Variant report

Variant	nsv1056902
Chromosome Location	chr17:18289392-18446667
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:964)
CpG islands
(count:1527)
Chromatin interactive
region (count:2)
LncRNA
region (count:84)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:964 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr17:18314118-18314356	H1-hESC	embryonic stem cell:	n/a	n/a
2	BACH1	chr17:18355389-18355575	H1-hESC	embryonic stem cell:	n/a	n/a
3	BACH1	chr17:18362390-18362672	H1-hESC	embryonic stem cell:	n/a	n/a
4	BATF	chr17:18411051-18411300	GM12878	blood:	n/a	chr17:18411156-18411166 chr17:18411155-18411166
5	BATF	chr17:18379787-18380078	GM12878	blood:	n/a	n/a
6	BATF	chr17:18301531-18301764	GM12878	blood:	n/a	n/a
7	BATF	chr17:18306836-18307314	GM12878	blood:	n/a	n/a
8	BATF	chr17:18379801-18380128	GM12878	blood:	n/a	n/a
9	BATF	chr17:18410950-18411370	GM12878	blood:	n/a	chr17:18411156-18411166 chr17:18411155-18411166
10	BATF	chr17:18306799-18307466	GM12878	blood:	n/a	n/a
11	BATF	chr17:18396335-18396562	GM12878	blood:	n/a	chr17:18396479-18396490
12	BATF	chr17:18396259-18396664	GM12878	blood:	n/a	chr17:18396479-18396490
13	BCL11A	chr17:18306911-18307191	GM12878	blood:	n/a	n/a
14	BCL11A	chr17:18424410-18424651	GM12878	blood:	n/a	n/a
15	BCL11A	chr17:18379825-18380074	GM12878	blood:	n/a	n/a
16	BCL11A	chr17:18378052-18378384	GM12878	blood:	n/a	n/a
17	BCL11A	chr17:18306873-18307246	GM12878	blood:	n/a	n/a
18	BCL11A	chr17:18379766-18380162	GM12878	blood:	n/a	n/a
19	BCL3	chr17:18314773-18315245	A549	lung:	n/a	n/a
20	BHLHE40	chr17:18396537-18396565	K562	blood:	n/a	n/a
21	BHLHE40	chr17:18424672-18424862	GM12878	blood:	n/a	n/a
22	CEBPB	chr17:18362356-18362662	IMR90	lung:	n/a	chr17:18362363-18362376
23	CEBPB	chr17:18322055-18322251	K562	blood:	n/a	n/a
24	CEBPB	chr17:18322048-18322324	K562	blood:	n/a	n/a
25	CEBPB	chr17:18362210-18362602	Hela-S3	cervix:	n/a	chr17:18362363-18362376
26	CEBPB	chr17:18317946-18318165	IMR90	lung:	n/a	chr17:18318100-18318113 chr17:18318102-18318113 chr17:18318102-18318111
27	CEBPB	chr17:18318052-18318134	A549	lung:	n/a	chr17:18318100-18318113 chr17:18318102-18318113 chr17:18318102-18318111
28	CEBPB	chr17:18322037-18322380	K562	blood:	n/a	n/a
29	CHD1	chr17:18315013-18315207	H1-hESC	embryonic stem cell:	n/a	n/a
30	CHD2	chr17:18314139-18314423	H1-hESC	embryonic stem cell:	n/a	n/a
31	CTCF	chr17:18403240-18403390	GM12865	blood:	n/a	n/a
32	CTCF	chr17:18345402-18345892	A549	lung:	n/a	n/a
33	CTCF	chr17:18400504-18400672	GM10266	blood:	n/a	n/a
34	CTCF	chr17:18345528-18345758	Kidney_OC	kidney:	n/a	n/a
35	CTCF	chr17:18355400-18355550	SAEC	small airway:	n/a	chr17:18355490-18355499
36	CTCF	chr17:18380879-18380969	Pancreas_OC	pancreas:	n/a	n/a
37	CTCF	chr17:18403692-18404052	K562	blood:	n/a	n/a
38	CTCF	chr17:18345520-18345670	AG04450	lung:	n/a	n/a
39	CTCF	chr17:18391849-18391946	Lung_OC	lung:	n/a	n/a
40	CTCF	chr17:18400380-18400530	HRPEpiC	eye:	n/a	n/a
