Variant report

Variant	nsv1055173
Chromosome Location	chr17:15875935-16097241
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2969)
CpG islands
(count:1590)
Chromatin interactive
region (count:159)
LncRNA
region (count:16)
Mature miRNA
region (count: 0)
miRNA target
sites (count:4)

(count:2969 , 50 per page) page: 1 2 3 4 5 6 7 ... 60

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr17:16009878-16010075	K562	blood:	n/a	n/a
2	ARID3A	chr17:16074975-16075244	HepG2	liver:	n/a	n/a
3	ARID3A	chr17:15943987-15944643	HepG2	liver:	n/a	n/a
4	ARID3A	chr17:15931068-15932170	K562	blood:	n/a	n/a
5	ARID3A	chr17:15902968-15903142	K562	blood:	n/a	n/a
6	ARID3A	chr17:15901668-15902127	K562	blood:	n/a	n/a
7	ARID3A	chr17:15914877-15915353	HepG2	liver:	n/a	n/a
8	ARID3A	chr17:15901834-15902081	HepG2	liver:	n/a	n/a
9	ARID3A	chr17:15917080-15917553	HepG2	liver:	n/a	n/a
10	ARID3A	chr17:15946193-15946249	HepG2	liver:	n/a	n/a
11	ARID3A	chr17:15902481-15903240	HepG2	liver:	n/a	n/a
12	ARID3A	chr17:15885154-15885723	K562	blood:	n/a	n/a
13	ARID3A	chr17:15942859-15943125	HepG2	liver:	n/a	n/a
14	ARID3A	chr17:15929429-15929620	K562	blood:	n/a	n/a
15	ATF1	chr17:15885244-15885573	K562	blood:	n/a	n/a
16	ATF1	chr17:15902769-15903231	K562	blood:	n/a	n/a
17	ATF1	chr17:15875851-15876087	K562	blood:	n/a	n/a
18	ATF1	chr17:15930958-15931807	K562	blood:	n/a	n/a
19	ATF1	chr17:16009815-16010155	K562	blood:	n/a	n/a
20	ATF2	chr17:15931264-15931818	GM12878	blood:	n/a	n/a
21	ATF2	chr17:15902507-15903189	H1-hESC	embryonic stem cell:	n/a	n/a
22	ATF2	chr17:15902636-15903255	H1-hESC	embryonic stem cell:	n/a	n/a
23	ATF2	chr17:15884411-15884928	GM12878	blood:	n/a	n/a
24	ATF2	chr17:15884539-15884890	GM12878	blood:	n/a	n/a
25	ATF2	chr17:15930985-15931892	GM12878	blood:	n/a	n/a
26	ATF2	chr17:15902715-15903257	GM12878	blood:	n/a	n/a
27	ATF3	chr17:15931346-15931800	K562	blood:	n/a	n/a
28	ATF3	chr17:15902819-15903127	K562	blood:	n/a	n/a
29	ATF3	chr17:15902730-15903281	A549	lung:	n/a	chr17:15902790-15902799
30	ATF3	chr17:15902763-15903342	A549	lung:	n/a	chr17:15902790-15902799
31	BACH1	chr17:15973666-15973854	H1-hESC	embryonic stem cell:	n/a	n/a
32	BACH1	chr17:15902645-15903078	H1-hESC	embryonic stem cell:	n/a	n/a
33	BACH1	chr17:15885110-15885621	H1-hESC	embryonic stem cell:	n/a	chr17:15885331-15885345
34	BACH1	chr17:15885175-15885548	K562	blood:	n/a	chr17:15885331-15885345
35	BACH1	chr17:15995090-15995456	K562	blood:	n/a	n/a
36	BACH1	chr17:15995089-15995466	H1-hESC	embryonic stem cell:	n/a	n/a
37	BACH1	chr17:15924260-15924267	K562	blood:	n/a	n/a
38	BATF	chr17:15990257-15990528	GM12878	blood:	n/a	n/a
39	BATF	chr17:15884479-15884852	GM12878	blood:	n/a	n/a
40	BATF	chr17:15931441-15931778	GM12878	blood:	n/a	chr17:15931582-15931593 chr17:15931624-15931635
41	BATF	chr17:15931410-15931855	GM12878	blood:	n/a	chr17:15931582-15931593 chr17:15931624-15931635
42	BATF	chr17:15904612-15904828	GM12878	blood:	n/a	chr17:15904756-15904767 chr17:15904700-15904711 chr17:15904723-15904734
43	BATF	chr17:16070087-16070463	GM12878	blood:	n/a	n/a
44	BATF	chr17:16070087-16070406	GM12878	blood:	n/a	n/a
45	BCL11A	chr17:15884558-15884812	GM12878	blood:	n/a	n/a
46	BCL11A	chr17:15884533-15884893	GM12878	blood:	n/a	n/a
47	BCL3	chr17:15903451-15904309	A549	lung:	n/a	n/a
48	BCL3	chr17:15930138-15932080	A549	lung:	n/a	n/a
49	BCL3	chr17:15902497-15903276	A549	lung:	n/a	n/a
50	BCL3	chr17:15902474-15903301	A549	lung:	n/a	n/a

