Variant report

Variant	nsv1052135
Chromosome Location	chr14:66674584-66843126
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:66747427..66750412-chr14:66751043..66753662,3	MCF-7	breast:
2	chr14:66709204..66711912-chr14:66719252..66721670,2	MCF-7	breast:
3	chr14:66725117..66725617-chr3:38044558..38045262,2	MCF-7	breast:
4	chr14:66825773..66826732-chr14:66861672..66862671,3	MCF-7	breast:
5	chr14:66696991..66699499-chr14:66704656..66706344,2	MCF-7	breast:
6	chr14:66729166..66732128-chr14:66733699..66735617,2	K562	blood:
7	chr14:66825542..66826429-chr14:66862069..66862684,3	MCF-7	breast:
8	chr14:66691660..66694411-chr14:66704319..66706775,2	MCF-7	breast:
9	chr14:66709204..66711912-chr14:66719252..66721670,2	MCF-7	breast:
10	chr14:66831468..66833127-chr14:67617476..67620347,2	MCF-7	breast:
11	chr14:66691660..66694411-chr14:66704319..66706775,2	MCF-7	breast:
12	chr14:66735910..66737746-chr14:66747875..66749421,2	MCF-7	breast:
13	chr14:66702275..66703801-chr2:238394869..238397413,2	MCF-7	breast:
14	chr14:66826294..66826807-chr14:66869300..66870066,2	NB4	blood:
15	chr14:66735910..66737746-chr14:66747875..66749421,2	MCF-7	breast:
16	chr14:66826252..66826789-chr14:66844012..66844547,2	MCF-7	breast:
17	chr11:36171264..36171928-chr14:66734278..66734780,2	MCF-7	breast:
18	chr14:66729166..66732128-chr14:66733699..66735617,2	K562	blood:
19	chr14:66747427..66750412-chr14:66751043..66753662,3	MCF-7	breast:
20	chr14:66696991..66699499-chr14:66704656..66706344,2	MCF-7	breast:
21	chr14:66826086..66826716-chr14:66868369..66868913,2	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPHN-3	chr14:66734293-66734727	NONHSAT037416
2	lnc-CTD-2014B16.3.1-2	chr14:66679528-66679823	ENSG00000258561
3	lnc-CTD-2014B16.3.1-2	chr14:66680617-66680669	ENSG00000258561
4	lnc-CTD-2014B16.3.1-2	chr14:66715924-66715952	ENSG00000258561
5	lnc-CTD-2014B16.3.1-2	chr14:66697051-66697613	ENSG00000258561
6	lnc-GPHN-3	chr14:66830511-66830686	NONHSAT037416

No data

Variant related genes	Relation type
ENSG00000115648	chromatin interactions

Extended variants
information (count: 3703 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:3703 , 50 per page) page: 1 2 3 4 5 6 7 ... 75

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs543503507	chr14:66674588-66674589	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs570926956	chr14:66674605-66674606	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs376301125	chr14:66674606-66674607	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs539717960	chr14:66674671-66674672	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs546982108	chr14:66674704-66674705	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs567015353	chr14:66674706-66674707	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs535712872	chr14:66674749-66674750	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs115935937	chr14:66674765-66674766	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs575840046	chr14:66674795-66674796	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs180875232	chr14:66674852-66674853	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs558153878	chr14:66674853-66674854	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs116291104	chr14:66674881-66674882	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs547425697	chr14:66674948-66674949	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs540479363	chr14:66674966-66674967	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs577737923	chr14:66674978-66674979	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs573776164	chr14:66674980-66674981	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs567993502	chr14:66674996-66674997	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs113363079	chr14:66675082-66675083	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs542484727	chr14:66675083-66675084	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs562227958	chr14:66675097-66675098	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs559961532	chr14:66675106-66675107	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs79861135	chr14:66675113-66675114	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs55985959	chr14:66675148-66675149	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs564495381	chr14:66675222-66675223	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs186451507	chr14:66675305-66675306	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs142318071	chr14:66675330-66675331	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs61243054	chr14:66675341-66675342	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs189308884	chr14:66675358-66675359	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs79616000	chr14:66675429-66675430	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs551307272	chr14:66675477-66675478	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs558567622	chr14:66675485-66675486	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs146184243	chr14:66675538-66675539	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs538293447	chr14:66675549-66675550	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs182042536	chr14:66675586-66675587	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs138627045	chr14:66675589-66675590	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs186883218	chr14:66675594-66675595	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs191773018	chr14:66675605-66675606	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs149303487	chr14:66675677-66675678	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs144562951	chr14:66675750-66675751	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs373535685	chr14:66675784-66675785	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs370168320	chr14:66675794-66675795	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs115992377	chr14:66675878-66675879	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs74056974	chr14:66675899-66675900	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs562314287	chr14:66676013-66676014	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs565735136	chr14:66676014-66676015	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs555917925	chr14:66676066-66676067	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs116951265	chr14:66676069-66676070	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs144623152	chr14:66676086-66676087	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs34478894	chr14:66676126-66676127	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs10654203	chr14:66676127-66676128	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Chronic myeloid leukemia	20724749	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Colorectal cancer	16272173	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Breast cancer	22032731	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16774939	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	17603634	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Neuroblastoma	18923191	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Barrett''s syndrome	19417022	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	21364760	CNVD
Breast cancer	17133270	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	20164920	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Cancer	17440070	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
early-passage human iPS cells	21368824	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD

Chromatin state (count:284 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66672800-66688000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:66682800-66683000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:66682800-66683200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:66690800-66691400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr14:66691200-66691800	Enhancers	Stomach Mucosa	stomach
6	chr14:66691400-66696000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:66693600-66695400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:66694800-66695600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr14:66694800-66695600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr14:66694800-66695800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:66694800-66696000	Enhancers	HMEC	breast
12	chr14:66695000-66695600	Enhancers	NHEK	skin
13	chr14:66695400-66696000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr14:66695800-66698400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr14:66696000-66696400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:66696200-66696800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr14:66696800-66697400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr14:66697200-66697800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr14:66697400-66699400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr14:66697800-66701000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr14:66698200-66698400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
22	chr14:66698400-66698800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr14:66698400-66699200	Enhancers	Primary B cells from cord blood	blood
24	chr14:66698600-66699400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
25	chr14:66699400-66700800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr14:66699800-66701200	Enhancers	Lung	lung
27	chr14:66700000-66700200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr14:66700000-66701400	Enhancers	Fetal Stomach	stomach
29	chr14:66700800-66704800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr14:66701000-66701200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr14:66701000-66701800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr14:66701000-66701800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr14:66701200-66704000	Weak transcription	Lung	lung
34	chr14:66701800-66702000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr14:66701800-66702200	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr14:66701800-66704600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr14:66704000-66707200	Enhancers	Brain Germinal Matrix	brain
38	chr14:66704200-66704600	Enhancers	Fetal Brain Female	brain
39	chr14:66704200-66707400	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr14:66704400-66704600	Enhancers	Lung	lung
41	chr14:66704600-66704800	Enhancers	Brain Cingulate Gyrus	brain
42	chr14:66704600-66705400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr14:66704600-66706600	Enhancers	Adipose Nuclei	Adipose
44	chr14:66704600-66707000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr14:66704600-66708400	Weak transcription	Fetal Brain Female	brain
46	chr14:66704800-66705200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr14:66704800-66705600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr14:66704800-66707000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr14:66705200-66707400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr14:66705400-66705600	Enhancers	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links