Variant report

Variant	nsv1052578
Chromosome Location	chr10:96538082-96641949
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:114)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:114 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:96610998-96611149	K562	blood:	n/a	chr10:96611099-96611110
2	CEBPB	chr10:96581454-96581783	HepG2	liver:	n/a	chr10:96581633-96581644
3	CEBPB	chr10:96610925-96611288	HepG2	liver:	n/a	chr10:96611099-96611110
4	CEBPB	chr10:96610935-96611206	A549	lung:	n/a	chr10:96611099-96611110
5	CEBPB	chr10:96610933-96611257	IMR90	lung:	n/a	chr10:96611099-96611110
6	CEBPB	chr10:96581486-96581791	A549	lung:	n/a	chr10:96581633-96581644
7	CEBPB	chr10:96543674-96543868	A549	lung:	n/a	chr10:96543736-96543747
8	CEBPB	chr10:96543674-96543836	HepG2	liver:	n/a	chr10:96543736-96543747
9	CTCF	chr10:96618977-96619055	MCF-7	breast:	n/a	n/a
10	CTCF	chr10:96639691-96639881	H1-hESC	embryonic stem cell:	n/a	n/a
11	CTCF	chr10:96639640-96639790	GM12864	blood:	n/a	n/a
12	CTCF	chr10:96563126-96563151	HepG2	liver:	n/a	n/a
13	CTCF	chr10:96621754-96621802	LNCaP	prostate:	n/a	n/a
14	CTCF	chr10:96639300-96639450	RPTEC	kidney:	n/a	n/a
15	CTCF	chr10:96570817-96570874	GM13976	blood:	n/a	n/a
16	CTCF	chr10:96639640-96639790	RPTEC	kidney:	n/a	n/a
17	CTCF	chr10:96639720-96639870	GM12872	blood:	n/a	n/a
18	CTCF	chr10:96639700-96639850	RPTEC	kidney:	n/a	n/a
19	CTCF	chr10:96596395-96596418	LNCaP	prostate:	n/a	n/a
20	CTCF	chr10:96639680-96639830	HepG2	liver:	n/a	n/a
21	CTCF	chr10:96562980-96563130	RPTEC	kidney:	n/a	n/a
22	CTCF	chr10:96563100-96563250	MCF-7	breast:	n/a	n/a
23	CTCF	chr10:96626963-96627063	LNCaP	prostate:	n/a	n/a
24	CTCF	chr10:96639813-96639932	K562	blood:	n/a	n/a
25	CTCF	chr10:96563080-96563230	RPTEC	kidney:	n/a	n/a
26	CTCF	chr10:96552160-96552310	Hela-S3	cervix:	n/a	n/a
27	CTCF	chr10:96577722-96577829	Kidney_OC	kidney:	n/a	n/a
28	EBF1	chr10:96639243-96639597	GM12878	blood:	n/a	chr10:96639444-96639455
29	FOS	chr10:96545074-96545211	MCF10A-Er-Src	breast:	n/a	n/a
30	FOS	chr10:96545059-96545259	MCF10A-Er-Src	breast:	n/a	n/a
31	FOXA1	chr10:96617803-96618108	HepG2	liver:	n/a	n/a
32	FOXA1	chr10:96537776-96538168	HepG2	liver:	n/a	n/a
33	FOXA1	chr10:96617847-96618109	HepG2	liver:	n/a	n/a
34	FOXA1	chr10:96537827-96538112	HepG2	liver:	n/a	n/a
35	FOXA1	chr10:96537732-96538220	HepG2	liver:	n/a	n/a
36	FOXA1	chr10:96617840-96618063	HepG2	liver:	n/a	n/a
37	FOXA1	chr10:96537765-96538162	HepG2	liver:	n/a	n/a
38	FOXA1	chr10:96617826-96618060	HepG2	liver:	n/a	n/a
39	FOXA1	chr10:96537857-96538090	A549	lung:	n/a	n/a
40	FOXA1	chr10:96573127-96573504	HepG2	liver:	n/a	n/a
41	FOXA2	chr10:96589603-96590374	A549	lung:	n/a	n/a
42	FOXA2	chr10:96573131-96573566	A549	lung:	n/a	n/a
43	FOXA2	chr10:96625312-96625519	HepG2	liver:	n/a	n/a
44	FOXA2	chr10:96617805-96618067	A549	lung:	n/a	n/a
45	FOXA2	chr10:96617867-96618101	HepG2	liver:	n/a	n/a
46	FOXA2	chr10:96537753-96538278	A549	lung:	n/a	n/a
47	FOXA2	chr10:96573170-96573685	A549	lung:	n/a	n/a
48	FOXA2	chr10:96537890-96538150	HepG2	liver:	n/a	n/a
49	FOXA2	chr10:96589749-96590130	A549	lung:	n/a	n/a
50	GATA2	chr10:96605747-96606010	HUVEC	blood vessel:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CYP2C8-4	chr10:96625946-96626096	NONHSAT015740
2	lnc-CYP2C8-4	chr10:96632715-96632886	NONHSAT015740
3	lnc-CYP2C8-4	chr10:96625609-96625760	NONHSAT015740