41	CTCF	chr17:18345551-18345743	GM13976	blood:	n/a	n/a
42	CTCF	chr17:18403736-18403897	K562	blood:	n/a	n/a
43	CTCF	chr17:18403662-18403990	K562	blood:	n/a	n/a
44	CTCF	chr17:18357299-18357378	Spleen_OC	spleen:	n/a	n/a
45	CTCF	chr17:18345500-18345650	AG09319	gingival:	n/a	n/a
46	CTCF	chr17:18292251-18292257	Spleen_OC	spleen:	n/a	n/a
47	CTCF	chr17:18345520-18345670	HVMF	connective:	n/a	n/a
48	CTCF	chr17:18345500-18345650	AG04450	lung:	n/a	n/a
49	CTCF	chr17:18428453-18428620	GM10248	blood:	n/a	chr17:18428545-18428561 chr17:18428546-18428567
50	CTCF	chr17:18400380-18400530	AG10803	skin:	n/a	n/a

(count:1527 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:18430908-18430958	PANC-1	pancreas:	n/a
2	chr17:18432149-18432199	NH-A	brain:	n/a
3	chr17:18430908-18430958	PANC-1	pancreas:	n/a
4	chr17:18432149-18432199	NH-A	brain:	n/a
5	chr17:18325001-18325051	GM19239	blood:	n/a
6	chr17:18313048-18313098	HCPEpiC	choroid plexus:	n/a
7	chr17:18432149-18432199	HCM	heart:	n/a
8	chr17:18379129-18379179	HAEpiC	amniotic membrane:	n/a
9	chr17:18431043-18431093	HepG2	liver:	n/a
10	chr17:18378879-18378929	PANC-1	pancreas:	n/a
11	chr17:18380354-18380404	Caco-2	colon:	n/a
12	chr17:18421335-18421385	Jurkat	blood:	n/a
13	chr17:18313121-18313171	HNPCEpiC	eye:	n/a
14	chr17:18326064-18326114	HUVEC	blood vessel:	n/a
15	chr17:18317909-18317959	RPTEC	kidney:	n/a
16	chr17:18326064-18326114	LNCaP	prostate:	n/a
17	chr17:18430908-18430958	Hela-S3	cervix:	n/a
18	chr17:18325001-18325051	HAEpiC	amniotic membrane:	n/a
19	chr17:18290668-18290718	PANC-1	pancreas:	n/a
20	chr17:18397849-18397899	ovcar-3	ovarian:	n/a
21	chr17:18325001-18325051	GM06990	blood:	n/a
22	chr17:18431043-18431093	HCF	heart:	n/a
23	chr17:18295503-18295553	GM12891	blood:	n/a
24	chr17:18295503-18295553	HEK293	kidney:	embryo
25	chr17:18380159-18380209	ovcar-3	ovarian:	n/a
26	chr17:18325001-18325051	T-47D	breast:	n/a
27	chr17:18430908-18430958	IMR90	lung:	fetal
28	chr17:18380354-18380404	BE2_C	brain:	n/a
29	chr17:18317909-18317959	IMR90	lung:	fetal
30	chr17:18325001-18325051	PANC-1	pancreas:	n/a
31	chr17:18397849-18397899	A549	lung:	n/a
32	chr17:18431043-18431093	AG09319	gingival:	n/a
33	chr17:18378879-18378929	NB4	blood:	n/a
34	chr17:18431043-18431093	GM06990	blood:	n/a
35	chr17:18429951-18430001	NH-A	brain:	n/a
36	chr17:18313121-18313171	AG04449	skin:	fetal
37	chr17:18290668-18290718	HNPCEpiC	eye:	n/a
38	chr17:18431043-18431093	Hepatocyte	liver:	n/a
39	chr17:18290668-18290718	HEEpiC	esophagus:	n/a
40	chr17:18317909-18317959	K562	blood:	n/a
41	chr17:18429951-18430001	HUVEC	blood vessel:	n/a
42	chr17:18302510-18302560	RPTEC	kidney:	n/a
43	chr17:18305305-18305355	HCM	heart:	n/a
44	chr17:18313121-18313171	PANC-1	pancreas:	n/a
45	chr17:18305305-18305355	HCT-116	colon:	n/a
46	chr17:18380159-18380209	HEK293	kidney:	embryo
47	chr17:18380159-18380209	SK-N-MC	brain:	n/a
48	chr17:18313121-18313171	K562	blood:	n/a
