Variant report

Variant	nsv1053284
Chromosome Location	chr12:84485769-84710310
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:579)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:5)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:579 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr12:84666195-84666238	K562	blood:	n/a	n/a
2	BACH1	chr12:84703758-84703952	H1-hESC	embryonic stem cell:	n/a	n/a
3	CEBPB	chr12:84575678-84575942	H1-hESC	embryonic stem cell:	n/a	chr12:84575790-84575801
4	CEBPB	chr12:84705099-84705356	HepG2	liver:	n/a	n/a
5	CEBPB	chr12:84575615-84575954	HepG2	liver:	n/a	chr12:84575790-84575801
6	CEBPB	chr12:84530683-84531231	Hela-S3	cervix:	n/a	n/a
7	CEBPB	chr12:84566658-84566951	HepG2	liver:	n/a	n/a
8	CEBPB	chr12:84575648-84575974	IMR90	lung:	n/a	chr12:84575790-84575801
9	CEBPB	chr12:84612283-84612492	A549	lung:	n/a	chr12:84612397-84612410
10	CEBPB	chr12:84566641-84566838	K562	blood:	n/a	n/a
11	CEBPB	chr12:84612277-84612494	MCF-7	breast:	n/a	chr12:84612397-84612410
12	CEBPB	chr12:84566621-84566945	Hela-S3	cervix:	n/a	n/a
13	CEBPB	chr12:84530794-84531271	A549	lung:	n/a	n/a
14	CEBPB	chr12:84530968-84531251	A549	lung:	n/a	n/a
15	CEBPB	chr12:84566633-84566888	H1-hESC	embryonic stem cell:	n/a	n/a
16	CEBPB	chr12:84566615-84566974	ECC-1	luminal epithelium:	n/a	n/a
17	CEBPB	chr12:84524869-84525284	IMR90	lung:	n/a	chr12:84525007-84525019
18	CEBPB	chr12:84575641-84575858	A549	lung:	n/a	chr12:84575790-84575801
19	CEBPB	chr12:84508374-84508677	HepG2	liver:	n/a	chr12:84508538-84508549
20	CEBPB	chr12:84530710-84531247	IMR90	lung:	n/a	n/a
21	CEBPB	chr12:84530938-84531227	A549	lung:	n/a	n/a
22	CEBPB	chr12:84508382-84508565	H1-hESC	embryonic stem cell:	n/a	chr12:84508538-84508549
23	CEBPB	chr12:84497837-84498179	Hela-S3	cervix:	n/a	n/a
24	CTCF	chr12:84624180-84624330	HepG2	liver:	n/a	n/a
25	CTCF	chr12:84511860-84512010	MCF-7	breast:	n/a	n/a
26	CTCF	chr12:84555260-84555410	AG09319	gingival:	n/a	n/a
27	CTCF	chr12:84501500-84501650	HMEC	breast:	n/a	n/a
28	CTCF	chr12:84555220-84555370	AG09319	gingival:	n/a	n/a
29	CTCF	chr12:84624200-84624350	HRPEpiC	eye:	n/a	n/a
30	CTCF	chr12:84634420-84634570	HCPEpiC	choroid plexus:	n/a	n/a
31	CTCF	chr12:84501515-84501558	HepG2	liver:	n/a	n/a
32	CTCF	chr12:84509040-84509190	BE2_C	brain:	n/a	n/a
33	CTCF	chr12:84501525-84501533	K562	blood:	n/a	n/a
34	CTCF	chr12:84634360-84634510	BJ	skin:	n/a	n/a
35	CTCF	chr12:84501460-84501610	MCF-7	breast:	n/a	n/a
36	CTCF	chr12:84567817-84567880	Fibrobl	skin:	n/a	n/a
37	CTCF	chr12:84566972-84567047	MCF-7	breast:	n/a	n/a
38	CTCF	chr12:84634200-84634350	AG04450	lung:	n/a	n/a
39	CTCF	chr12:84548500-84548598	GM13976	blood:	n/a	n/a
40	CTCF	chr12:84566942-84567001	MCF-7	breast:	n/a	n/a
41	CTCF	chr12:84574150-84574183	Lung_OC	lung:	n/a	n/a
42	CTCF	chr12:84509100-84509250	HMF	breast:	n/a	n/a
43	CTCF	chr12:84493501-84493577	Spleen_OC	spleen:	n/a	n/a
44	CTCF	chr12:84529184-84529209	GM10248	blood:	n/a	n/a
45	CTCF	chr12:84634320-84634470	AG04450	lung:	n/a	n/a
46	CTCF	chr12:84665861-84665952	LNCaP	prostate:	n/a	n/a
47	CTCF	chr12:84501420-84501570	HEK293	kidney:	n/a	n/a
48	CTCF	chr12:84511920-84512070	A549	lung:	n/a	n/a
49	CTCF	chr12:84497808-84497930	Lung_OC	lung:	n/a	n/a
50	CTCF	chr12:84624160-84624310	HEK293	kidney:	n/a	n/a

