Variant report

Variant	nsv1056707
Chromosome Location	chr18:231508-290812
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr18:269422-269886	HepG2	liver:	n/a	n/a
2	ARID3A	chr18:286488-286736	HepG2	liver:	n/a	n/a
3	ARID3A	chr18:267953-268346	HepG2	liver:	n/a	n/a
4	ARID3A	chr18:268051-268209	K562	blood:	n/a	n/a
5	ATF1	chr18:267856-268252	K562	blood:	n/a	n/a
6	ATF2	chr18:267573-268458	GM12878	blood:	n/a	n/a
7	ATF2	chr18:267677-268450	GM12878	blood:	n/a	n/a
8	ATF2	chr18:267857-268299	H1-hESC	embryonic stem cell:	n/a	n/a
9	ATF2	chr18:267806-268299	H1-hESC	embryonic stem cell:	n/a	n/a
10	ATF3	chr18:267636-268296	H1-hESC	embryonic stem cell:	n/a	chr18:268062-268075 chr18:268064-268072 chr18:268065-268072 chr18:268061-268076 chr18:268062-268075 chr18:268062-268072 chr18:268061-268074 chr18:268062-268072 chr18:268053-268073 chr18:268061-268072 chr18:268062-268073
11	ATF3	chr18:267842-268358	GM12878	blood:	n/a	chr18:268062-268075 chr18:268064-268072 chr18:268065-268072 chr18:268061-268076 chr18:268062-268075 chr18:268062-268072 chr18:268061-268074 chr18:268062-268072 chr18:268053-268073 chr18:268061-268072 chr18:268062-268073
12	ATF3	chr18:267854-268179	HepG2	liver:	n/a	chr18:268062-268075 chr18:268064-268072 chr18:268065-268072 chr18:268061-268076 chr18:268062-268075 chr18:268062-268072 chr18:268061-268074 chr18:268062-268072 chr18:268053-268073 chr18:268061-268072 chr18:268062-268073
13	ATF3	chr18:267819-268244	K562	blood:	n/a	chr18:268062-268075 chr18:268064-268072 chr18:268065-268072 chr18:268061-268076 chr18:268062-268075 chr18:268062-268072 chr18:268061-268074 chr18:268062-268072 chr18:268053-268073 chr18:268061-268072 chr18:268062-268073
14	ATF3	chr18:267910-268154	H1-hESC	embryonic stem cell:	n/a	chr18:268062-268075 chr18:268064-268072 chr18:268065-268072 chr18:268061-268076 chr18:268062-268075 chr18:268062-268072 chr18:268061-268074 chr18:268062-268072 chr18:268053-268073 chr18:268061-268072 chr18:268062-268073
15	ATF3	chr18:267904-268183	GM12878	blood:	n/a	chr18:268062-268075 chr18:268064-268072 chr18:268065-268072 chr18:268061-268076 chr18:268062-268075 chr18:268062-268072 chr18:268061-268074 chr18:268062-268072 chr18:268053-268073 chr18:268061-268072 chr18:268062-268073
16	BACH1	chr18:267979-268355	H1-hESC	embryonic stem cell:	n/a	n/a
17	BATF	chr18:267919-268509	GM12878	blood:	n/a	n/a
18	BCL11A	chr18:267902-268405	GM12878	blood:	n/a	chr18:268153-268162 chr18:268049-268062
19	BCL3	chr18:267793-268331	A549	lung:	n/a	chr18:268153-268162 chr18:268049-268062
20	BCL3	chr18:267887-268393	GM12878	blood:	n/a	chr18:268153-268162 chr18:268049-268062
21	BCL3	chr18:267839-268276	A549	lung:	n/a	chr18:268153-268162 chr18:268049-268062
22	BCLAF1	chr18:267773-268502	GM12878	blood:	n/a	chr18:268153-268162 chr18:268049-268062
23	BCLAF1	chr18:267804-269077	GM12878	blood:	n/a	chr18:268153-268162 chr18:268049-268062
24	BHLHE40	chr18:267862-268321	K562	blood:	n/a	chr18:268046-268062 chr18:268047-268063
25	BHLHE40	chr18:267842-268511	GM12878	blood:	n/a	chr18:268046-268062 chr18:268047-268063
26	BHLHE40	chr18:268183-268376	A549	lung:	n/a	n/a
27	BHLHE40	chr18:267852-268323	HepG2	liver:	n/a	chr18:268046-268062 chr18:268047-268063
28	BRCA1	chr18:267927-268244	Hela-S3	cervix:	n/a	n/a
29	BRCA1	chr18:267974-268246	H1-hESC	embryonic stem cell:	n/a	n/a
30	BRCA1	chr18:267916-268222	HepG2	liver:	n/a	n/a
31	CBX3	chr18:268653-269146	K562	blood:	n/a	n/a
32	CBX3	chr18:267701-268641	K562	blood:	n/a	n/a
33	CBX3	chr18:267877-268270	K562	blood:	n/a	n/a
34	CBX3	chr18:271857-272187	K562	blood:	n/a	n/a
35	CCNT2	chr18:267628-268513	K562	blood:	n/a	n/a
36	CEBPB	chr18:269678-269795	K562	blood:	n/a	n/a
37	CEBPB	chr18:269538-269869	K562	blood:	n/a	n/a
38	CEBPB	chr18:268092-268184	H1-hESC	embryonic stem cell:	n/a	n/a
39	CEBPB	chr18:267818-268289	K562	blood:	n/a	n/a
40	CEBPB	chr18:267829-268561	GM12878	blood:	n/a	n/a
41	CEBPD	chr18:267772-268726	K562	blood:	n/a	n/a
42	CEBPD	chr18:267595-268288	HepG2	liver:	n/a	n/a
43	CHD1	chr18:267960-268495	GM12878	blood:	n/a	chr18:268135-268145