(count:1590 , 50 per page) page: 1 2 3 4 5 6 7 ... 32

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:15903290-15903340	HCF	heart:	n/a
2	chr17:15902694-15902744	HIPEpiC	eye:	n/a
3	chr17:16049075-16049125	HAEpiC	amniotic membrane:	n/a
4	chr17:15903739-15903789	HCF	heart:	n/a
5	chr17:15903290-15903340	HCF	heart:	n/a
6	chr17:15902694-15902744	HIPEpiC	eye:	n/a
7	chr17:16049075-16049125	HAEpiC	amniotic membrane:	n/a
8	chr17:15903739-15903789	HCF	heart:	n/a
9	chr17:15931082-15931132	MCF-7	breast:	n/a
10	chr17:15902952-15903002	AG04450	lung:	fetal
11	chr17:15901788-15901838	Jurkat	blood:	n/a
12	chr17:15902541-15902591	AoSMC	blood vessel:	n/a
13	chr17:15885326-15885376	AG09319	gingival:	n/a
14	chr17:15931082-15931132	Jurkat	blood:	n/a
15	chr17:16048731-16048781	K562	blood:	n/a
16	chr17:16049075-16049125	HPAEpiC	pulmonary alveolar:	n/a
17	chr17:15902837-15902887	HIPEpiC	eye:	n/a
18	chr17:15903096-15903146	AG04450	lung:	fetal
19	chr17:16048731-16048781	HRE	kidney:	n/a
20	chr17:15906619-15906669	HUVEC	blood vessel:	n/a
21	chr17:15902795-15902845	Hepatocyte	liver:	n/a
22	chr17:16048275-16048325	K562	blood:	n/a
23	chr17:15902837-15902887	K562	blood:	n/a
24	chr17:15902694-15902744	SK-N-MC	brain:	n/a
25	chr17:15902694-15902744	SK-N-SH	brain:	n/a
26	chr17:15906619-15906669	HCM	heart:	n/a
27	chr17:15902694-15902744	AG10803	skin:	n/a
28	chr17:15902560-15902610	HNPCEpiC	eye:	n/a
29	chr17:15931082-15931132	AG09319	gingival:	n/a
30	chr17:16048731-16048781	A549	lung:	n/a
31	chr17:15931082-15931132	Hela-S3	cervix:	n/a
32	chr17:16049075-16049125	NHDF-neo	bronchial:	n/a
33	chr17:15903739-15903789	NB4	blood:	n/a
34	chr17:15901788-15901838	HMEC	breast:	n/a
35	chr17:15970327-15970377	BE2_C	brain:	n/a
36	chr17:16048275-16048325	AoSMC	blood vessel:	n/a
37	chr17:15902541-15902591	ECC-1	luminal epithelium:	n/a
38	chr17:15902795-15902845	Hela-S3	cervix:	n/a
39	chr17:15917660-15917710	GM06990	blood:	n/a
40	chr17:15906619-15906669	SAEC	small airway:	n/a
41	chr17:15902560-15902610	HCPEpiC	choroid plexus:	n/a
42	chr17:15902660-15902710	NT2-D1	testis:	n/a
43	chr17:15917660-15917710	ProgFib	skin:	n/a
44	chr17:15906619-15906669	NHDF-neo	bronchial:	n/a
45	chr17:15902694-15902744	HEEpiC	esophagus:	n/a
46	chr17:16048731-16048781	Caco-2	colon:	n/a
47	chr17:16049075-16049125	SAEC	small airway:	n/a
48	chr17:15902541-15902591	NT2-D1	testis:	n/a
49	chr17:15902694-15902744	HMEC	breast:	n/a
50	chr17:15878667-15878717	Hepatocyte	liver:	n/a

