	chr12:12337461-12337511	HEEpiC	esophagus:	n/a
13	chr12:12337461-12337511	ProgFib	skin:	n/a
14	chr12:12337461-12337511	GM06990	blood:	n/a
15	chr12:12337461-12337511	HEK293	kidney:	embryo
16	chr12:12337461-12337511	NT2-D1	testis:	n/a
17	chr12:12337461-12337511	LNCaP	prostate:	n/a
18	chr12:12337461-12337511	HL-60	blood:	n/a
19	chr12:12337461-12337511	K562	blood:	n/a
20	chr12:12337461-12337511	U87	brain:	n/a
21	chr12:12337461-12337511	HCF	heart:	n/a
22	chr12:12337461-12337511	PFSK-1	brain:	n/a
23	chr12:12337461-12337511	HPAEpiC	pulmonary alveolar:	n/a
24	chr12:12337461-12337511	BE2_C	brain:	n/a
25	chr12:12337461-12337511	AG10803	skin:	n/a
26	chr12:12337461-12337511	GM12892	blood:	n/a
27	chr12:12337461-12337511	Caco-2	colon:	n/a
28	chr12:12337461-12337511	HNPCEpiC	eye:	n/a
29	chr12:12337461-12337511	HMEC	breast:	n/a
30	chr12:12337461-12337511	ECC-1	luminal epithelium:	n/a
31	chr12:12337461-12337511	SK-N-SH	brain:	n/a
32	chr12:12337461-12337511	AG09309	skin:	n/a
33	chr12:12337461-12337511	MCF-7	breast:	n/a
34	chr12:12337461-12337511	NH-A	brain:	n/a
35	chr12:12337461-12337511	HAEpiC	amniotic membrane:	n/a
36	chr12:12337461-12337511	SKMC	muscle:	n/a
37	chr12:12337461-12337511	HepG2	liver:	n/a
38	chr12:12337461-12337511	Hela-S3	cervix:	n/a
39	chr12:12337461-12337511	BJ	skin:	n/a
40	chr12:12337461-12337511	NHBE	bronchial:	n/a
41	chr12:12337461-12337511	SAEC	small airway:	n/a
42	chr12:12337461-12337511	HRCEpiC	kidney:	n/a
43	chr12:12337461-12337511	T-47D	breast:	n/a
44	chr12:12337461-12337511	SK-N-MC	brain:	n/a
45	chr12:12337461-12337511	AG04449	skin:	fetal
46	chr12:12337461-12337511	MCF10A-Er-Src	breast:	n/a
47	chr12:12337461-12337511	AoSMC	blood vessel:	n/a
48	chr12:12337461-12337511	AG04450	lung:	fetal
49	chr12:12337461-12337511	AG09319	gingival:	n/a
50	chr12:12337461-12337511	ovcar-3	ovarian:	n/a