44	CHD1	chr18:268180-268771	H1-hESC	embryonic stem cell:	n/a	n/a
45	CHD2	chr18:267987-268408	K562	blood:	n/a	chr18:268135-268145
46	CHD2	chr18:267876-268311	HepG2	liver:	n/a	chr18:268135-268145
47	CHD2	chr18:267938-268278	Hela-S3	cervix:	n/a	chr18:268135-268145
48	CHD2	chr18:267902-268387	GM12878	blood:	n/a	chr18:268135-268145
49	CHD2	chr18:267821-268371	H1-hESC	embryonic stem cell:	n/a	chr18:268135-268145
50	CREB1	chr18:267596-268345	ECC-1	luminal epithelium:	n/a	chr18:268062-268075

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr18:268256-268306	AG09309	skin:	n/a
2	chr18:268166-268216	U87	brain:	n/a
3	chr18:268256-268306	AG09309	skin:	n/a
4	chr18:268166-268216	U87	brain:	n/a
5	chr18:271673-271723	AG04450	lung:	fetal
6	chr18:268166-268216	GM06990	blood:	n/a
7	chr18:271673-271723	PFSK-1	brain:	n/a
8	chr18:267711-267761	PrEC	prostate:	n/a
9	chr18:268135-268185	ovcar-3	ovarian:	n/a
10	chr18:268031-268081	PFSK-1	brain:	n/a
11	chr18:268135-268185	AG04450	lung:	fetal
12	chr18:264576-264626	GM12892	blood:	n/a
13	chr18:268068-268118	GM12891	blood:	n/a
14	chr18:267637-267687	PFSK-1	brain:	n/a
15	chr18:267637-267687	PrEC	prostate:	n/a
16	chr18:268031-268081	NT2-D1	testis:	n/a
17	chr18:268256-268306	NHBE	bronchial:	n/a
18	chr18:264576-264626	AG10803	skin:	n/a
19	chr18:271673-271723	PANC-1	pancreas:	n/a
20	chr18:271673-271723	AG04449	skin:	fetal
21	chr18:268166-268216	HAEpiC	amniotic membrane:	n/a
22	chr18:271673-271723	H1-hESC	embryonic stem cell:	embryo
23	chr18:271673-271723	HCPEpiC	choroid plexus:	n/a
24	chr18:268256-268306	SK-N-MC	brain:	n/a
25	chr18:268184-268234	NH-A	brain:	n/a
26	chr18:268166-268216	HIPEpiC	eye:	n/a
27	chr18:268131-268181	HMEC	breast:	n/a
28	chr18:268184-268234	RPTEC	kidney:	n/a
29	chr18:267711-267761	AG04450	lung:	fetal
30	chr18:271673-271723	T-47D	breast:	n/a
31	chr18:268381-268431	K562	blood:	n/a
32	chr18:268601-268651	GM12891	blood:	n/a
33	chr18:268131-268181	Jurkat	blood:	n/a
34	chr18:268031-268081	AG04450	lung:	fetal
35	chr18:271673-271723	A549	lung:	n/a
36	chr18:271673-271723	K562	blood:	n/a
37	chr18:268601-268651	HMEC	breast:	n/a
38	chr18:267637-267687	HMEC	breast:	n/a
39	chr18:268381-268431	SK-N-SH_RA	brain:	n/a
40	chr18:268381-268431	GM06990	blood:	n/a
41	chr18:268601-268651	PFSK-1	brain:	n/a
42	chr18:268068-268118	AG09319	gingival:	n/a
43	chr18:268131-268181	ProgFib	skin:	n/a
44	chr18:268381-268431	H1-hESC	embryonic stem cell:	embryo
45	chr18:268166-268216	PrEC	prostate:	n/a
46	chr18:268166-268216	HRPEpiC	eye:	n/a
47	chr18:268031-268081	ovcar-3	ovarian:	n/a
48	chr18:271673-271723	HPAEpiC	pulmonary alveolar:	n/a
49	chr18:268031-268081	HIPEpiC	eye:	n/a
50	chr18:268135-268185	HEK293	kidney:	embryo

No.	Distal block	Cell Line	Cell type
1	chr18:250566..253483-chr18:259670..262820,3	K562	blood:
2	chr18:234980..237687-chr18:246158..248551,2	K562	blood:
3	chr18:110119..112537-chr18:266561..268595,2	MCF-7	breast:
4	chr18:266657..270720-chr18:273015..278448,7	MCF-7	breast:
5	chr18:269547..271961-chr18:280130..281760,2	K562	blood:
6	chr1:147806762..147807332-chr18:268331..269254,2	Hela-S3	cervix:
7	chr18:240829..243989-chr18:256150..258223,3	K562	blood:
8	chr18:248724..251192-chr18:298155..299664,2	K562	blood:
9	chr18:245734..247470-chr18:268204..270574,2	K562	blood:
10	chr18:219579..224693-chr18:231367..234811,5	K562	blood:
11	chr18:250566..253483-chr18:259670..262820,3	K562	blood:
12	chr18:211515..213254-chr18:241268..242902,2	K562	blood:
13	chr18:250843..253350-chr18:266351..269442,3	MCF-7	breast:
14	chr18:229127..231742-chr18:269257..272237,2	K562	blood:
15	chr18:264152..266955-chr18:267576..271730,4	MCF-7	breast:
16	chr18:239843..241900-chr18:243118..245785,2	K562	blood:
17	chr18:157295..159730-chr18:266988..268701,2	MCF-7	breast:
18	chr18:225092..228063-chr18:231717..233531,3	K562	blood:
19	chr18:248314..250346-chr18:271820..273799,2	K562	blood:
20	chr18:253259..255595-chr18:265697..268644,2	K562	blood:
21	chr18:183411..185886-chr18:243582..245217,2	MCF-7	breast:
22	chr18:248314..250346-chr18:271820..273799,2	K562	blood:
