Variant report

Variant	nsv1052829
Chromosome Location	chr11:107686808-107725297
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:30)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:30 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:107720451..107722516-chr11:107723737..107725547,2	K562	blood:
2	chr11:107693861..107695588-chr11:107701609..107703172,2	K562	blood:
3	chr11:107720451..107722516-chr11:107723737..107725547,2	K562	blood:
4	chr11:107705879..107708165-chr11:107709790..107712179,2	K562	blood:
5	chr11:107691036..107695039-chr11:107696173..107700652,4	K562	blood:
6	chr11:107716345..107718524-chr11:107728424..107730206,2	K562	blood:
7	chr11:107724074..107726361-chr11:107732414..107734385,2	K562	blood:
8	chr11:107670081..107670628-chr11:107695151..107695710,2	K562	blood:
9	chr11:107717688..107720633-chr11:107727875..107730541,3	MCF-7	breast:
10	chr11:107701670..107703248-chr11:107728191..107729812,2	MCF-7	breast:
11	chr11:107716345..107719089-chr11:107728424..107730844,2	K562	blood:
12	chr11:107722496..107727212-chr11:107727549..107730508,5	K562	blood:
13	chr11:107715556..107718513-chr11:107720703..107722662,2	K562	blood:
14	chr11:107719290..107725550-chr11:107725808..107730435,7	MCF-7	breast:
15	chr11:107691036..107695039-chr11:107696173..107700652,4	K562	blood:
16	chr11:107719420..107722219-chr11:107728105..107729908,3	K562	blood:
17	chr11:107693861..107695588-chr11:107701609..107703172,2	K562	blood:
18	chr11:107693680..107695656-chr11:107699193..107701857,2	MCF-7	breast:
19	chr11:107705879..107708165-chr11:107709790..107712179,2	K562	blood:
20	chr11:107723077..107725574-chr11:107732885..107735452,2	K562	blood:
21	chr11:107689319..107691586-chr11:107728240..107730113,3	MCF-7	breast:
22	chr11:107711008..107711755-chr20:47663245..47663778,2	Hela-S3	cervix:
23	chr11:107691714..107693795-chr11:107728602..107730312,2	MCF-7	breast:
24	chr11:107709816..107713345-chr11:107727610..107729677,4	MCF-7	breast:
25	chr11:107711394..107713234-chr11:107715059..107718295,3	K562	blood:
26	chr11:107711394..107713234-chr11:107715059..107718295,3	K562	blood:
27	chr11:107715556..107718513-chr11:107720703..107722662,2	K562	blood:
28	chr11:107724102..107726025-chr11:107793740..107795283,2	K562	blood:
29	chr11:107693680..107695656-chr11:107699193..107701857,2	MCF-7	breast:
30	chr11:107713214..107715442-chr11:107878460..107880889,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000166266	chromatin interactions
ENSG00000110660	chromatin interactions

Extended variants
information (count: 1640 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:1640 , 50 per page) page: 1 2 3 4 5 6 7 ... 33

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs376859576	chr11:107686808-107686809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs7941406	chr11:107686836-107686837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs144497223	chr11:107686848-107686849	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs554741708	chr11:107686851-107686852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs569638726	chr11:107686858-107686859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs537067605	chr11:107686877-107686878	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs559249719	chr11:107686882-107686883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs577475364	chr11:107686979-107686980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs541749224	chr11:107686989-107686990	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs368795744	chr11:107686993-107686994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs369238513	chr11:107686994-107686995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs72313181	chr11:107686997-107686998	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs375839800	chr11:107687008-107687009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs386757277	chr11:107687010-107687011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs575003091	chr11:107687016-107687017	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs541904292	chr11:107687017-107687018	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs563457190	chr11:107687030-107687031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs562763	chr11:107687046-107687047	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs182376502	chr11:107687060-107687061	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs2442687	chr11:107687065-107687066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs545795000	chr11:107687067-107687068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs143556770	chr11:107687089-107687090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs80342253	chr11:107687132-107687133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs386374818	chr11:107687174-107687175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs5794572	chr11:107687193-107687194	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs561669	chr11:107687196-107687197	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs572122378	chr11:107687213-107687214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs12793143	chr11:107687229-107687230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs146791027	chr11:107687257-107687258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs367851768	chr11:107687297-107687298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs565722719	chr11:107687304-107687305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs73001540	chr11:107687313-107687314	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs545827947	chr11:107687343-107687344	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs548281990	chr11:107687373-107687374	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs536155432	chr11:107687416-107687417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs140657864	chr11:107687435-107687436	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs73001542	chr11:107687489-107687490	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs537007145	chr11:107687557-107687558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs551874715	chr11:107687567-107687568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs140476484	chr11:107687586-107687587	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs534982987	chr11:107687598-107687599	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs187988249	chr11:107687645-107687646	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs574900649	chr11:107687647-107687648	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs191126963	chr11:107687769-107687770	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs556988704	chr11:107687799-107687800	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs183437738	chr11:107687800-107687801	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs377000413	chr11:107687808-107687809	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs189117371	chr11:107687813-107687814	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs188175066	chr11:107687830-107687831	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs564302236	chr11:107687846-107687847	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:101)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Obesity	19966786	CNVD
Renal cell carcinoma	21668985	CNVD
Cancer	20164920	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Attention deficit hyperactivity disorder	19546859	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:676 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107661000-107693200	Weak transcription	Spleen	Spleen
2	chr11:107661800-107691800	Weak transcription	Esophagus	oesophagus
3	chr11:107663200-107690200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:107672000-107697000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:107672800-107687800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:107673400-107727800	Weak transcription	Primary B cells from cord blood	blood
7	chr11:107673600-107689800	Weak transcription	HMEC	breast
8	chr11:107674400-107691800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:107676400-107690000	Weak transcription	A549	lung
10	chr11:107676400-107694200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:107677800-107689600	Weak transcription	NH-A	brain
12	chr11:107677800-107691800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:107679000-107687600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:107679000-107691600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:107679000-107696400	Weak transcription	Lung	lung
16	chr11:107679600-107691800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:107680000-107687400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr11:107681000-107687200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr11:107682600-107690000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:107682600-107695200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:107682600-107695400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:107683200-107689600	Weak transcription	HUVEC	blood vessel
23	chr11:107683400-107701600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr11:107684600-107690000	Weak transcription	GM12878-XiMat	blood
25	chr11:107684800-107690000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:107684800-107692400	Weak transcription	K562	blood
27	chr11:107684800-107695200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr11:107685000-107690000	Weak transcription	NHEK	skin
29	chr11:107685000-107690200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:107685000-107690400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:107685600-107692200	Weak transcription	Duodenum Mucosa	Duodenum
32	chr11:107685600-107695400	Weak transcription	Primary B cells from peripheral blood	blood
33	chr11:107686400-107690200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:107687600-107688400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:107688400-107689600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:107689600-107690800	Enhancers	NH-A	brain
37	chr11:107689600-107691800	Enhancers	HUVEC	blood vessel
38	chr11:107689600-107692000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr11:107689800-107690400	Enhancers	Placenta Amnion	Placenta Amnion
40	chr11:107689800-107690600	Enhancers	HMEC	breast
41	chr11:107690000-107690200	ZNF genes & repeats	GM12878-XiMat	blood
42	chr11:107690000-107690600	Enhancers	A549	lung
43	chr11:107690000-107690800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:107690000-107691000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:107690000-107693600	Enhancers	NHEK	skin
46	chr11:107690200-107690400	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr11:107690200-107690600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:107690200-107690800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:107690200-107694200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr11:107690200-107695200	Weak transcription	GM12878-XiMat	blood

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