(count:41 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:12311196..12313408-chr12:12319093..12320757,2	K562	blood:
2	chr12:12305442..12307716-chr12:12320693..12322842,2	MCF-7	breast:
3	chr12:12373050..12374895-chr12:12377294..12378845,2	MCF-7	breast:
4	chr12:12339319..12341570-chr12:12343366..12345378,2	K562	blood:
5	chr12:12323664..12325480-chr12:12418997..12421104,2	MCF-7	breast:
6	chr12:12339319..12341570-chr12:12343366..12345378,2	K562	blood:
7	chr12:12353652..12355834-chr12:12365732..12367284,2	K562	blood:
8	chr12:12360154..12361666-chr12:12367455..12370218,2	K562	blood:
9	chr12:12296863..12299099-chr12:12301647..12304445,2	MCF-7	breast:
10	chr12:12360154..12361666-chr12:12367455..12370218,2	K562	blood:
11	chr12:12333575..12335738-chr12:12341960..12344629,2	K562	blood:
12	chr12:12315377..12318046-chr12:12335015..12337960,2	K562	blood:
13	chr12:12317349..12320437-chr12:12321643..12324297,3	MCF-7	breast:
14	chr12:12329160..12332545-chr12:12419382..12422512,4	MCF-7	breast:
15	chr12:12321589..12323162-chr12:12323164..12326099,2	K562	blood:
16	chr12:12317242..12319657-chr12:12322207..12324128,2	K562	blood:
17	chr12:12321589..12323162-chr12:12323164..12326099,2	K562	blood:
18	chr12:12317242..12319657-chr12:12322207..12324128,2	K562	blood:
19	chr12:12358286..12360439-chr12:12418199..12420506,2	MCF-7	breast:
20	chr12:12381851..12384074-chr12:12419779..12421401,2	K562	blood:
21	chr12:12364652..12366406-chr12:12369471..12371207,2	K562	blood:
22	chr12:12353652..12355834-chr12:12365732..12367284,2	K562	blood:
23	chr12:12316415..12318730-chr12:12419208..12421283,2	MCF-7	breast:
24	chr12:12347779..12350511-chr12:12354038..12356966,2	MCF-7	breast:
25	chr12:12315377..12318046-chr12:12335015..12337960,2	K562	blood:
26	chr12:12287758..12289771-chr12:12301948..12304913,2	MCF-7	breast:
27	chr12:12296345..12298153-chr12:12419480..12421377,2	MCF-7	breast:
28	chr12:12305442..12307716-chr12:12320693..12322842,2	MCF-7	breast:
29	chr12:12333575..12335738-chr12:12341960..12344629,2	K562	blood:
30	chr12:12363448..12365440-chr12:12418661..12421807,3	MCF-7	breast:
31	chr12:12369208..12371594-chr12:12405892..12408383,3	K562	blood:
32	chr12:12317349..12320437-chr12:12321643..12324297,3	MCF-7	breast:
33	chr12:12310500..12312178-chr12:12419652..12422450,2	K562	blood:
34	chr12:12364652..12367428-chr12:12369707..12372537,2	K562	blood:
35	chr12:12373050..12374895-chr12:12377294..12378845,2	MCF-7	breast:
36	chr12:12296863..12299099-chr12:12301647..12304445,2	MCF-7	breast:
37	chr12:12378227..12379810-chr12:12418939..12421766,2	K562	blood:
38	chr12:12311196..12313408-chr12:12319093..12320757,2	K562	blood:
39	chr12:12364652..12367428-chr12:12369707..12372537,2	K562	blood:
40	chr12:12336035..12338491-chr12:12459842..12461495,2	K562	blood:
41	chr12:12364652..12366406-chr12:12369471..12371207,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LOH12CR1-6	chr12:12308196-12308706	NONHSAT026964

No data

Variant related genes	Relation type
RNU6-545P	TF binding region
LRP6	TF binding region
ENSG00000242405	TF binding region
RNU6-545P	CpG island
LRP6	CpG island
ENSG00000242405	CpG island
ENSG00000070018	chromatin interactions

Extended variants
information (count: 3563 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:3563 , 50 per page) page: 1 2 3 4 5 6 7 ... 72