(count:159 , 50 per page) page: 1 2 3 4

No.	Distal block	Cell Line	Cell type
1	chr17:15884386..15887034-chr17:15891736..15894055,2	K562	blood:
2	chr17:16032848..16034524-chr17:16038986..16041500,2	K562	blood:
3	chr17:15902250..15905783-chr17:15912924..15915838,3	K562	blood:
4	chr17:15987048..15989365-chr17:16117375..16120147,2	MCF-7	breast:
5	chr17:16039156..16040813-chr17:16042197..16044363,3	MCF-7	breast:
6	chr17:15902307..15904348-chr17:15929273..15931629,2	K562	blood:
7	chr17:16018918..16021715-chr17:16028326..16030856,2	K562	blood:
8	chr17:16052098..16053790-chr17:16057449..16059169,2	K562	blood:
9	chr17:16053038..16056179-chr17:16117147..16118977,3	MCF-7	breast:
10	chr17:16044141..16046370-chr17:16053985..16055741,2	K562	blood:
11	chr17:16073606..16076574-chr17:16118247..16120387,2	MCF-7	breast:
12	chr17:15873717..15876344-chr17:15882038..15883572,2	K562	blood:
13	chr17:16019956..16022065-chr17:16032573..16034409,2	K562	blood:
14	chr17:7860807..7861740-chr17:15973359..15973862,2	MCF-7	breast:
15	chr17:15900606..15905101-chr17:15906142..15909387,7	K562	blood:
16	chr17:15903246..15906052-chr17:15922157..15923827,2	K562	blood:
17	chr17:15978459..15981234-chr17:15984249..15986179,2	K562	blood:
18	chr17:15861872..15864251-chr17:15873905..15876165,2	K562	blood:
19	chr17:15968719..15971375-chr17:15978183..15980041,2	K562	blood:
20	chr17:15911426..15914074-chr17:15914828..15917002,2	K562	blood:
21	chr17:15860952..15862454-chr17:15899696..15901427,2	K562	blood:
22	chr17:15902634..15904373-chr17:15919410..15923219,3	MCF-7	breast:
23	chr17:16044585..16047415-chr17:16047650..16050913,4	MCF-7	breast:
24	chr17:15897555..15899197-chr17:15901808..15903510,2	MCF-7	breast:
25	chr17:16050219..16053553-chr17:16118923..16122033,3	MCF-7	breast:
26	chr17:15081168..15081829-chr17:15973460..15974306,2	MCF-7	breast:
27	chr17:15732191..15732987-chr17:15901490..15902453,2	MCF-7	breast:
28	chr17:15918143..15920477-chr17:15921495..15924893,3	K562	blood:
29	chr17:15920209..15922955-chr17:15924177..15926730,2	K562	blood:
30	chr17:16000342..16002762-chr17:16006571..16009952,3	K562	blood:
31	chr17:15873717..15876344-chr17:15882038..15883572,2	K562	blood:
32	chr17:15902603..15903275-chr3:150264080..150264900,2	Hela-S3	cervix:
33	chr17:15920209..15922955-chr17:15924177..15926730,2	K562	blood:
34	chr17:16072733..16074732-chr17:16076435..16078700,2	MCF-7	breast:
35	chr17:16048560..16051459-chr17:16118576..16121114,2	MCF-7	breast:
36	chr17:15918728..15924279-chr17:15927914..15931403,6	K562	blood:
37	chr13:21346241..21348378-chr17:16020761..16023781,3	MCF-7	breast:
38	chr17:15874769..15877467-chr17:15893088..15895547,2	MCF-7	breast:
39	chr17:16064418..16066551-chr17:16067921..16069430,2	K562	blood:
40	chr17:15901763..15905062-chr17:16117309..16121912,5	MCF-7	breast:
41	chr17:15935922..15937736-chr17:15946128..15948484,2	K562	blood:
42	chr17:15910738..15912780-chr17:15917922..15919655,2	K562	blood:
43	chr17:15884386..15887034-chr17:15891736..15894055,2	K562	blood:
44	chr17:16056577..16058620-chr17:16118032..16120275,2	MCF-7	breast:
45	chr17:16027095..16029014-chr17:16033144..16034993,2	MCF-7	breast:
46	chr17:16036451..16038520-chr17:16043203..16046091,2	MCF-7	breast:
47	chr17:15979525..15982244-chr17:16118246..16120149,2	K562	blood:
48	chr17:15866407..15869569-chr17:15884863..15887251,3	K562	blood:
49	chr17:15732199..15732717-chr17:15901816..15902443,2	K562	blood:
50	chr14:103851233..103852207-chr17:15902803..15903546,2	Hela-S3	cervix:

(count:16 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZSWIM7-2	chr17:15880893-15881227	NONHSAT145880
2	lnc-ZSWIM7-2	chr17:15881358-15881477	NONHSAT145880
3	lnc-ZSWIM7-4	chr17:15948169-15948278	NONHSAT145886
4	lnc-ZSWIM7-1	chr17:15949364-15949795	NONHSAT145888
5	lnc-ADORA2B-1	chr17:15884512-15885318	predAs_engstrom06_BC031588_1
6	lnc-AC002553.1-2	chr17:15947935-15948275	NONHSAT145887
7	lnc-ZSWIM7-2	chr17:15883557-15883681	NONHSAT145880
8	lnc-ZSWIM7-1	chr17:15948896-15948923	NONHSAT145888
9	lnc-AC002553.1-1	chr17:15943786-15944587	NONHSAT145885
10	lnc-ZSWIM7-1	chr17:15949376-15949795	ENSG00000248550
11	lnc-ZSWIM7-2	chr17:15879883-15880406	NONHSAT145880
12	lnc-TTC19-1	chr17:15987356-15987695	NONHSAT145891
13	lnc-PIGL-2	chr17:16095146-16095466	NONHSAT145896
14	lnc-ZSWIM7-6	chr17:15960288-15961051	NONHSAT145890
15	lnc-ZSWIM7-4	chr17:15947766-15948163	NONHSAT145886
16	lnc-ZSWIM7-6	chr17:15961221-15961249	NONHSAT145890

No data

(count:4 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	TTC19	hsa-miR-30c-5p	chr17:15930416-15930438
2	ADORA2B	hsa-miR-27b-3p	chr17:15878960-15878980
3	ADORA2B	hsa-miR-27b-3p	chr17:15878973-15878980
4	NCOR1	hsa-let-7b-5p	chr17:15934835-15934829

