Variant report

Variant	nsv1051641
Chromosome Location	chr12:60986661-61161174
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:61082989..61083868-chr12:61821155..61821770,3	MCF-7	breast:
2	chr12:60998461..61000426-chr12:61001994..61004254,2	K562	blood:
3	chr12:61083057..61084756-chr12:61085691..61088224,2	MCF-7	breast:
4	chr12:61087880..61090655-chr12:61091873..61094363,2	MCF-7	breast:
5	chr12:61095133..61097553-chr12:61097984..61100105,2	MCF-7	breast:
6	chr12:61068552..61070950-chr12:61071562..61073630,2	K562	blood:
7	chr12:61057349..61058143-chr8:92718418..92719083,2	MCF-7	breast:
8	chr12:61018293..61020271-chr12:61020721..61022454,2	MCF-7	breast:
9	chr12:61083057..61084756-chr12:61085691..61088224,2	MCF-7	breast:
10	chr12:61068552..61070950-chr12:61071562..61073630,2	K562	blood:
11	chr12:61018293..61020271-chr12:61020721..61022454,2	MCF-7	breast:
12	chr12:60998461..61000426-chr12:61001994..61004254,2	K562	blood:
13	chr12:61087880..61090655-chr12:61091873..61094363,2	MCF-7	breast:
14	chr12:61095133..61097553-chr12:61097984..61100105,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC16A7-7	chr12:61089153-61089356	expReg_chr12_6482_+

No data

Extended variants
information (count: 993 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:993 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs570867066	chr12:60987801-60987802	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs533622206	chr12:60987814-60987815	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs547339865	chr12:60987820-60987821	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs567036365	chr12:60987857-60987858	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs116581350	chr12:60987900-60987901	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs185895167	chr12:60987910-60987911	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs2455855	chr12:60987918-60987919	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs537193174	chr12:60987919-60987920	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs11838061	chr12:60987945-60987946	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs370100285	chr12:60987990-60987991	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs58992439	chr12:60988004-60988005	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs191479204	chr12:60988024-60988025	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs112292441	chr12:60988025-60988026	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs373048175	chr12:60988051-60988052	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs552830433	chr12:60988077-60988078	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs573117504	chr12:60988104-60988105	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs537281697	chr12:60988112-60988113	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs561958892	chr12:60988121-60988122	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs75953475	chr12:60988166-60988167	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs117452996	chr12:60988172-60988173	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs61925033	chr12:60988175-60988176	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs141081863	chr12:60988190-60988191	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs181756697	chr12:60988236-60988237	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs150274670	chr12:60988262-60988263	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs138506821	chr12:60988382-60988383	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs567031242	chr12:60988390-60988391	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs529641438	chr12:60988392-60988393	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs549304496	chr12:60988410-60988411	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs78160521	chr12:60988436-60988437	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs545080036	chr12:60988437-60988438	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs569446861	chr12:60988453-60988454	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs536703112	chr12:60988468-60988469	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs564551103	chr12:60988481-60988482	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs571659076	chr12:60988500-60988501	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs539562847	chr12:60988512-60988513	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs570245697	chr12:60988519-60988520	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs539021859	chr12:60988525-60988526	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs552593467	chr12:60988551-60988552	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs573044997	chr12:60988555-60988556	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs141533045	chr12:60988568-60988569	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs555223334	chr12:60988584-60988585	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs146196594	chr12:60988608-60988609	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs540946782	chr12:60988609-60988610	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs114416034	chr12:60988616-60988617	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs137931275	chr12:60988697-60988698	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs578164035	chr12:60988711-60988712	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs540631356	chr12:60988718-60988719	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs73371312	chr12:60988739-60988740	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs115932728	chr12:60988769-60988770	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs149491489	chr12:60988828-60988829	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ewing''s sarcoma	21437220	CNVD
Testicular germ cell tumor	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Neurodevelopmental disorder	22521361	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	21949216	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Glioblastoma multiforme	21080181	CNVD
Renal cell carcinoma	19461508	CNVD
Burkitt''s lymphoma	18698080	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lissencephaly	21572526	CNVD
Lung cancer	18438408	CNVD
Breast cancer	19602461	CNVD
Breast cancer	17899364	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Glioblastoma multiforme	17387387	CNVD
liposarcomas	17372913	CNVD
Non-small cell lung cancer	24170126	CNVD
Cancer	16751803	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21785460	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Urothelial cell carcinoma	18451213	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	21390271	CNVD
Cancer	20164919	CNVD
Leukemia	18628472	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Myelofibrosis	22110671	CNVD
Phyllodes tumor	17334353	CNVD
Glaucoma	21310917	CNVD
Breast cancer	16272173	CNVD
Mental retardation	19951919	CNVD
Glaucoma	21447600	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Developmental delay	21267005	CNVD
12q14 microdeletion syndrome	21267005	CNVD
Developmental delay	19277063	CNVD
Dwarfism	19277063	CNVD
Fibroblasts	20926602	CNVD
Follicular lymphoma	18703704	CNVD
Acute myeloid leukemia	21251322	CNVD
Glioblastoma multiforme	20080666	CNVD
Medulloblastoma	19270706	CNVD
Breast cancer	17133270	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Glioblastoma	17090523	CNVD
Multiple myeloma	16616336	CNVD
Lung cancer	16773561	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Breast cancer	21364760	CNVD
Pancreatic cancer	17952125	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60987800-60988800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:60988800-60994800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:60994800-60995200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:61017000-61020400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:61021400-61022200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr12:61023000-61023800	Enhancers	Hela-S3	cervix
7	chr12:61029800-61030200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:61037000-61037400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:61038400-61039200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr12:61041000-61041200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:61063800-61064600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr12:61064400-61065600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr12:61064400-61065600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr12:61064600-61065200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr12:61065200-61065600	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr12:61065800-61066000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr12:61066600-61067200	Enhancers	Brain Germinal Matrix	brain
18	chr12:61067200-61068600	Weak transcription	Brain Germinal Matrix	brain
19	chr12:61068600-61069400	Enhancers	Brain Germinal Matrix	brain
20	chr12:61097800-61098600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr12:61104200-61106800	Enhancers	Colon Smooth Muscle	Colon
22	chr12:61133600-61134200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
23	chr12:61134200-61134800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr12:61139000-61139200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr12:61146200-61147000	Enhancers	Dnd41	blood
26	chr12:61153800-61155200	Enhancers	Dnd41	blood

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