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7139259	chr12:12293072-12293073	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs574176546	chr12:12293130-12293131	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs542718359	chr12:12293150-12293151	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs537403440	chr12:12293171-12293172	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs140383428	chr12:12293199-12293200	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs561927260	chr12:12293226-12293227	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs370601671	chr12:12293309-12293310	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs73053359	chr12:12293316-12293317	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs541312938	chr12:12293330-12293331	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs368887660	chr12:12293346-12293347	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs557737237	chr12:12293386-12293387	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs545214157	chr12:12293451-12293452	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs144888689	chr12:12293519-12293520	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs186431232	chr12:12293520-12293521	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs527445063	chr12:12293523-12293524	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs145009698	chr12:12293540-12293541	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs543551115	chr12:12293541-12293542	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs67340003	chr12:12293543-12293544	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs561518880	chr12:12293544-12293545	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs528924642	chr12:12293546-12293547	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs373792312	chr12:12293561-12293562	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs189666321	chr12:12293588-12293589	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs533118664	chr12:12293607-12293608	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs551288088	chr12:12293614-12293615	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs182300327	chr12:12293631-12293632	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs2160521	chr12:12293638-12293639	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs7310632	chr12:12293683-12293684	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs78340098	chr12:12293694-12293695	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs202208498	chr12:12293751-12293752	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs534721379	chr12:12293782-12293783	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs553219274	chr12:12293805-12293806	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs186894031	chr12:12293808-12293809	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs538802099	chr12:12293834-12293835	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs200468464	chr12:12293847-12293848	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs34122301	chr12:12293848-12293849	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs571281686	chr12:12293862-12293863	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs562917205	chr12:12293907-12293908	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs557269957	chr12:12293929-12293930	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs138706597	chr12:12293943-12293944	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs548763309	chr12:12293961-12293962	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs575992185	chr12:12293989-12293990	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs543129486	chr12:12294008-12294009	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs561842915	chr12:12294022-12294023	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs35589377	chr12:12294075-12294076	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs573643964	chr12:12294087-12294088	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs541035220	chr12:12294146-12294147	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs566267514	chr12:12294178-12294179	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs559637871	chr12:12294189-12294190	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs533259569	chr12:12294194-12294195	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs551692260	chr12:12294210-12294211	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Acute lymphoblastic leukemia	17690704	CNVD
Medulloblastoma	16968546	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Hepatocellular carcinoma	16750200	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Breast cancer	22032731	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	21965145	CNVD
Acute myeloid leukemia	16864856	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Disorders of sex development	21048976	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Prostate cancer	19156837	CNVD
Emphysema	19352772	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Malignant germ cell tumour	17285132	CNVD
Melanoma	18172304	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Breast cancer	21264507	CNVD
Cancer	16751803	CNVD
Testicular cancer	18059402	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Seminomas	18059402	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Testicular germ cell tumor	18059402	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	21858162	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21785460	CNVD
Myelodysplastic syndrome	21251322	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Cancer	20164919	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21611746	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Squamous cell cancer	19607727	CNVD
Prostate cancer	16573809	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Glioblastoma multiforme	22286061	CNVD
Acute myeloid leukemia	17268525	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Melanoma	20877625	CNVD
Ovarian cancer	21781307	CNVD

Chromatin state (count:2056 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12261600-12301400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr12:12262400-12335600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr12:12263800-12314600	Weak transcription	Esophagus	oesophagus
4	chr12:12264000-12301400	Weak transcription	Right Ventricle	heart
5	chr12:12264400-12311400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr12:12265600-12303400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr12:12267800-12301600	Weak transcription	NHLF	lung
8	chr12:12268800-12301600	Weak transcription	Brain Substantia Nigra	brain
9	chr12:12269600-12343200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:12271000-12301600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr12:12271400-12306600	Weak transcription	Small Intestine	intestine
12	chr12:12271600-12294200	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr12:12272200-12344600	Weak transcription	Primary B cells from cord blood	blood
14	chr12:12272400-12325200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr12:12272600-12305000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr12:12273600-12301600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr12:12274600-12313600	Weak transcription	Colonic Mucosa	Colon
18	chr12:12275000-12303400	Weak transcription	GM12878-XiMat	blood
19	chr12:12277400-12306800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr12:12277600-12311600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr12:12278200-12299200	Weak transcription	Brain Hippocampus Middle	brain
22	chr12:12278200-12301400	Weak transcription	Placenta	Placenta
23	chr12:12278200-12310600	Weak transcription	Hela-S3	cervix
24	chr12:12279200-12294200	Weak transcription	Brain Angular Gyrus	brain
25	chr12:12279200-12299000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr12:12279600-12301400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr12:12279800-12294000	Weak transcription	Brain Anterior Caudate	brain
28	chr12:12279800-12300000	Weak transcription	HUVEC	blood vessel
29	chr12:12279800-12303600	Weak transcription	Fetal Brain Male	brain
30	chr12:12279800-12311000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr12:12279800-12311000	Weak transcription	HMEC	breast
32	chr12:12279800-12311600	Weak transcription	Dnd41	blood
33	chr12:12279800-12313800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr12:12279800-12342800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr12:12280000-12299200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr12:12280000-12301600	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr12:12280000-12301600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr12:12280000-12302600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr12:12280000-12303400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr12:12280400-12299600	Weak transcription	Osteobl	bone
41	chr12:12280600-12300000	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr12:12280600-12301600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr12:12281400-12301600	Weak transcription	Left Ventricle	heart
44	chr12:12281800-12335600	Weak transcription	Psoas Muscle	Psoas
45	chr12:12282400-12298800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr12:12282400-12299000	Weak transcription	Adipose Nuclei	Adipose
47	chr12:12282400-12299200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr12:12282400-12300000	Weak transcription	Primary T cells from cord blood	blood
49	chr12:12283000-12299400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr12:12283200-12303400	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links