No data

Variant related genes	Relation type
CYP2C58P	TF binding region
ENSG00000225354	TF binding region
MTND4P19	TF binding region

Extended variants
information (count: 5196 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:5196 , 50 per page) page: 1 2 3 4 5 6 7 ... 104

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs531300239	chr10:96538085-96538086	Genic enhancers Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs181713174	chr10:96538086-96538087	Genic enhancers Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs564315711	chr10:96538116-96538117	Genic enhancers Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs533607438	chr10:96538119-96538120	Genic enhancers Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs187630050	chr10:96538124-96538125	Genic enhancers Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs551643273	chr10:96538133-96538134	Genic enhancers Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs529224833	chr10:96538139-96538140	Genic enhancers Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs116618873	chr10:96538150-96538151	Genic enhancers Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs547462145	chr10:96538157-96538158	Genic enhancers Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs538320243	chr10:96538162-96538163	Genic enhancers Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs558319393	chr10:96538179-96538180	Genic enhancers Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs571321745	chr10:96538187-96538188	Genic enhancers Weak transcription Enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs534015863	chr10:96538205-96538206	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs566866673	chr10:96538233-96538234	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs370671642	chr10:96538267-96538268	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs553738519	chr10:96538273-96538274	Strong transcription Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs191904831	chr10:96538284-96538285	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs182384943	chr10:96538316-96538317	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs185195737	chr10:96538347-96538348	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs372150082	chr10:96538349-96538350	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs575656514	chr10:96538361-96538362	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs544686007	chr10:96538406-96538407	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs564651895	chr10:96538418-96538419	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs139742547	chr10:96538447-96538448	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs540823021	chr10:96538464-96538465	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs190313352	chr10:96538465-96538466	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs386746697	chr10:96538475-96538476	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs533932111	chr10:96538491-96538492	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs529582292	chr10:96538513-96538514	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs112729369	chr10:96538519-96538520	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs116121534	chr10:96538548-96538549	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs531755160	chr10:96538570-96538571	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs76232651	chr10:96538572-96538573	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs571718163	chr10:96538601-96538602	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs533709547	chr10:96538608-96538609	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs148600337	chr10:96538639-96538640	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs567398849	chr10:96538641-96538642	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs536115837	chr10:96538668-96538669	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs7919524	chr10:96538714-96538715	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