23	chr18:158012..160007-chr18:265808..268303,2	MCF-7	breast:
24	chr18:227929..230720-chr18:265725..267925,3	K562	blood:
25	chr18:266113..269077-chr18:710034..713387,3	K562	blood:
26	chr18:286089..286649-chr18:19535847..19536611,2	K562	blood:
27	chr18:233093..235805-chr18:238186..240596,2	MCF-7	breast:
28	chr18:267452..268053-chr9:134269416..134270075,2	Hela-S3	cervix:
29	chr18:231648..233697-chr18:238465..240469,2	K562	blood:
30	chr18:286251..287151-chr18:616097..616992,3	MCF-7	breast:
31	chr18:233093..235805-chr18:238186..240596,2	MCF-7	breast:
32	chr18:263619..266135-chr18:272357..275080,2	MCF-7	breast:
33	chr18:245161..246691-chr18:267290..268798,2	MCF-7	breast:
34	chr18:269547..271961-chr18:280130..281760,2	K562	blood:
35	chr18:273600..276346-chr18:278461..281773,3	MCF-7	breast:
36	chr18:251595..253868-chr18:269090..271217,2	K562	blood:
37	chr18:273687..277951-chr18:283700..285982,3	K562	blood:
38	chr18:158336..160794-chr18:268769..270393,2	K562	blood:
39	chr18:266563..269513-chr18:596555..599263,2	K562	blood:
40	chr18:249334..252987-chr18:265974..268103,4	MCF-7	breast:
41	chr18:245161..246691-chr18:267290..268798,2	MCF-7	breast:
42	chr18:272315..274100-chr18:321177..323834,2	K562	blood:
43	chr18:229127..231742-chr18:269257..272237,2	K562	blood:
44	chr18:251747..253552-chr18:262672..265291,2	K562	blood:
45	chr18:269653..272578-chr18:297355..299675,2	K562	blood:
46	chr17:58235617..58237608-chr18:268202..269943,2	MCF-7	breast:
47	chr18:267782..268602-chr2:228189553..228190377,2	Hela-S3	cervix:
48	chr18:273825..276341-chr18:276906..279543,2	K562	blood:
49	chr18:225339..228063-chr18:231717..233482,2	K562	blood:
50	chr18:254095..260758-chr18:263922..270842,11	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-USP14-3	chr18:268148-270278	ENSG00000263884.1
2	lnc-USP14-6	chr18:270815-271054	NONHSAT056835
3	lnc-COLEC12-6	chr18:253324-253897	expReg_chr18_62_-

Variant related genes	Relation type
THOC1	TF binding region
ENSG00000263884	TF binding region
THOC1	CpG island
ENSG00000263884	CpG island
ENSG00000176912	chromatin interactions
ENSG00000168958	chromatin interactions
ENSG00000176890	chromatin interactions
ENSG00000079134	chromatin interactions
ENSG00000132199	chromatin interactions
ENSG00000263006	chromatin interactions
ENSG00000079101	chromatin interactions
ENSG00000130723	chromatin interactions
ENSG00000101557	chromatin interactions
ENSG00000263884	chromatin interactions
ENSG00000236432	chromatin interactions
ENSG00000202408	chromatin interactions

Extended variants
information (count: 1922 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:1922 , 50 per page) page: 1 2 3 4 5 6 7 ... 39

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs535329046	chr18:231531-231532	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs553348570	chr18:231593-231594	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs577840082	chr18:231598-231599	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs188550330	chr18:231647-231648	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs375654113	chr18:231677-231678	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs151231782	chr18:231730-231731	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs12606185	chr18:231763-231764	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs140389390	chr18:231768-231769	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs35879317	chr18:231823-231824	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
