Variant report

Variant	nsv1054102
Chromosome Location	chr15:42493052-42528765
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:524)
CpG islands
(count:795)
Chromatin interactive
region (count:37)
LncRNA
region (count:11)
Mature miRNA
region (count: 0)
miRNA target
sites (count:5)

(count:524 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:42518875-42519222	HepG2	liver:	n/a	n/a
2	ATF1	chr15:42507234-42507316	K562	blood:	n/a	n/a
3	BATF	chr15:42499865-42500165	GM12878	blood:	n/a	chr15:42500063-42500072
4	BCL3	chr15:42500230-42500800	A549	lung:	n/a	n/a
5	BCL3	chr15:42500237-42500766	A549	lung:	n/a	n/a
6	BHLHE40	chr15:42511208-42511677	GM12878	blood:	n/a	n/a
7	BHLHE40	chr15:42500326-42500626	K562	blood:	n/a	n/a
8	BHLHE40	chr15:42500455-42500848	GM12878	blood:	n/a	n/a
9	BRCA1	chr15:42500240-42500923	Hela-S3	cervix:	n/a	n/a
10	CBX3	chr15:42500340-42500851	K562	blood:	n/a	n/a
11	CCNT2	chr15:42500234-42500565	K562	blood:	n/a	n/a
12	CEBPB	chr15:42498708-42499052	A549	lung:	n/a	chr15:42498862-42498873
13	CEBPB	chr15:42498726-42499021	HepG2	liver:	n/a	chr15:42498862-42498873
14	CEBPB	chr15:42498756-42499006	IMR90	lung:	n/a	chr15:42498862-42498873
15	CEBPB	chr15:42503012-42503027	A549	lung:	n/a	n/a
16	CEBPB	chr15:42493574-42493594	HepG2	liver:	n/a	chr15:42493576-42493587
17	CEBPZ	chr15:42511849-42511962	HepG2	liver:	n/a	n/a
18	CHD1	chr15:42499879-42500850	GM12878	blood:	n/a	n/a
19	CHD1	chr15:42500661-42500910	H1-hESC	embryonic stem cell:	n/a	n/a
20	CHD2	chr15:42500349-42500725	Hela-S3	cervix:	n/a	n/a
21	CHD2	chr15:42500234-42500802	GM12878	blood:	n/a	n/a
22	CHD2	chr15:42500293-42500302	K562	blood:	n/a	n/a
23	CHD2	chr15:42500306-42500578	H1-hESC	embryonic stem cell:	n/a	n/a
24	CREB1	chr15:42500203-42500617	A549	lung:	n/a	n/a
25	CTCF	chr15:42508700-42508850	AG04450	lung:	n/a	chr15:42508811-42508832
26	CTCF	chr15:42508780-42508930	NB4	blood:	n/a	chr15:42508811-42508832
27	CTCF	chr15:42508740-42508890	HPF	lung:	n/a	chr15:42508811-42508832
28	CTCF	chr15:42508700-42508850	HCM	heart:	n/a	chr15:42508811-42508832
29	CTCF	chr15:42508640-42508790	HAc	cerebellar:	n/a	n/a
30	CTCF	chr15:42508800-42508950	K562	blood:	n/a	chr15:42508811-42508832
31	CTCF	chr15:42508800-42508950	HPAF	blood vessel:	n/a	chr15:42508811-42508832
32	CTCF	chr15:42508740-42508890	HCPEpiC	choroid plexus:	n/a	chr15:42508811-42508832
33	CTCF	chr15:42518980-42519130	WERI-Rb-1	eye:	n/a	n/a
34	CTCF	chr15:42508789-42508865	GM13976	blood:	n/a	chr15:42508811-42508832
35	CTCF	chr15:42508774-42508873	HepG2	liver:	n/a	chr15:42508811-42508832
36	CTCF	chr15:42508640-42508790	MCF-7	breast:	n/a	n/a
37	CTCF	chr15:42519031-42519101	HepG2	liver:	n/a	n/a
38	CTCF	chr15:42508800-42508950	GM12873	blood:	n/a	chr15:42508811-42508832
39	CTCF	chr15:42508874-42508875	HepG2	liver:	n/a	n/a
40	CTCF	chr15:42508720-42508870	BE2_C	brain:	n/a	chr15:42508811-42508832
41	CTCF	chr15:42508720-42508870	AG09319	gingival:	n/a	chr15:42508811-42508832
42	CTCF	chr15:42508747-42508867	LNCaP	prostate:	n/a	chr15:42508811-42508832
43	CTCF	chr15:42508720-42508870	HMEC	breast:	n/a	chr15:42508811-42508832
44	CTCF	chr15:42508716-42508900	MCF-7	breast:	n/a	chr15:42508811-42508832
45	CTCF	chr15:42508742-42508918	HUVEC	blood vessel:	n/a	chr15:42508811-42508832
46	CTCF	chr15:42508680-42508830	HVMF	connective:	n/a	n/a
47	CTCF	chr15:42508740-42508890	NHDF-neo	bronchial:	n/a	chr15:42508811-42508832
48	CTCF	chr15:42508695-42508859	HepG2	liver:	n/a	chr15:42508811-42508832
49	CTCF	chr15:42508700-42508850	A549	lung:	n/a	chr15:42508811-42508832
50	CTCF	chr15:42508717-42508925	Hela-S3	cervix:	n/a	chr15:42508811-42508832

