Variant report

Variant	nsv1051840
Chromosome Location	chr10:6398966-6411469
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:6337874..6340921-chr10:6402269..6405461,3	MCF-7	breast:
2	chr10:6395156..6397284-chr10:6402218..6404124,2	K562	blood:
3	chr10:6398255..6400919-chr10:6404280..6406836,2	MCF-7	breast:
4	chr10:6244771..6246608-chr10:6406133..6408869,3	MCF-7	breast:
5	chr10:6398255..6400919-chr10:6404280..6406836,2	MCF-7	breast:
6	chr10:6400244..6402480-chr10:6406686..6408396,2	MCF-7	breast:
7	chr10:6400244..6402480-chr10:6406686..6408396,2	MCF-7	breast:
8	chr10:6243793..6245448-chr10:6404864..6407182,2	MCF-7	breast:
9	chr10:6339998..6340580-chr10:6405184..6406141,2	MCF-7	breast:
10	chr10:6364749..6366254-chr10:6407399..6408916,2	MCF-7	breast:
11	chr10:6405295..6407901-chr10:6440170..6443280,3	MCF-7	breast:
12	chr10:6409324..6412633-chr10:6424291..6427904,3	MCF-7	breast:
13	chr10:6204481..6206489-chr10:6404115..6406824,2	MCF-7	breast:
14	chr10:6338433..6344348-chr10:6402915..6408706,10	MCF-7	breast:
15	chr10:6243591..6245237-chr10:6402745..6405970,3	MCF-7	breast:
16	chr10:6407311..6409448-chr10:6446152..6447736,2	MCF-7	breast:
17	chr10:6273175..6275381-chr10:6405443..6408001,2	MCF-7	breast:
18	chr10:6395424..6398413-chr10:6402841..6405147,2	K562	blood:
19	chr10:6409518..6411373-chr10:6428852..6430851,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL137145.1-7	chr10:6408557-6408611	l_250_chr10:6408556-6410104_lung
2	lnc-AL137145.1-7	chr10:6409900-6410104	l_250_chr10:6408556-6410104_lung

No data

Variant related genes	Relation type
ENSG00000170525	chromatin interactions
ENSG00000213994	chromatin interactions

