Variant report

Variant	nsv1052555
Chromosome Location	chr13:87087605-87134263
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:86748899..86749431-chr13:87116065..87116706,2	MCF-7	breast:
2	chr13:86659406..86660238-chr13:87098032..87098996,2	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK6-13	chr13:87121092-87121362	NONHSAT034578
2	lnc-SLITRK6-13	chr13:87121092-87121515	NONHSAT034577
3	lnc-SLITRK6-13	chr13:87121092-87121529	l_895_chr13:87064439-87121529_brain
4	lnc-SLITRK6-13	chr13:87121092-87121219	NONHSAT034575

No data

Extended variants
information (count: 666 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:666 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs79868113	chr13:87090025-87090026	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs553207967	chr13:87090036-87090037	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs184975411	chr13:87090064-87090065	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs188067767	chr13:87090103-87090104	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs539883980	chr13:87090204-87090205	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs181023641	chr13:87090227-87090228	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs35254449	chr13:87090298-87090299	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs374294159	chr13:87090331-87090332	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs187365226	chr13:87090333-87090334	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs542302963	chr13:87090338-87090339	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs924634	chr13:87090400-87090401	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs202202037	chr13:87090407-87090408	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs572611574	chr13:87090438-87090439	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs558701105	chr13:87090484-87090485	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs9519268	chr13:87090490-87090491	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs192130290	chr13:87090508-87090509	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs147094538	chr13:87090531-87090532	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs183482045	chr13:87090539-87090540	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs138261426	chr13:87090572-87090573	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs374231470	chr13:87090576-87090577	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs530097281	chr13:87090585-87090586	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs149597646	chr13:87090609-87090610	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs543440447	chr13:87090710-87090711	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs566925694	chr13:87090716-87090717	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs527809290	chr13:87090781-87090782	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs144281888	chr13:87090794-87090795	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs186120330	chr13:87090796-87090797	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs201721486	chr13:87090798-87090799	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs386773028	chr13:87090799-87090800	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs9558274	chr13:87090805-87090806	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs571451255	chr13:87090828-87090829	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs554706458	chr13:87090839-87090840	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs148311405	chr13:87090916-87090917	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs538484469	chr13:87090937-87090938	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs550848140	chr13:87090942-87090943	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs574773788	chr13:87090949-87090950	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs569095673	chr13:87090969-87090970	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs563451542	chr13:87090986-87090987	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs190101693	chr13:87091010-87091011	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs554269207	chr13:87091018-87091019	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs540586948	chr13:87091042-87091043	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs572572507	chr13:87091053-87091054	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs533630896	chr13:87091062-87091063	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs529182855	chr13:87091070-87091071	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs577021361	chr13:87091075-87091076	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs544521168	chr13:87091085-87091086	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs182742444	chr13:87091121-87091122	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs563157421	chr13:87091124-87091125	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs66846950	chr13:87091153-87091154	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs549225082	chr13:87091158-87091159	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Cancer	17160897	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Non-small cell lung cancer	16651412	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87090000-87091000	Enhancers	Hela-S3	cervix
2	chr13:87090000-87091400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr13:87090000-87092400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:87090200-87091600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:87091400-87091800	Enhancers	Placenta Amnion	Placenta Amnion
6	chr13:87092400-87096200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr13:87096200-87096600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:87096600-87098000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:87097400-87098000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:87097600-87098600	Enhancers	NH-A	brain
11	chr13:87097800-87099000	Enhancers	Hela-S3	cervix
12	chr13:87097800-87099200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:87098000-87098400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr13:87098000-87099000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr13:87098000-87099000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr13:87098000-87099000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr13:87098000-87099200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr13:87098000-87099800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr13:87098000-87100000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr13:87098200-87099000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr13:87098200-87099000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr13:87098400-87098800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr13:87098400-87098800	Enhancers	Fetal Lung	lung
24	chr13:87098400-87099000	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr13:87098400-87099400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr13:87098600-87099000	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr13:87098800-87099800	Weak transcription	Fetal Lung	lung
28	chr13:87098800-87102800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr13:87099800-87100000	Enhancers	Fetal Lung	lung
30	chr13:87105200-87105600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr13:87116400-87117200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr13:87116800-87117000	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr13:87117200-87118200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr13:87117200-87118200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr13:87118200-87118600	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr13:87118200-87118600	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr13:87118200-87118800	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr13:87118200-87118800	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr13:87118400-87118600	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr13:87129000-87129200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr13:87129000-87129200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr13:87134200-87134800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr13:87134200-87134800	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr13:87134200-87135600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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