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:84596837..84598758-chr12:84604233..84606547,2	MCF-7	breast:
2	chr12:84592646..84594505-chr12:84594640..84596287,2	MCF-7	breast:
3	chr12:84611922..84614915-chr12:84630882..84632480,2	MCF-7	breast:
4	chr12:84596837..84598758-chr12:84604233..84606547,2	MCF-7	breast:
5	chr12:84611922..84614915-chr12:84630882..84632480,2	MCF-7	breast:
6	chr12:84615761..84617587-chr14:52985387..52988384,2	MCF-7	breast:
7	chr12:84677376..84680215-chr12:84681765..84683893,2	K562	blood:
8	chr12:84520118..84522589-chr2:133488049..133489903,2	MCF-7	breast:
9	chr12:83366836..83369224-chr12:84561366..84563438,2	MCF-7	breast:
10	chr12:84592646..84594505-chr12:84594640..84596287,2	MCF-7	breast:
11	chr12:84600531..84602051-chr6:31495165..31496871,2	K562	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRRIQ1-2	chr12:84688089-84688335	ENSG00000257729
2	lnc-LRRIQ1-2	chr12:84665119-84665185	ENSG00000257729
3	lnc-LRRIQ1-2	chr12:84687707-84687920	ENSG00000257729
4	lnc-LRRIQ1-2	chr12:84688089-84688341	ENSG00000257729
5	lnc-LRRIQ1-2	chr12:84678170-84678273	ENSG00000257729

No data

Variant related genes	Relation type
ENSG00000221148	TF binding region
ENSG00000257729	TF binding region
ENSG00000204511	chromatin interactions
ENSG00000225499	chromatin interactions
ENSG00000257729	chromatin interactions

Extended variants
information (count: 2757 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:2757 , 50 per page) page: 1 2 3 4 5 6 7 ... 56

