Variant report

Variant	nsv1054645
Chromosome Location	chr9:115777096-115802614
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr9:115791194-115791446	A549	lung:	n/a	chr9:115791286-115791297 chr9:115791410-115791423
2	CEBPB	chr9:115802387-115802637	HepG2	liver:	n/a	n/a
3	CEBPB	chr9:115788566-115788732	HepG2	liver:	n/a	n/a
4	CEBPB	chr9:115787676-115787860	IMR90	lung:	n/a	n/a
5	CEBPB	chr9:115788468-115788841	IMR90	lung:	n/a	n/a
6	CEBPB	chr9:115791138-115791440	HepG2	liver:	n/a	chr9:115791286-115791297 chr9:115791410-115791423
7	CTCF	chr9:115796680-115796830	GM12867	blood:	n/a	n/a
8	CTCF	chr9:115781394-115781467	Kidney_OC	kidney:	n/a	n/a
9	CTCF	chr9:115786280-115786430	GM12875	blood:	n/a	n/a
10	FOS	chr9:115788498-115788850	MCF10A-Er-Src	breast:	n/a	chr9:115788716-115788726 chr9:115788672-115788684 chr9:115788716-115788726 chr9:115788718-115788729 chr9:115788716-115788726 chr9:115788679-115788687
11	FOS	chr9:115788509-115788835	MCF10A-Er-Src	breast:	n/a	chr9:115788716-115788726 chr9:115788672-115788684 chr9:115788716-115788726 chr9:115788718-115788729 chr9:115788716-115788726 chr9:115788679-115788687
12	FOS	chr9:115802494-115802682	MCF10A-Er-Src	breast:	n/a	n/a
13	FOS	chr9:115788533-115788829	MCF10A-Er-Src	breast:	n/a	chr9:115788716-115788726 chr9:115788672-115788684 chr9:115788716-115788726 chr9:115788718-115788729 chr9:115788716-115788726 chr9:115788679-115788687
14	FOS	chr9:115788539-115788834	MCF10A-Er-Src	breast:	n/a	chr9:115788716-115788726 chr9:115788672-115788684 chr9:115788716-115788726 chr9:115788718-115788729 chr9:115788716-115788726 chr9:115788679-115788687
15	JUN	chr9:115802527-115802710	HepG2	liver:	n/a	n/a
16	JUND	chr9:115802440-115802788	HepG2	liver:	n/a	chr9:115802626-115802637
17	MAFK	chr9:115795418-115795517	Hela-S3	cervix:	n/a	n/a
18	POLR2A	chr9:115791231-115791232	MCF-7	breast:	n/a	n/a
19	POLR2A	chr9:115789317-115789517	MCF10A-Er-Src	breast:	n/a	n/a
20	POLR2A	chr9:115799000-115799045	A549	lung:	n/a	n/a
21	POLR2A	chr9:115788798-115788891	MCF10A-Er-Src	breast:	n/a	n/a
22	POLR2A	chr9:115799799-115799939	ProgFib	skin:	n/a	n/a
23	POLR2A	chr9:115799005-115799041	MCF-7	breast:	n/a	n/a
24	POLR2A	chr9:115791243-115791343	MCF-7	breast:	n/a	n/a
25	POLR2A	chr9:115779802-115779997	MCF10A-Er-Src	breast:	n/a	n/a
26	POLR2A	chr9:115801871-115802071	MCF10A-Er-Src	breast:	n/a	n/a
27	REST	chr9:115792183-115792321	H1-hESC	embryonic stem cell:	n/a	n/a
28	SETDB1	chr9:115783662-115784173	U2OS	brain:	n/a	n/a
29	SPI1	chr9:115799982-115800274	HL-60	blood:	n/a	n/a
30	STAT3	chr9:115788608-115788807	MCF10A-Er-Src	breast:	n/a	n/a
31	STAT3	chr9:115788577-115788765	MCF10A-Er-Src	breast:	n/a	n/a
32	ZNF274	chr9:115802465-115808194	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:115785171..115787186-chr9:115793966..115796289,2	K562	blood:
2	chr9:115785171..115787186-chr9:115793966..115796289,2	K562	blood:

Variant related genes	Relation type
ZNF883	TF binding region

Extended variants
information (count: 469 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:469 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs185981838	chr9:115780201-115780202	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs528131382	chr9:115780224-115780225	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs7021392	chr9:115780225-115780226	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs117646410	chr9:115780240-115780241	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs144309760	chr9:115780259-115780260	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs372334978	chr9:115780309-115780310	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs191122828	chr9:115780321-115780322	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs74307755	chr9:115780329-115780330	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs147787419	chr9:115780341-115780342	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs183431836	chr9:115780394-115780395	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs542090750	chr9:115780416-115780417	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs139551025	chr9:115780450-115780451	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs527273920	chr9:115780481-115780482	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs113982818	chr9:115780503-115780504	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs149832244	chr9:115780506-115780507	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs139464121	chr9:115780558-115780559	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs374152711	chr9:115780559-115780560	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs145804830	chr9:115780566-115780567	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs532826364	chr9:115780578-115780579	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs369745855	chr9:115780581-115780582	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs549489528	chr9:115780589-115780590	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs370189666	chr9:115787601-115787602	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs571702311	chr9:115787621-115787622	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs540575220	chr9:115787632-115787633	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs80307123	chr9:115787648-115787649	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs532856195	chr9:115787666-115787667	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs549873159	chr9:115787685-115787686	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs563710861	chr9:115787699-115787700	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs115817414	chr9:115787726-115787727	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs549688913	chr9:115787805-115787806	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs559251349	chr9:115787808-115787809	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs181380256	chr9:115787818-115787819	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs10117845	chr9:115787828-115787829	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs551765320	chr9:115787833-115787834	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs571636129	chr9:115787838-115787839	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs537127421	chr9:115787864-115787865	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs369055848	chr9:115787876-115787877	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs372050672	chr9:115787906-115787907	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs16917694	chr9:115787955-115787956	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs185267807	chr9:115787971-115787972	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs148634881	chr9:115787992-115787993	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs190023131	chr9:115788001-115788002	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs540944727	chr9:115788016-115788017	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs183207845	chr9:115788025-115788026	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs577598450	chr9:115788136-115788137	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs187499764	chr9:115788151-115788152	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs144448551	chr9:115788188-115788189	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs373714782	chr9:115788220-115788221	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs58141788	chr9:115788233-115788234	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs191479000	chr9:115788265-115788266	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Testicular germ cell tumor	18059402	CNVD
Breast cancer	21364760	CNVD
Developmental delay	21147756	CNVD
Lung cancer	19147751	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	22522925	CNVD
Melanoma	20877625	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115780200-115780600	ZNF genes & repeats	Liver	Liver
2	chr9:115787600-115788400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr9:115788400-115788600	Enhancers	Osteobl	bone
4	chr9:115789200-115789400	Enhancers	Osteobl	bone
5	chr9:115790800-115791600	ZNF genes & repeats	Liver	Liver
6	chr9:115790800-115791800	ZNF genes & repeats	Adipose Nuclei	Adipose
7	chr9:115790800-115791800	ZNF genes & repeats	Brain Hippocampus Middle	brain
8	chr9:115791600-115793000	Weak transcription	Liver	Liver
9	chr9:115791800-115793000	Weak transcription	Adipose Nuclei	Adipose
10	chr9:115791800-115793200	Weak transcription	Brain Hippocampus Middle	brain
11	chr9:115793000-115799200	ZNF genes & repeats	Adipose Nuclei	Adipose
12	chr9:115793000-115822200	ZNF genes & repeats	Liver	Liver
13	chr9:115793200-115793800	ZNF genes & repeats	Brain Hippocampus Middle	brain
14	chr9:115793200-115795000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
15	chr9:115795800-115817800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:115798800-115818200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
17	chr9:115799600-115820400	ZNF genes & repeats	Adipose Nuclei	Adipose
18	chr9:115799800-115817600	ZNF genes & repeats	Brain Hippocampus Middle	brain
19	chr9:115799800-115818200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:115800600-115812400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:115801000-115801200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
22	chr9:115801600-115808200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
23	chr9:115801800-115817400	ZNF genes & repeats	Brain Germinal Matrix	brain
24	chr9:115802000-115818000	ZNF genes & repeats	Brain Anterior Caudate	brain
25	chr9:115802200-115803800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr9:115802200-115812400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
27	chr9:115802200-115813400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:115802200-115815400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
29	chr9:115802400-115814800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
30	chr9:115802400-115815600	ZNF genes & repeats	Brain Substantia Nigra	brain
31	chr9:115802600-115812200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links