40	rs575595192	chr10:96538798-96538799	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs112885210	chr10:96538817-96538818	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs565868892	chr10:96538842-96538843	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs561847460	chr10:96538847-96538848	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs7078494	chr10:96538851-96538852	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs140308159	chr10:96538862-96538863	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs570276301	chr10:96538876-96538877	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs376534275	chr10:96538897-96538898	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs187532815	chr10:96538927-96538928	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs116323773	chr10:96538951-96538952	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs531692810	chr10:96538982-96538983	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Intracranial aneurysm	16715129	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:138 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96525600-96539400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:96533000-96564600	Weak transcription	Gastric	stomach
3	chr10:96537600-96538200	Enhancers	Fetal Intestine Large	intestine
4	chr10:96537800-96538200	Genic enhancers	Liver	Liver
5	chr10:96537800-96538200	Enhancers	Stomach Mucosa	stomach
6	chr10:96537800-96538200	Enhancers	HepG2	liver
7	chr10:96538000-96553400	Weak transcription	Fetal Intestine Small	intestine
8	chr10:96538200-96540400	Weak transcription	Fetal Intestine Large	intestine
9	chr10:96538200-96541400	Weak transcription	Stomach Mucosa	stomach
10	chr10:96538200-96543800	Strong transcription	Liver	Liver
11	chr10:96539400-96540800	Strong transcription	Duodenum Mucosa	Duodenum
12	chr10:96540400-96542200	Strong transcription	Fetal Intestine Large	intestine
13	chr10:96540800-96547800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr10:96542200-96545400	Weak transcription	Fetal Intestine Large	intestine
15	chr10:96543800-96545200	Weak transcription	Liver	Liver
16	chr10:96545200-96549400	Strong transcription	Liver	Liver
17	chr10:96545400-96546000	Strong transcription	Fetal Intestine Large	intestine
18	chr10:96546000-96553600	Weak transcription	Fetal Intestine Large	intestine
19	chr10:96547800-96548600	Strong transcription	Duodenum Mucosa	Duodenum
20	chr10:96548600-96552800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr10:96549400-96550200	Weak transcription	Liver	Liver
22	chr10:96550200-96550400	Strong transcription	Liver	Liver
23	chr10:96550400-96552000	Weak transcription	Liver	Liver
24	chr10:96552000-96554600	Strong transcription	Liver	Liver
25	chr10:96552800-96554200	Strong transcription	Duodenum Mucosa	Duodenum
26	chr10:96553400-96554200	ZNF genes & repeats	Fetal Intestine Small	intestine
27	chr10:96553600-96554200	ZNF genes & repeats	Fetal Intestine Large	intestine
28	chr10:96554200-96560000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr10:96554200-96560000	Weak transcription	Fetal Intestine Small	intestine
30	chr10:96554200-96560400	Weak transcription	Fetal Intestine Large	intestine
31	chr10:96554600-96560000	Weak transcription	Liver	Liver
32	chr10:96560000-96560800	Genic enhancers	Liver	Liver
33	chr10:96560000-96561200	ZNF genes & repeats	Fetal Intestine Small	intestine
34	chr10:96560000-96562200	Strong transcription	Duodenum Mucosa	Duodenum
35	chr10:96560400-96564600	Strong transcription	Fetal Intestine Large	intestine
36	chr10:96560800-96566200	Strong transcription	Liver	Liver
37	chr10:96561600-96562000	ZNF genes & repeats	Fetal Intestine Small	intestine
38	chr10:96562000-96563200	Weak transcription	Fetal Intestine Small	intestine
39	chr10:96562200-96563000	Weak transcription	Duodenum Mucosa	Duodenum
40	chr10:96563000-96564400	Strong transcription	Duodenum Mucosa	Duodenum
41	chr10:96563200-96563600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr10:96563200-96563800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr10:96563200-96564400	Strong transcription	Fetal Intestine Small	intestine
44	chr10:96564400-96565400	Weak transcription	Fetal Intestine Small	intestine
45	chr10:96564400-96565600	Weak transcription	Duodenum Mucosa	Duodenum
46	chr10:96564600-96565400	Weak transcription	Fetal Intestine Large	intestine
47	chr10:96565400-96565800	Strong transcription	Fetal Intestine Large	intestine
48	chr10:96565400-96565800	ZNF genes & repeats	Fetal Intestine Small	intestine
49	chr10:96565600-96565800	Strong transcription	Duodenum Mucosa	Duodenum
50	chr10:96565800-96566000	ZNF genes & repeats	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links