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs573433084	chr12:84485809-84485810	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs115368049	chr12:84485839-84485840	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs555084184	chr12:84485848-84485849	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs563960017	chr12:84485859-84485860	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs573540567	chr12:84485869-84485870	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs117102865	chr12:84485898-84485899	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs562239557	chr12:84485993-84485994	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs543443076	chr12:84486018-84486019	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs116022060	chr12:84486036-84486037	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs368001434	chr12:84486066-84486067	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs544790164	chr12:84486128-84486129	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs560044141	chr12:84486196-84486197	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs527614257	chr12:84486207-84486208	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs117271059	chr12:84486223-84486224	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs561948887	chr12:84486243-84486244	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs371810481	chr12:84486266-84486267	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs148646793	chr12:84486276-84486277	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs1351604	chr12:84486287-84486288	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs75847502	chr12:84486302-84486303	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs552023425	chr12:84486307-84486308	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs567019512	chr12:84486321-84486322	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs534233774	chr12:84486355-84486356	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs141599580	chr12:84486436-84486437	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs567196948	chr12:84486458-84486459	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs537440053	chr12:84486486-84486487	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs547159787	chr12:84486506-84486507	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs146249648	chr12:84486509-84486510	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs577297530	chr12:84486562-84486563	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs12304319	chr12:84486647-84486648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs73155573	chr12:84486659-84486660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs4882407	chr12:84486711-84486712	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs542562779	chr12:84486721-84486722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs139252794	chr12:84486741-84486742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs529302923	chr12:84486754-84486755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs544593626	chr12:84486788-84486789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs11116203	chr12:84486792-84486793	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs113391003	chr12:84486797-84486798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs551857607	chr12:84486800-84486801	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs536900661	chr12:84486838-84486839	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs185075185	chr12:84486907-84486908	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs527881544	chr12:84486912-84486913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs549451172	chr12:84486918-84486919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs188921986	chr12:84486948-84486949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs537478710	chr12:84486952-84486953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs567521439	chr12:84486954-84486955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs555762500	chr12:84486989-84486990	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs144153755	chr12:84487006-84487007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs146041655	chr12:84487007-84487008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs369886803	chr12:84487038-84487039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs553784647	chr12:84487055-84487056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ewing''s sarcoma	21437220	CNVD
Testicular germ cell tumor	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Neurodevelopmental disorder	22521361	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21949216	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Glioblastoma multiforme	21080181	CNVD
Renal cell carcinoma	19461508	CNVD
Burkitt''s lymphoma	18698080	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17899364	CNVD
Cancer	16751803	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
small cell lung cancer	20016488	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	21390271	CNVD
Cancer	20164919	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
abnormal development	18461090	CNVD
Prostate cancer	18632612	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	22032731	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Ovarian cancer	21720365	CNVD
Acute myeloid leukemia	20729466	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Renal cell carcinoma	18194544	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:84479400-84495600	Weak transcription	Fetal Heart	heart
2	chr12:84485400-84486400	Enhancers	Esophagus	oesophagus
3	chr12:84485400-84486600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:84485600-84485800	ZNF genes & repeats	Pancreas	Pancrea
5	chr12:84486200-84491000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:84491000-84491600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:84496000-84496200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
8	chr12:84496000-84498000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
9	chr12:84497600-84498400	Enhancers	Hela-S3	cervix
10	chr12:84510400-84510800	Enhancers	A549	lung
11	chr12:84510800-84511000	Active TSS	A549	lung
12	chr12:84511000-84511200	Flanking Active TSS	A549	lung
13	chr12:84511200-84511400	Active TSS	A549	lung
14	chr12:84522000-84522600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr12:84522600-84523000	Active TSS	Spleen	Spleen
16	chr12:84524400-84526000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr12:84524600-84525400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr12:84524800-84526000	Enhancers	NHDF-Ad	bronchial
19	chr12:84525000-84525400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr12:84526000-84528600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr12:84526000-84530600	Weak transcription	NHDF-Ad	bronchial
22	chr12:84528600-84529000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr12:84528800-84529000	Enhancers	NHEK	skin
24	chr12:84529000-84529800	Weak transcription	NHEK	skin
25	chr12:84529000-84530600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr12:84529400-84531000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr12:84529400-84531600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr12:84529600-84531200	Enhancers	Fetal Heart	heart
29	chr12:84529800-84531400	Enhancers	NHEK	skin
30	chr12:84530600-84531000	Enhancers	Hela-S3	cervix
31	chr12:84530600-84531200	Enhancers	NHDF-Ad	bronchial
32	chr12:84530600-84531400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr12:84530800-84531000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr12:84531000-84535000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr12:84535000-84535600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr12:84543800-84544200	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr12:84543800-84544200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr12:84543800-84544600	Enhancers	NHEK	skin
39	chr12:84549200-84549400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr12:84549400-84550400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr12:84549600-84551000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr12:84550400-84550600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr12:84551000-84552600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr12:84552600-84553400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr12:84559600-84560200	Active TSS	Placenta Amnion	Placenta Amnion
46	chr12:84559600-84560400	Enhancers	A549	lung
47	chr12:84560200-84561800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr12:84560600-84561600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr12:84566800-84567000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr12:84566800-84567000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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