Variant report

Variant	nsv1053772
Chromosome Location	chr13:38065117-38084745
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 470 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:470 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9603214	chr13:38065117-38065118	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs552718224	chr13:38065125-38065126	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs9576283	chr13:38065141-38065142	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs532020360	chr13:38065210-38065211	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs144435713	chr13:38065219-38065220	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs568770782	chr13:38065223-38065224	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs187104662	chr13:38065250-38065251	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs34751277	chr13:38065257-38065258	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs139569348	chr13:38065269-38065270	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs4492923	chr13:38065362-38065363	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs191635932	chr13:38065365-38065366	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs183553278	chr13:38065371-38065372	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs374615976	chr13:38065380-38065381	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs9566228	chr13:38065381-38065382	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs17055914	chr13:38065420-38065421	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs566814062	chr13:38065426-38065427	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs538048669	chr13:38065441-38065442	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs9646096	chr13:38065446-38065447	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	disease
19	rs555628415	chr13:38065472-38065473	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs145082550	chr13:38065473-38065474	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs540207344	chr13:38065495-38065496	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs147935736	chr13:38065517-38065518	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs114295483	chr13:38065533-38065534	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs546019221	chr13:38065546-38065547	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs141714129	chr13:38065575-38065576	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs531763341	chr13:38065645-38065646	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs548807383	chr13:38065668-38065669	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs527550490	chr13:38065740-38065741	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs528012254	chr13:38065769-38065770	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs567451239	chr13:38065782-38065783	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs112137783	chr13:38065794-38065795	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs546597245	chr13:38065825-38065826	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs371388062	chr13:38065846-38065847	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs538724669	chr13:38065887-38065888	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs531931535	chr13:38065940-38065941	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs551938440	chr13:38065958-38065959	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs568943832	chr13:38065980-38065981	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs187987319	chr13:38066037-38066038	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs547394953	chr13:38066208-38066209	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs375162946	chr13:38066214-38066215	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs200497240	chr13:38066278-38066279	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs146789629	chr13:38066279-38066280	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs386378834	chr13:38066287-38066288	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs201625777	chr13:38066289-38066290	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs33989486	chr13:38066290-38066291	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs386770061	chr13:38066291-38066292	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs200963459	chr13:38066292-38066293	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs5028160	chr13:38066293-38066294	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs34217553	chr13:38066309-38066310	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs35189417	chr13:38066310-38066311	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Cancer	20164920	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	18698080	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Squamous cell cancer	20885788	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Thyroid cancer	19087340	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17899364	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Colorectal cancer	16774939	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Trisomy	24170809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Alveolar rhabdomyosarcoma	16790082	CNVD
Breast cancer	21785460	CNVD
Prostate cancer	18632612	CNVD
Prostate cancer	21965145	CNVD
Hirschsprung''s Disease	21712996	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Monoclonal gammopathy of undetermined significance	19135901	CNVD
Prostate cancer	19242612	CNVD
Prostate cancer	17245344	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Retinoblastoma	19183342	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Developmental delay	21147756	CNVD
Colorectal cancer	21645411	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Melanoma	18172304	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Urothelial carcinoma	21177765	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38055800-38065200	Weak transcription	HSMMtube	muscle
2	chr13:38056200-38065600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr13:38058600-38065600	Weak transcription	Fetal Stomach	stomach
4	chr13:38059400-38066000	Weak transcription	Colon Smooth Muscle	Colon
5	chr13:38060200-38065600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr13:38061400-38070000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr13:38061800-38066800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr13:38062200-38067800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr13:38062800-38067600	Enhancers	NHDF-Ad	bronchial
10	chr13:38063600-38066200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr13:38064000-38065600	Weak transcription	NH-A	brain
12	chr13:38064600-38065200	Weak transcription	Fetal Lung	lung
13	chr13:38064600-38065800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr13:38064600-38065800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr13:38064600-38065800	Weak transcription	HSMM	muscle
16	chr13:38064600-38065800	Weak transcription	NHLF	lung
17	chr13:38064800-38065800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr13:38064800-38065800	Weak transcription	Osteobl	bone
19	chr13:38064800-38066600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr13:38065000-38066200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr13:38065200-38066000	Enhancers	Fetal Lung	lung
22	chr13:38065200-38068400	Enhancers	HSMMtube	muscle
23	chr13:38065600-38066000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr13:38065600-38066000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr13:38065600-38066000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr13:38065600-38066000	Enhancers	Fetal Muscle Leg	muscle
27	chr13:38065600-38067600	Enhancers	HMEC	breast
28	chr13:38065600-38067600	Enhancers	NH-A	brain
29	chr13:38065600-38067800	Enhancers	Rectal Smooth Muscle	rectum
30	chr13:38065600-38068400	Enhancers	Fetal Stomach	stomach
31	chr13:38065800-38066200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr13:38065800-38067600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr13:38065800-38067600	Enhancers	NHLF	lung
34	chr13:38065800-38068000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr13:38065800-38068200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr13:38065800-38068200	Enhancers	HSMM	muscle
37	chr13:38065800-38069800	Enhancers	Osteobl	bone
38	chr13:38066000-38067000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr13:38066000-38067000	Weak transcription	Fetal Muscle Leg	muscle
40	chr13:38066000-38069200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr13:38066000-38069200	Enhancers	Colon Smooth Muscle	Colon
42	chr13:38066200-38067200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr13:38066200-38069200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr13:38066200-38070000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr13:38066400-38067600	Enhancers	NHEK	skin
46	chr13:38066600-38067600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr13:38066800-38067200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr13:38067000-38067200	Enhancers	Left Ventricle	heart
49	chr13:38067000-38067600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr13:38067000-38067600	Enhancers	Fetal Muscle Leg	muscle

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