Variant related genes	Relation type
NCOR1	TF binding region
ENSG00000227782	TF binding region
ZSWIM7	TF binding region
RPLP1P11	TF binding region
RN7SL442P	TF binding region
ADORA2B	TF binding region
RNU6-314P	TF binding region
TTC19	TF binding region
RNU6-862P	TF binding region
ENSG00000233979	TF binding region
NCOR1	CpG island
ENSG00000227782	CpG island
ZSWIM7	CpG island
RPLP1P11	CpG island
RN7SL442P	CpG island
ADORA2B	CpG island
RNU6-314P	CpG island
TTC19	CpG island
RNU6-862P	CpG island
ENSG00000233979	CpG island
ENSG00000227782	chromatin interactions
ENSG00000075413	chromatin interactions
ENSG00000168291	chromatin interactions
ENSG00000243686	chromatin interactions
ENSG00000199674	chromatin interactions
ENSG00000234678	chromatin interactions
ENSG00000149547	chromatin interactions
ENSG00000126653	chromatin interactions
ENSG00000227790	chromatin interactions
ENSG00000144895	chromatin interactions
ENSG00000141027	chromatin interactions
ENSG00000231500	chromatin interactions
ENSG00000251192	chromatin interactions
ENSG00000199071	chromatin interactions
ENSG00000175061	chromatin interactions
ENSG00000163166	chromatin interactions
ENSG00000239221	chromatin interactions
ENSG00000150456	chromatin interactions
ENSG00000170425	chromatin interactions
ENSG00000108474	chromatin interactions
ENSG00000092931	chromatin interactions
ENSG00000144711	chromatin interactions
ENSG00000214941	chromatin interactions
ENSG00000011295	chromatin interactions
ENSG00000252383	chromatin interactions
ENSG00000251537	chromatin interactions
ENSG00000223501	chromatin interactions
ENSG00000112081	chromatin interactions
ENSG00000161547	chromatin interactions
ENSG00000230844	chromatin interactions
ENSG00000266261	chromatin interactions
ENSG00000143933	chromatin interactions
ENSG00000163435	chromatin interactions
ENSG00000120742	chromatin interactions
BDH2	miRNA target sites

Extended variants
information (count: 8877 )
Associated
traits (count: 179 )

Variant overlapped rSNPs/rCNVs (count:8877 , 50 per page) page: 1 2 3 4 5 6 7 ... 178

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2779211	chr17:15875935-15875936	Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs537606252	chr17:15875942-15875943	Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs565678960	chr17:15875945-15875946	Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs528733063	chr17:15875950-15875951	Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs73276049	chr17:15875978-15875979	Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs112014590	chr17:15876003-15876004	Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs78804732	chr17:15876021-15876022	Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs145304260	chr17:15876167-15876168	Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs569700772	chr17:15876180-15876181	Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs372316087	chr17:15876220-15876221	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs570926388	chr17:15876234-15876235	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs539951296	chr17:15876272-15876273	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs78084481	chr17:15876308-15876309	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs114898322	chr17:15876374-15876375	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
15	rs140586185	chr17:15876385-15876386	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs554883698	chr17:15876398-15876399	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs574273286	chr17:15876405-15876406	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
18	rs543183404	chr17:15876474-15876475	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs563158062	chr17:15876511-15876512	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs576489576	chr17:15876519-15876520	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs149727522	chr17:15876606-15876607	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
22	rs535210212	chr17:15876626-15876627	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
23	rs2779212	chr17:15876655-15876656	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
24	rs548206516	chr17:15876671-15876672	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
25	rs145558813	chr17:15876702-15876703	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
26	rs148966893	chr17:15876721-15876722	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
27	rs191844349	chr17:15876745-15876746	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
28	rs551156453	chr17:15876764-15876765	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
29	rs77918429	chr17:15876767-15876768	Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
30	rs201216786	chr17:15876807-15876808	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
31	rs183988626	chr17:15876891-15876892	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
32	rs372818752	chr17:15876906-15876907	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs374769699	chr17:15876925-15876926	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs376455761	chr17:15876952-15876953	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs535871498	chr17:15876964-15876965	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs555500957	chr17:15876991-15876992	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs72821756	chr17:15876993-15876994	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs536957040	chr17:15877001-15877002	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs556690566	chr17:15877035-15877036	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs143683733	chr17:15877049-15877050	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs545567760	chr17:15877084-15877085	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs146550240	chr17:15877134-15877135	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs534324848	chr17:15877138-15877139	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs572726764	chr17:15877156-15877157	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs557983285	chr17:15877164-15877165	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs76547099	chr17:15877186-15877187	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs547112256	chr17:15877188-15877189	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs561678857	chr17:15877190-15877191	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs74255314	chr17:15877191-15877192	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs187318810	chr17:15877195-15877196	Weak transcription Enhancers Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:179)