10	rs367673084	chr18:231844-231845	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs542308674	chr18:232029-232030	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs560945027	chr18:232031-232032	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs193166699	chr18:232033-232034	Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs36086356	chr18:232108-232109	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs184180908	chr18:232114-232115	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs187091692	chr18:232127-232128	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs532373842	chr18:232128-232129	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs201666777	chr18:232180-232181	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs550776758	chr18:232259-232260	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs570200880	chr18:232267-232268	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs150310004	chr18:232280-232281	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs549161448	chr18:232285-232286	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs654019	chr18:232337-232338	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
24	rs567659275	chr18:232340-232341	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs534674870	chr18:232405-232406	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs553657916	chr18:232413-232414	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs569661336	chr18:232427-232428	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs191546736	chr18:232450-232451	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs528692054	chr18:232456-232457	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs538888094	chr18:232457-232458	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs557129972	chr18:232462-232463	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs183746958	chr18:232471-232472	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs542719629	chr18:232482-232483	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs554336638	chr18:232483-232484	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs188137784	chr18:232488-232489	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs539823907	chr18:232490-232491	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs565210111	chr18:232506-232507	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs16974404	chr18:232508-232509	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs544462830	chr18:232522-232523	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs562675244	chr18:232560-232561	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs141918329	chr18:232656-232657	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs549470748	chr18:232668-232669	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs79575842	chr18:232777-232778	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs370579479	chr18:232791-232792	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs66471487	chr18:232792-232793	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs567633987	chr18:232794-232795	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs552109804	chr18:232824-232825	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs546669181	chr18:232863-232864	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs571655191	chr18:232913-232914	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs182291785	chr18:232961-232962	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Cancer	20164920	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Esophageal cancer	21851588	CNVD
Myelofibrosis	22110671	CNVD
Heart disease	21282601	CNVD
Breast cancer	17899364	CNVD
Cancer	17160897	CNVD
Breast cancer	20409316	CNVD
Gastrointestinal cancer	17018589	CNVD
prenatal diagnosis	20453657	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Renal cell carcinoma	18765545	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	18172304	CNVD
Intellectual disability	22102821	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Acute myeloid leukemia	16864856	CNVD
Seminomas	18059402	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Kartagener syndrome	16639409	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Cancer	21183584	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Human rectal carcinomas	16397240	CNVD
Colorectal cancer	16272173	CNVD
Colorectal cancer	19150955	CNVD
Follicular lymphoma	20505157	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	18923191	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Trisomy 18 syndrome	17576883	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Melanoma	17363583	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21785460	CNVD
