Variant report

Variant	nsv1055501
Chromosome Location	chr19:24507112-24596738
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7310 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:7310 , 50 per page) page: 1 2 3 4 5 6 7 ... 147

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs370051850	chr19:24507131-24507132	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs577803462	chr19:24507135-24507136	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs114828029	chr19:24507143-24507144	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs563826151	chr19:24507150-24507151	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs140722172	chr19:24507156-24507157	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs62114119	chr19:24507186-24507187	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs145190995	chr19:24507188-24507189	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs528157152	chr19:24507199-24507200	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs546703309	chr19:24507218-24507219	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs182778764	chr19:24507222-24507223	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs564854178	chr19:24507223-24507224	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs538833365	chr19:24507239-24507240	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs563146840	chr19:24507242-24507243	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs550835677	chr19:24507260-24507261	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs531991514	chr19:24507273-24507274	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs373035980	chr19:24507276-24507277	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs536551074	chr19:24507277-24507278	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs576641699	chr19:24507282-24507283	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs555447772	chr19:24507292-24507293	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs115504098	chr19:24507316-24507317	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs534733816	chr19:24507317-24507318	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs186680073	chr19:24507322-24507323	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs369192136	chr19:24507342-24507343	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs577764178	chr19:24507355-24507356	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs113818309	chr19:24507370-24507371	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs545154866	chr19:24507376-24507377	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs75644937	chr19:24507409-24507410	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs77629255	chr19:24507410-24507411	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs200866271	chr19:24507439-24507440	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs80152310	chr19:24507445-24507446	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs575818126	chr19:24507446-24507447	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs191485390	chr19:24507455-24507456	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs7339456	chr19:24507463-24507464	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs183674261	chr19:24507469-24507470	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs540276748	chr19:24507482-24507483	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs189063817	chr19:24507485-24507486	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs532256313	chr19:24507491-24507492	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs550457214	chr19:24507507-24507508	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs193148194	chr19:24507511-24507512	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs529913080	chr19:24507516-24507517	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs200568542	chr19:24507563-24507564	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs185237821	chr19:24507571-24507572	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs541491738	chr19:24507577-24507578	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs566460021	chr19:24507581-24507582	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs369183423	chr19:24507605-24507606	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs534247013	chr19:24507613-24507614	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs534695712	chr19:24507639-24507640	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs115961178	chr19:24507648-24507649	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs190118649	chr19:24507667-24507668	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs571357916	chr19:24507711-24507712	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
Lung cancer	18438408	CNVD

Chromatin state (count:233 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24503800-24512000	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:24507800-24577200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr19:24508000-24573400	ZNF genes & repeats	Liver	Liver
4	chr19:24508800-24569000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr19:24509200-24570800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr19:24509400-24510200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr19:24513000-24571800	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr19:24513400-24527000	ZNF genes & repeats	Dnd41	blood
9	chr19:24513600-24530800	ZNF genes & repeats	Psoas Muscle	Psoas
10	chr19:24513800-24518200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr19:24514400-24519400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
12	chr19:24515400-24516200	Active TSS	Right Atrium	heart
13	chr19:24515400-24517200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
14	chr19:24515400-24519400	ZNF genes & repeats	Brain Hippocampus Middle	brain
15	chr19:24517400-24519600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
16	chr19:24517800-24520200	Active TSS	Aorta	Aorta
17	chr19:24520200-24522200	Weak transcription	Aorta	Aorta
18	chr19:24521200-24522200	Active TSS	Fetal Heart	heart
19	chr19:24521200-24526600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
20	chr19:24521400-24521600	ZNF genes & repeats	Fetal Lung	lung
21	chr19:24522000-24576600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
22	chr19:24522200-24523800	Active TSS	Aorta	Aorta
23	chr19:24523000-24523200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr19:24523200-24526400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
25	chr19:24523800-24524200	Weak transcription	Aorta	Aorta
26	chr19:24524000-24526600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
27	chr19:24524600-24526400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
28	chr19:24524800-24526600	ZNF genes & repeats	Colon Smooth Muscle	Colon
29	chr19:24524800-24529600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr19:24524800-24530400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
31	chr19:24525200-24526400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
32	chr19:24525200-24542000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
33	chr19:24525400-24577200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
34	chr19:24525600-24526800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
35	chr19:24525600-24526800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
36	chr19:24525600-24526800	ZNF genes & repeats	HepG2	liver
37	chr19:24525800-24526000	Enhancers	Hela-S3	cervix
38	chr19:24525800-24526400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
39	chr19:24525800-24526400	ZNF genes & repeats	Brain Angular Gyrus	brain
40	chr19:24525800-24526600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
41	chr19:24525800-24526800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr19:24526000-24526200	Flanking Bivalent TSS/Enh	ES-WA7 Cell Line	embryonic stem cell
43	chr19:24526000-24526200	ZNF genes & repeats	Esophagus	oesophagus
44	chr19:24526000-24526200	Active TSS	Right Atrium	heart
45	chr19:24526000-24526200	Flanking Bivalent TSS/Enh	NHLF	lung
46	chr19:24526000-24526400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
47	chr19:24526000-24526400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr19:24526000-24526400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr19:24526000-24526400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr19:24526000-24526400	Flanking Bivalent TSS/Enh	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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