Disease	PMID	Source
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	17603634	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	19435819	CNVD
Non-small cell lung cancer	19010865	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Hepatocellular carcinoma	18803288	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Esophageal adenocarcinoma	18519675	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Chordoma	21602918	CNVD
Miller-Dieker syndrome	22283845	CNVD
Non-syndromic sensorineural hearing loss	17457615	CNVD
Cancer	22429812	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Ewing''s sarcoma	21437220	CNVD
Follicular lymphoma	19010834	CNVD
Colorectal cancer	20709793	CNVD
Acute myeloid leukemia	16864856	CNVD
Endometrial cancer	22040021	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Breast cancer	22028636	CNVD
Breast cancer	20837533	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
colon cancer	17210682	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Basal cell lymphoma	17053054	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Cancer	16751803	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Chronic lymphocytic leukemia	17971485	CNVD
Basal cell lymphoma	17170743	CNVD
Breast cancer	16461572	CNVD
Colorectal cancer	16272173	CNVD
Follicular lymphoma	17170743	CNVD
Human rectal carcinomas	16397240	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Ovarian cancer	22174824	CNVD
Moyamoya disease	22323933	CNVD
small cell lung cancer	20016488	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	21251322	CNVD
Myelodysplastic syndrome	21251322	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20724749	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Acute myeloid leukemia	17237825	CNVD
Colorectal cancer	21645411	CNVD
HIV/AIDS	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
HIV/AIDS	17953491	CNVD
HIV/AIDS	20877625	CNVD
Immune disease	21076436	CNVD
Rheumatoid arthritis	17953491	CNVD
Type 1 diabetes	17953491	CNVD
HIV/AIDS	15637236	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Ovarian cancer	21781307	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Neurofibromatosis	18196300	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Multiple myeloma	16616336	CNVD
Multiple myeloma	17550852	CNVD
Pancreatic cancer	21811587	CNVD
Autism	17322880	CNVD
Hereditary neuropathy with liability to pressure palsy	19521722	CNVD
Schizophrenia	19571808	CNVD
Schizophrenia	19955444	CNVD
Charcot-marie-tooth disease	18787571	CNVD
Breast cancer	20409316	CNVD
Autism	18414403	CNVD
Breast cancer	17001317	CNVD
Rhabdomyosarcoma	16790082	CNVD
Myelofibrosis	22110671	CNVD
Peripheral neuropathy	21193943	CNVD
Schizophrenia	20587603	CNVD
Schizophrenia	22958593	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Ovarian cancer	20844748	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Charcot-marie-tooth disease	16463004	CNVD
Osteosarcoma	22292074	CNVD
Charcot	16760730	CNVD
Mental retardation	17901693	CNVD
ovarian endometriomas	16273235	CNVD
Ovarian cancer	21720365	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17142309	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Autism	22102821	CNVD
Gastric cancer	18160780	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Smith-Magenis syndrome	18923513	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	16272173	CNVD
Austim spectrum disorder	21302340	CNVD
Autism	22492990	CNVD
Congenital abnormalities	21549014	CNVD
Developmental delay	18414209	CNVD
Developmental delay	21549014	CNVD
Epilepsy	20970697	CNVD
Mental retardation	18414209	CNVD
Mental retardation	21549014	CNVD
Smith-Magenis syndrome	21981782	CNVD
Smith-Magenis syndrome	20188345	CNVD
Smith-Magenis syndrome	16775514	CNVD
Smith-Magenis syndrome	22585170	CNVD
Smith-Magenis syndrome	22241247	CNVD
Autism	20970697	CNVD
Mental retardation	19951919	CNVD
Potocki-Lupski syndrome	21271655	CNVD
Potocki-lupski syndrome	17357070	CNVD
Potocki-lupski syndrome	20110824	CNVD
Potocki-lupski syndrome	18923514	CNVD
Potocki-lupski syndrome	22241247	CNVD
Potocki-lupski syndrome	20188345	CNVD
Schizophrenia	21399695	CNVD
Mental retardation	16773131	CNVD
Adenocarcinoma	19607727	CNVD
Squamous cell cancer	19607727	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Charcot-marie-tooth disease	22470819	CNVD
Neurofibromatosis	22470819	CNVD
Neuropathy	22470819	CNVD
Smith-Magenis syndrome	18301319	CNVD
Smith-Magenis syndrome	17357070	CNVD
Smith-Magenis syndrome	18469339	CNVD
Smith-Magenis syndrome	22241097	CNVD
Smith-Magenis syndrome	22470819	CNVD
Tourette syndrome	18923514	CNVD
Type 1 diabetes	22470819	CNVD
Potocki-lupski syndrome	18469339	CNVD
Follicular lymphoma	20505157	CNVD
T-cell lymphomas	19863542	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Neuropathy	17597781	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	17015230	CNVD
Smith-Magenis syndrome	17597781	CNVD
Potocki-lupski syndrome	18059269	CNVD
Potocki-lupski syndrome	17597781	CNVD
Mental retardation	17847001	CNVD