lymphocytic leukemia	21291569	CNVD
Autism	20808228	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Barrett''s syndrome	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Multiple myeloma	17550852	CNVD
Cancer	20164919	CNVD
Amyotrophic lateral sclerosis	20685689	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Developmental delay	21147756	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Autism	21865298	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ovarian clear cell carcinoma	21343371	CNVD

Chromatin state (count:1440 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:195400-233000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr18:199800-251000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr18:212000-256400	Weak transcription	Gastric	stomach
4	chr18:214400-251600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:214400-252000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr18:215800-244000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr18:217200-247000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr18:218000-267400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr18:218200-245400	Weak transcription	Aorta	Aorta
10	chr18:218400-245600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr18:218600-240800	Weak transcription	Spleen	Spleen
12	chr18:218600-244800	Weak transcription	Psoas Muscle	Psoas
13	chr18:218600-245200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr18:218600-245400	Weak transcription	Esophagus	oesophagus
15	chr18:218600-245600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr18:218600-245600	Weak transcription	Brain Angular Gyrus	brain
17	chr18:218600-248200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr18:218600-250400	Weak transcription	Colonic Mucosa	Colon
19	chr18:218600-261400	Weak transcription	Pancreas	Pancrea
20	chr18:218600-267200	Weak transcription	Stomach Mucosa	stomach
21	chr18:218800-241000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr18:218800-241400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr18:219000-245400	Weak transcription	Small Intestine	intestine
24	chr18:219000-247200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr18:219000-251400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr18:219000-251600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr18:219000-267200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr18:219000-267200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr18:219800-240400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr18:220400-244400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr18:221800-232200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr18:224000-235200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr18:224000-244400	Weak transcription	Fetal Brain Male	brain
34	chr18:224000-248000	Weak transcription	NHLF	lung
35	chr18:224200-244400	Weak transcription	Colon Smooth Muscle	Colon
36	chr18:224200-250600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr18:224800-245200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr18:225000-244400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr18:225000-244600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr18:225000-250800	Weak transcription	HSMMtube	muscle
41	chr18:225200-254600	Weak transcription	Right Ventricle	heart
42	chr18:225400-245200	Weak transcription	Brain Substantia Nigra	brain
43	chr18:225600-234000	Weak transcription	NHDF-Ad	bronchial
44	chr18:225600-240200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr18:225600-240400	Weak transcription	Hela-S3	cervix
46	chr18:225600-245400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr18:225600-251200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr18:225800-246400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr18:225800-250400	Weak transcription	Brain Hippocampus Middle	brain
50	chr18:226000-239400	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links