(count:795 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:42500502-42500552	HAEpiC	amniotic membrane:	n/a
2	chr15:42500342-42500392	HRCEpiC	kidney:	n/a
3	chr15:42500502-42500552	HAEpiC	amniotic membrane:	n/a
4	chr15:42500342-42500392	HRCEpiC	kidney:	n/a
5	chr15:42500737-42500787	HCT-116	colon:	n/a
6	chr15:42500843-42500893	NHBE	bronchial:	n/a
7	chr15:42500843-42500893	HCT-116	colon:	n/a
8	chr15:42500601-42500651	HepG2	liver:	n/a
9	chr15:42500107-42500157	GM19239	blood:	n/a
10	chr15:42500161-42500211	NHDF-neo	bronchial:	n/a
11	chr15:42500107-42500157	SK-N-SH	brain:	n/a
12	chr15:42500463-42500513	Hepatocyte	liver:	n/a
13	chr15:42500737-42500787	PrEC	prostate:	n/a
14	chr15:42500502-42500552	HCT-116	colon:	n/a
15	chr15:42500601-42500651	SK-N-MC	brain:	n/a
16	chr15:42500120-42500170	HCT-116	colon:	n/a
17	chr15:42500463-42500513	NHBE	bronchial:	n/a
18	chr15:42496585-42496635	HRE	kidney:	n/a
19	chr15:42500697-42500747	PrEC	prostate:	n/a
20	chr15:42500737-42500787	PANC-1	pancreas:	n/a
21	chr15:42500697-42500747	MCF-7	breast:	n/a
22	chr15:42500120-42500170	Caco-2	colon:	n/a
23	chr15:42500714-42500764	HL-60	blood:	n/a
24	chr15:42500697-42500747	PANC-1	pancreas:	n/a
25	chr15:42496585-42496635	NB4	blood:	n/a
26	chr15:42500737-42500787	PFSK-1	brain:	n/a
27	chr15:42496585-42496635	RPTEC	kidney:	n/a
28	chr15:42500697-42500747	Hepatocyte	liver:	n/a
29	chr15:42500463-42500513	AG09319	gingival:	n/a
30	chr15:42500342-42500392	SKMC	muscle:	n/a
31	chr15:42500463-42500513	HCPEpiC	choroid plexus:	n/a
32	chr15:42500342-42500392	U87	brain:	n/a
33	chr15:42500463-42500513	RPTEC	kidney:	n/a
34	chr15:42500107-42500157	AG09319	gingival:	n/a
35	chr15:42503039-42503089	NHBE	bronchial:	n/a
36	chr15:42500502-42500552	NB4	blood:	n/a
37	chr15:42500463-42500513	NT2-D1	testis:	n/a
38	chr15:42500601-42500651	HUVEC	blood vessel:	n/a
39	chr15:42500714-42500764	PFSK-1	brain:	n/a
40	chr15:42500161-42500211	AoSMC	blood vessel:	n/a
41	chr15:42500697-42500747	A549	lung:	n/a
42	chr15:42503039-42503089	LNCaP	prostate:	n/a
43	chr15:42500120-42500170	T-47D	breast:	n/a
44	chr15:42500737-42500787	AG09309	skin:	n/a
45	chr15:42496585-42496635	NHDF-neo	bronchial:	n/a
46	chr15:42500120-42500170	GM12892	blood:	n/a
47	chr15:42500161-42500211	A549	lung:	n/a
48	chr15:42496585-42496635	HEK293	kidney:	embryo
49	chr15:42500697-42500747	Caco-2	colon:	n/a
50	chr15:42496585-42496635	LNCaP	prostate:	n/a