Extended variants
information (count: 513 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:513 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs111467301	chr10:6398989-6398990	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs147015116	chr10:6399004-6399005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs368340885	chr10:6399017-6399018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs558672070	chr10:6399022-6399023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs577021612	chr10:6399024-6399025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs138014602	chr10:6399061-6399062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs535442545	chr10:6399064-6399065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs371082794	chr10:6399070-6399071	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs545443408	chr10:6399082-6399083	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs542576575	chr10:6399095-6399096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs563844498	chr10:6399100-6399101	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs192266378	chr10:6399112-6399113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs149518781	chr10:6399113-6399114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs113570389	chr10:6399114-6399115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs148124943	chr10:6399142-6399143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs546666011	chr10:6399175-6399176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs568148532	chr10:6399176-6399177	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs368761474	chr10:6399191-6399192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs142864392	chr10:6399193-6399194	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs569855664	chr10:6399195-6399196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs370345195	chr10:6399199-6399200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs537310066	chr10:6399203-6399204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs184009466	chr10:6399235-6399236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs574204408	chr10:6399272-6399273	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs577109559	chr10:6399298-6399299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs187313185	chr10:6399307-6399308	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs553089617	chr10:6399356-6399357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs11258264	chr10:6399357-6399358	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs541485089	chr10:6399371-6399372	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs556871050	chr10:6399439-6399440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs558018711	chr10:6399466-6399467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs573118234	chr10:6399490-6399491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs11499261	chr10:6399511-6399512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs375078452	chr10:6399520-6399521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs368314577	chr10:6399525-6399526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs564364935	chr10:6399545-6399546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs528644680	chr10:6399559-6399560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs540390855	chr10:6399584-6399585	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs561866988	chr10:6399596-6399597	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs529299609	chr10:6399611-6399612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs372137154	chr10:6399637-6399638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs11499262	chr10:6399679-6399680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs556372845	chr10:6399688-6399689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs376682856	chr10:6399694-6399695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs61841879	chr10:6399703-6399704	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs530759735	chr10:6399706-6399707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs370008045	chr10:6399709-6399710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs576528017	chr10:6399729-6399730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs570696301	chr10:6399769-6399770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs61841880	chr10:6399793-6399794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Cancer	21129771	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Renal cell carcinoma	18765545	CNVD
lymphocytic leukemia	21291569	CNVD
Urothelial cell carcinoma	18451213	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Myxofibrosarcoma	16751306	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6396800-6410800	Weak transcription	Aorta	Aorta
2	chr10:6397600-6403400	Weak transcription	Pancreas	Pancrea
3	chr10:6398000-6403200	Weak transcription	Left Ventricle	heart
4	chr10:6402400-6405600	Weak transcription	Stomach Mucosa	stomach
5	chr10:6402600-6403000	ZNF genes & repeats	A549	lung
6	chr10:6402600-6405000	Weak transcription	Psoas Muscle	Psoas
7	chr10:6403000-6403200	Weak transcription	Ovary	ovary
8	chr10:6403000-6406800	Weak transcription	A549	lung
9	chr10:6403000-6407000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr10:6403200-6403400	ZNF genes & repeats	Ovary	ovary
11	chr10:6403200-6403800	ZNF genes & repeats	Left Ventricle	heart
12	chr10:6403400-6403600	ZNF genes & repeats	Adipose Nuclei	Adipose
13	chr10:6403400-6403600	Enhancers	Gastric	stomach
14	chr10:6403400-6403600	Enhancers	Pancreas	Pancrea
15	chr10:6403400-6410200	Weak transcription	Ovary	ovary
16	chr10:6403600-6405400	Weak transcription	Adipose Nuclei	Adipose
17	chr10:6403600-6407000	Weak transcription	Pancreas	Pancrea
18	chr10:6403800-6404000	Enhancers	Liver	Liver
19	chr10:6403800-6405600	Weak transcription	Gastric	stomach
20	chr10:6404000-6405600	Weak transcription	Liver	Liver
21	chr10:6404800-6405600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr10:6404800-6406200	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr10:6405000-6405400	Enhancers	Fetal Intestine Small	intestine
24	chr10:6405000-6406200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr10:6405400-6405800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:6405400-6405800	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr10:6405400-6405800	Enhancers	Adipose Nuclei	Adipose
28	chr10:6405400-6406200	Weak transcription	Fetal Intestine Small	intestine
29	chr10:6405600-6405800	Enhancers	Liver	Liver
30	chr10:6405600-6406000	Enhancers	Stomach Mucosa	stomach
31	chr10:6405600-6407200	Enhancers	Gastric	stomach
32	chr10:6405800-6406800	Weak transcription	Liver	Liver
33	chr10:6406000-6406600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:6406000-6407000	Weak transcription	Stomach Mucosa	stomach
35	chr10:6406200-6406600	Enhancers	Fetal Intestine Large	intestine
36	chr10:6406200-6406600	ZNF genes & repeats	Fetal Intestine Small	intestine
37	chr10:6406200-6409800	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr10:6406600-6406800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:6406600-6407600	Weak transcription	Fetal Intestine Small	intestine
40	chr10:6406800-6407400	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr10:6406800-6407400	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr10:6406800-6407400	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr10:6406800-6407800	Enhancers	Liver	Liver
44	chr10:6406800-6407800	Enhancers	Fetal Heart	heart
45	chr10:6406800-6408000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr10:6406800-6408000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:6406800-6408000	Enhancers	A549	lung
48	chr10:6406800-6408200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:6406800-6408600	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr10:6406800-6409200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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