Variant report

Variant	nsv1053560
Chromosome Location	chr10:24843786-24863020
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:24747755..24749783-chr10:24856732..24858753,2	K562	blood:
2	chr10:24853571..24855165-chr10:24855262..24857788,2	K562	blood:
3	chr10:24841458..24843468-chr10:24844347..24846092,2	K562	blood:
4	chr10:24844139..24847357-chr10:24848149..24851665,3	K562	blood:
5	chr10:24845474..24847177-chr10:24860463..24862561,2	MCF-7	breast:
6	chr10:24853004..24854912-chr10:24858337..24860957,2	K562	blood:
7	chr10:24845474..24847177-chr10:24860463..24862561,2	MCF-7	breast:
8	chr10:24854730..24857189-chr10:25359782..25362279,2	K562	blood:
9	chr10:24853571..24855165-chr10:24855262..24857788,2	K562	blood:
10	chr10:24844139..24847357-chr10:24848149..24851665,3	K562	blood:
11	chr10:24801844..24802435-chr10:24845845..24846651,2	MCF-7	breast:
12	chr10:23342800..23345390-chr10:24862811..24864494,2	K562	blood:
13	chr10:24807677..24808580-chr10:24846073..24846755,2	MCF-7	breast:
14	chr10:24853004..24854912-chr10:24858337..24860957,2	K562	blood:
15	chr10:24853117..24855936-chr10:24863773..24865741,2	K562	blood:
16	chr10:24859038..24860954-chr10:24862454..24864881,2	MCF-7	breast:
17	chr10:24863016..24864644-chr6:36561030..36563610,2	K562	blood:
18	chr10:24859038..24860954-chr10:24862454..24864881,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112081	chromatin interactions

Extended variants
information (count: 709 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:709 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs16924889	chr10:24843786-24843787	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs548694192	chr10:24843809-24843810	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs139707528	chr10:24843820-24843821	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs142863152	chr10:24843831-24843832	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs368457850	chr10:24843858-24843859	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs554095408	chr10:24843883-24843884	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs571112770	chr10:24843940-24843941	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs540146412	chr10:24843951-24843952	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs16924891	chr10:24843991-24843992	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs576134105	chr10:24843997-24843998	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs561420937	chr10:24844000-24844001	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs185679148	chr10:24844025-24844026	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs555405625	chr10:24844042-24844043	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs568221644	chr10:24844070-24844071	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs190348918	chr10:24844071-24844072	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs564134565	chr10:24844100-24844101	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs576192835	chr10:24844117-24844118	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs543486718	chr10:24844161-24844162	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs60086048	chr10:24844231-24844232	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs151070750	chr10:24844233-24844234	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs141002335	chr10:24844237-24844238	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs57740118	chr10:24844240-24844241	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs548310947	chr10:24844241-24844242	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs150184952	chr10:24844292-24844293	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs146790505	chr10:24844293-24844294	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs16924892	chr10:24844308-24844309	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs571097713	chr10:24844316-24844317	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs540116105	chr10:24844324-24844325	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs556930681	chr10:24844329-24844330	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs182206368	chr10:24844348-24844349	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs544036711	chr10:24844360-24844361	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs560593076	chr10:24844380-24844381	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs527911920	chr10:24844392-24844393	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs530637451	chr10:24844434-24844435	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs116500835	chr10:24844493-24844494	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs549292318	chr10:24844534-24844535	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs572064580	chr10:24844554-24844555	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs540806937	chr10:24844576-24844577	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs557524807	chr10:24844612-24844613	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs577445478	chr10:24844638-24844639	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs543301079	chr10:24844662-24844663	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs567461758	chr10:24844665-24844666	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs116955929	chr10:24844696-24844697	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs573622057	chr10:24844738-24844739	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs542160385	chr10:24844750-24844751	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs370209482	chr10:24844790-24844791	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs140693582	chr10:24844835-24844836	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs527775774	chr10:24844839-24844840	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs547623265	chr10:24844846-24844847	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs564654236	chr10:24844860-24844861	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	22522925	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Melanoma	20877625	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD

Chromatin state (count:132 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:24809200-24845400	Weak transcription	Brain Substantia Nigra	brain
2	chr10:24829000-24845000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:24835000-24845800	Weak transcription	Right Ventricle	heart
4	chr10:24835200-24845200	Weak transcription	Spleen	Spleen
5	chr10:24835200-24845600	Weak transcription	Ovary	ovary
6	chr10:24835200-24845800	Weak transcription	Lung	lung
7	chr10:24835600-24845600	Weak transcription	NH-A	brain
8	chr10:24839200-24845800	Weak transcription	Liver	Liver
9	chr10:24839400-24845800	Weak transcription	Left Ventricle	heart
10	chr10:24841200-24845600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:24841600-24845400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:24841600-24845800	Weak transcription	Pancreas	Pancrea
13	chr10:24841800-24845200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr10:24842000-24845800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr10:24842200-24844200	Enhancers	HepG2	liver
16	chr10:24842400-24844800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr10:24842400-24845600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:24842400-24845600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:24842400-24845600	Weak transcription	NHEK	skin
20	chr10:24842600-24845400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr10:24842600-24845600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:24842600-24845600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:24842600-24845600	Weak transcription	HMEC	breast
24	chr10:24843200-24846200	Enhancers	Fetal Muscle Leg	muscle
25	chr10:24843400-24843800	Weak transcription	Psoas Muscle	Psoas
26	chr10:24843600-24846600	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr10:24843800-24844400	Enhancers	Psoas Muscle	Psoas
28	chr10:24844000-24844200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:24844200-24845400	Weak transcription	HepG2	liver
30	chr10:24844200-24845600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:24844400-24845600	Weak transcription	Psoas Muscle	Psoas
32	chr10:24844800-24845200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr10:24844800-24846200	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr10:24845000-24846200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr10:24845000-24846200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr10:24845000-24846200	Enhancers	K562	blood
37	chr10:24845000-24846400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:24845200-24845800	Enhancers	Brain Cingulate Gyrus	brain
39	chr10:24845200-24846000	Enhancers	Placenta Amnion	Placenta Amnion
40	chr10:24845200-24846200	Enhancers	Spleen	Spleen
41	chr10:24845200-24846600	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr10:24845400-24845600	Enhancers	HepG2	liver
43	chr10:24845400-24846000	Enhancers	Brain Substantia Nigra	brain
44	chr10:24845400-24846200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr10:24845400-24846200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:24845400-24846200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:24845400-24846200	Enhancers	Brain Hippocampus Middle	brain
48	chr10:24845400-24846200	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr10:24845400-24846600	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr10:24845600-24845800	Bivalent Enhancer	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links