(count:37 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:42500219..42503747-chr15:42507831..42510489,3	MCF-7	breast:
2	chr15:42500866..42502665-chr15:42505005..42506653,2	K562	blood:
3	chr15:42490478..42492456-chr15:42492848..42495369,2	K562	blood:
4	chr15:42501165..42502669-chr15:42567610..42570381,2	K562	blood:
5	chr15:42492459..42494336-chr15:42498829..42500947,2	MCF-7	breast:
6	chr15:42507223..42510058-chr15:42518186..42521872,4	K562	blood:
7	chr15:42500288..42501975-chr15:42502020..42503939,3	MCF-7	breast:
8	chr15:42503775..42505358-chr15:42508277..42510017,2	K562	blood:
9	chr15:42446822..42448866-chr15:42493306..42496254,2	MCF-7	breast:
10	chr15:42515383..42517801-chr15:42527177..42529552,2	K562	blood:
11	chr15:42490871..42492782-chr15:42500506..42502580,2	K562	blood:
12	chr15:42500219..42503747-chr15:42507831..42510489,3	MCF-7	breast:
13	chr15:42513814..42516638-chr15:42517068..42519748,2	K562	blood:
14	chr15:42499311..42503091-chr15:42504609..42507000,4	MCF-7	breast:
15	chr15:42517623..42519881-chr15:42564491..42566619,2	K562	blood:
16	chr15:42503423..42505275-chr15:42506860..42509777,2	K562	blood:
17	chr15:42471137..42473519-chr15:42498566..42500959,2	MCF-7	breast:
18	chr15:42495982..42497987-chr15:42498857..42500892,2	MCF-7	breast:
19	chr15:42498973..42502345-chr15:42523295..42525097,3	K562	blood:
20	chr15:42498938..42502268-chr15:42564432..42567193,3	MCF-7	breast:
21	chr15:42518203..42520282-chr15:42521732..42524296,3	MCF-7	breast:
22	chr15:42498997..42501611-chr15:42508533..42512053,3	K562	blood:
23	chr15:42519855..42522607-chr15:42524004..42525780,2	K562	blood:
24	chr15:42498434..42500686-chr15:42500837..42503137,2	K562	blood:
25	chr15:42503423..42505275-chr15:42506860..42509777,2	K562	blood:
26	chr15:42518203..42520282-chr15:42521732..42524296,3	MCF-7	breast:
27	chr15:42493109..42497444-chr15:42498289..42501536,5	K562	blood:
28	chr15:42513814..42516638-chr15:42517068..42519748,2	K562	blood:
29	chr15:42500036..42501748-chr15:42507058..42510033,2	K562	blood:
30	chr15:42523615..42525388-chr15:42565299..42567671,2	K562	blood:
31	chr15:42507108..42510058-chr15:42520076..42521872,3	K562	blood:
32	chr15:42499099..42501734-chr15:42564008..42565710,2	K562	blood:
33	chr15:42503775..42505358-chr15:42508277..42510017,2	K562	blood:
34	chr15:42498784..42500561-chr15:42840086..42841928,2	K562	blood:
35	chr15:42500866..42502665-chr15:42505005..42506653,2	K562	blood:
36	chr15:42498997..42501611-chr15:42508533..42512053,3	K562	blood:
37	chr15:42515383..42517801-chr15:42527177..42529552,2	K562	blood:

(count:11 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GANC-1	chr15:42500817-42500882	ENSG00000261002.1
2	lnc-GANC-1	chr15:42503367-42503531	ENSG00000261002.1
3	lnc-GANC-1	chr15:42500962-42501115	ENSG00000261002.1
4	lnc-GANC-1	chr15:42500611-42500882	ENSG00000261002.1
5	lnc-GANC-1	chr15:42511117-42511151	ENSG00000261002.1
6	lnc-GANC-1	chr15:42516606-42516756	ENSG00000261002.1
7	lnc-VPS39-1	chr15:42510001-42510204	NONHSAT042003
8	lnc-GANC-1	chr15:42500962-42501115	ENSG00000261002.1
9	lnc-GANC-1	chr15:42518978-42519188	ENSG00000261002.1
10	lnc-TMEM87A-1	chr15:42500279-42500505	NONHSAT041998
11	lnc-VPS39-1	chr15:42503337-42503947	NONHSAT042003

No data

(count:5 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	TMEM87A	hsa-miR-16-5p	chr15:42502929-42502923
2	TMEM87A	hsa-miR-16-5p	chr15:42502923-42502943
3	TMEM87A	hsa-miR-30a-5p	chr15:42525358-42525378
4	TMEM87A	hsa-miR-30a-5p	chr15:42503278-42503271
5	TMEM87A	hsa-miR-30a-5p	chr15:42503272-42503294

Variant related genes	Relation type
VPS39	TF binding region
MIR627	TF binding region
TMEM87A	TF binding region
ENSG00000261002	TF binding region
VPS39	CpG island
MIR627	CpG island
TMEM87A	CpG island
ENSG00000261002	CpG island
ENSG00000168907	chromatin interactions
ENSG00000261002	chromatin interactions
ENSG00000214013	chromatin interactions
ENSG00000137814	chromatin interactions
ENSG00000207712	chromatin interactions
ENSG00000103978	chromatin interactions
ENSG00000180979	chromatin interactions
ENSG00000166887	chromatin interactions

Extended variants
information (count: 1258 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:1258 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2138831	chr15:42493052-42493053	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs143263042	chr15:42493156-42493157	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs77912017	chr15:42493178-42493179	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs373607571	chr15:42493186-42493187	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs139011851	chr15:42493217-42493218	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs371610802	chr15:42493229-42493230	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs185262000	chr15:42493255-42493256	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs531596393	chr15:42493290-42493291	Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs189793255	chr15:42493310-42493311	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
10	rs616071	chr15:42493318-42493319	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs552553925	chr15:42493368-42493369	Weak transcription Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
12	rs34867021	chr15:42493369-42493370	Weak transcription Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
13	rs398118794	chr15:42493376-42493377	Weak transcription Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
14	rs536052936	chr15:42493384-42493385	Weak transcription Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
15	rs142206823	chr15:42493427-42493428	Weak transcription Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
16	rs114386990	chr15:42493436-42493437	Weak transcription Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
17	rs538373970	chr15:42493480-42493481	Weak transcription Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
18	rs116541575	chr15:42493530-42493531	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
19	rs575236772	chr15:42493531-42493532	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
20	rs537440820	chr15:42493552-42493553	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
21	rs555252372	chr15:42493607-42493608	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
22	rs571127206	chr15:42493655-42493656	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
23	rs193260968	chr15:42493672-42493673	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
24	rs146394956	chr15:42493727-42493728	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
25	rs184766515	chr15:42493764-42493765	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
26	rs629255	chr15:42493777-42493778	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs546357971	chr15:42493780-42493781	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
28	rs536507432	chr15:42493794-42493795	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
29	rs188378711	chr15:42493831-42493832	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
30	rs531733142	chr15:42493842-42493843	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
31	rs548250278	chr15:42493859-42493860	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
32	rs561253849	chr15:42493885-42493886	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
33	rs180789920	chr15:42493914-42493915	Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
34	rs546467952	chr15:42494005-42494006	Weak transcription Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
35	rs546230854	chr15:42494027-42494028	Weak transcription Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
36	rs138393618	chr15:42494059-42494060	Weak transcription Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
37	rs538439257	chr15:42494060-42494061	Weak transcription Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs552297660	chr15:42494125-42494126	Weak transcription Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
39	rs602270	chr15:42494131-42494132	Weak transcription Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs537861991	chr15:42494162-42494163	Weak transcription Strong transcription Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs554236833	chr15:42494282-42494283	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs577357776	chr15:42494291-42494292	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs574461069	chr15:42494295-42494296	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs534532281	chr15:42494309-42494310	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
45	rs34248733	chr15:42494335-42494336	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
46	rs554495800	chr15:42494353-42494354	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
47	rs75341035	chr15:42494376-42494377	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
48	rs546033451	chr15:42494400-42494401	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
49	rs78400843	chr15:42494480-42494481	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
50	rs576425534	chr15:42494525-42494526	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Angelman syndrome	16183798	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	20164920	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Cancer	21129771	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21045282	CNVD
Breast cancer	22032731	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Multiple myeloma	16616336	CNVD
Renal cell carcinoma	18765545	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Myelofibrosis	22110671	CNVD
Maculopathy	20981449	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pancreatic cancer	17952125	CNVD
Intracranial arachnoid cysts	20187927	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:1627 , 50 per page) page: 1 2 3 4 5 6 7 ... 33