Chromatin state (count:7532 , 50 per page) page: 1 2 3 4 5 6 7 ... 151

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15867400-15878000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr17:15868800-15880000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr17:15870200-15879600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr17:15870200-15880200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr17:15870200-15883600	Weak transcription	Fetal Heart	heart
6	chr17:15870400-15877600	Weak transcription	Fetal Brain Female	brain
7	chr17:15870400-15877600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr17:15870400-15877800	Weak transcription	Adipose Nuclei	Adipose
9	chr17:15870400-15877800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr17:15870400-15877800	Weak transcription	Left Ventricle	heart
11	chr17:15870400-15878000	Weak transcription	Fetal Lung	lung
12	chr17:15870400-15878000	Weak transcription	Fetal Stomach	stomach
13	chr17:15870400-15878000	Weak transcription	A549	lung
14	chr17:15870400-15878200	Weak transcription	Osteobl	bone
15	chr17:15870400-15879600	Weak transcription	Brain Anterior Caudate	brain
16	chr17:15870400-15880000	Weak transcription	Brain Germinal Matrix	brain
17	chr17:15870400-15881200	Weak transcription	Fetal Kidney	kidney
18	chr17:15870400-15883600	Weak transcription	Brain Angular Gyrus	brain
19	chr17:15870400-15883800	Weak transcription	Gastric	stomach
20	chr17:15870400-15902400	Weak transcription	Small Intestine	intestine
21	chr17:15870600-15876800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr17:15870600-15877600	Weak transcription	HSMM	muscle
23	chr17:15870600-15877800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr17:15870600-15877800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr17:15870600-15878000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr17:15870600-15878200	Weak transcription	NHLF	lung
27	chr17:15870600-15878400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr17:15870600-15880000	Weak transcription	Brain Substantia Nigra	brain
29	chr17:15870600-15880000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr17:15870600-15883600	Weak transcription	Pancreas	Pancrea
31	chr17:15870600-15883800	Weak transcription	Fetal Brain Male	brain
32	chr17:15870800-15877600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr17:15870800-15878000	Weak transcription	Brain Hippocampus Middle	brain
34	chr17:15870800-15878200	Weak transcription	Fetal Intestine Large	intestine
35	chr17:15870800-15880000	Weak transcription	Primary B cells from cord blood	blood
36	chr17:15870800-15902400	Weak transcription	Esophagus	oesophagus
37	chr17:15871000-15878000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr17:15871000-15878000	Weak transcription	Fetal Intestine Small	intestine
39	chr17:15871000-15878400	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr17:15871000-15878800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr17:15871000-15879800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr17:15871200-15876800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr17:15871200-15877400	Weak transcription	Primary T cells from cord blood	blood
44	chr17:15871200-15877800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr17:15871200-15877800	Weak transcription	Fetal Thymus	thymus
46	chr17:15871200-15878000	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr17:15871200-15878000	Weak transcription	Spleen	Spleen
48	chr17:15871200-15878400	Weak transcription	HUVEC	blood vessel
49	chr17:15871200-15878600	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr17:15871400-15876400	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links