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42460000-42499200	Weak transcription	A549	lung
2	chr15:42460000-42499800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:42466000-42498800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:42475000-42499200	Weak transcription	Stomach Mucosa	stomach
5	chr15:42476800-42499600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:42477200-42497800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:42478400-42498600	Weak transcription	Gastric	stomach
8	chr15:42480200-42496000	Weak transcription	Esophagus	oesophagus
9	chr15:42480400-42498600	Weak transcription	Small Intestine	intestine
10	chr15:42480400-42498800	Weak transcription	Right Ventricle	heart
11	chr15:42480600-42496000	Weak transcription	Spleen	Spleen
12	chr15:42481200-42499800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:42481600-42497600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:42481600-42497600	Weak transcription	HUVEC	blood vessel
15	chr15:42481600-42498600	Weak transcription	Fetal Brain Male	brain
16	chr15:42482800-42499400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:42483200-42499400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:42483400-42498600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr15:42483400-42498600	Weak transcription	Fetal Kidney	kidney
20	chr15:42483600-42497600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr15:42483600-42498600	Weak transcription	Brain Substantia Nigra	brain
22	chr15:42483600-42498600	Weak transcription	K562	blood
23	chr15:42483600-42499200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr15:42483800-42499400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:42484000-42499200	Weak transcription	HMEC	breast
26	chr15:42484200-42493400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr15:42484400-42495800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr15:42484400-42499400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr15:42484800-42498600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr15:42484800-42498800	Weak transcription	NHEK	skin
31	chr15:42484800-42499400	Weak transcription	Left Ventricle	heart
32	chr15:42485000-42493400	Weak transcription	Lung	lung
33	chr15:42487000-42496000	Weak transcription	Pancreas	Pancrea
34	chr15:42487400-42498400	Weak transcription	HepG2	liver
35	chr15:42488800-42493400	Strong transcription	Primary T cells from cord blood	blood
36	chr15:42489000-42494200	Strong transcription	Fetal Lung	lung
37	chr15:42489000-42494400	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr15:42489400-42494400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr15:42489600-42494400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr15:42489600-42494400	Strong transcription	Fetal Intestine Large	intestine
41	chr15:42489600-42494600	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr15:42489600-42495200	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr15:42489600-42496400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr15:42489600-42496600	Strong transcription	Primary B cells from cord blood	blood
45	chr15:42489800-42494200	Strong transcription	Adipose Nuclei	Adipose
46	chr15:42490000-42499400	Weak transcription	Aorta	Aorta
47	chr15:42490000-42499400	Weak transcription	Colonic Mucosa	Colon
48	chr15:42490400-42494200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr15:42490400-42495800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr15:42490400-42498600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links