49	chr17:18421335-18421385	HPAEpiC	pulmonary alveolar:	n/a
50	chr17:18325001-18325051	HEK293	kidney:	embryo

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:18273227..18274953-chr17:18289917..18291736,2	K562	blood:
2	chr17:18289123..18291183-chr17:20462480..20465308,2	MCF-7	breast:

(count:84 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM106A-2	chr17:18427120-18427191	ENSG00000273018.1
2	lnc-FAM106A-2	chr17:18424393-18424459	ENSG00000273018.1
3	lnc-FAM106A-2	chr17:18444241-18444277	NONHSAT146384
4	lnc-FAM106A-2	chr17:18422796-18422988	ENSG00000273018.1
5	lnc-FAM106A-2	chr17:18431887-18432061	ENSG00000273018.1
6	lnc-FAM106A-2	chr17:18436661-18436852	ENSG00000273018.1
7	lnc-FAM106A-2	chr17:18422796-18422988	NONHSAT146382
8	lnc-FAM106A-2	chr17:18445402-18445501	ENSG00000273018.1
9	lnc-FAM106A-2	chr17:18435820-18435911	ENSG00000273018.1
10	lnc-AL353997.5.1-2	chr17:18317468-18317702	XLOC_012131
11	lnc-AL353997.5.1-2	chr17:18317464-18317623	XLOC_012131
12	lnc-FAM106A-2	chr17:18436661-18436946	ENSG00000273018.1
13	lnc-FAM106A-2	chr17:18430884-18431074	ENSG00000273018.1
14	lnc-AL353997.5.1-6	chr17:18395939-18396053	NONHSAT146378
15	lnc-FAM106A-2	chr17:18436395-18436705	NONHSAT146384
16	lnc-FAM106A-2	chr17:18422958-18422988	ENSG00000273018.1
17	lnc-FAM106A-2	chr17:18431887-18432061	ENSG00000273018.1
18	lnc-FAM106A-2	chr17:18430884-18431074	ENSG00000273018.1
19	lnc-FAM106A-2	chr17:18431887-18432298	ENSG00000273018.1
20	lnc-FAM106A-2	chr17:18431887-18431914	ENSG00000273018.1
21	lnc-FAM106A-2	chr17:18420633-18420787	NONHSAT146382
22	lnc-AL353997.5.1-6	chr17:18395483-18395859	NONHSAT146378
23	lnc-FAM106A-2	chr17:18422796-18422988	ENSG00000273018.1
24	lnc-FAM106A-2	chr17:18445402-18445501	ENSG00000273018.1
25	lnc-FAM106A-2	chr17:18422796-18422988	ENSG00000273018.1
26	lnc-AL353997.5.1-2	chr17:18315789-18316112	XLOC_012131
27	lnc-FAM106A-2	chr17:18435820-18436192	ENSG00000273018.1
28	lnc-FAM106A-2	chr17:18427091-18427191	ENSG00000273018.1
29	lnc-FAM106A-2	chr17:18422796-18422988	ENSG00000273018.1
30	lnc-FAM106A-2	chr17:18420696-18420787	ENSG00000273018.1
31	lnc-AL353997.5.1-1	chr17:18328108-18328411	ENSG00000205266.5
32	lnc-FAM106A-2	chr17:18422796-18422988	ENSG00000273018.1
33	lnc-FAM106A-2	chr17:18420604-18420787	NONHSAT146381
34	lnc-FAM106A-2	chr17:18431887-18432061	ENSG00000273018.1
35	lnc-FAM106A-2	chr17:18446183-18446301	ENSG00000273018.1
36	lnc-FAM106A-2	chr17:18427091-18427191	ENSG00000273018.1
37	lnc-FAM106A-2	chr17:18422796-18422988	NONHSAT146381
38	lnc-FAM106A-2	chr17:18422796-18422988	ENSG00000273018.1
39	lnc-FAM106A-2	chr17:18431887-18432126	NONHSAT146381
40	lnc-FAM106A-2	chr17:18431887-18432642	ENSG00000273018.1
41	lnc-FAM106A-2	chr17:18435820-18436348	ENSG00000273018.1
42	lnc-AL353997.5.1-1	chr17:18327635-18327951	ENSG00000205266.5
43	lnc-FAM106A-2	chr17:18427457-18427714	ENSG00000273018.1
44	lnc-FAM106A-2	chr17:18420725-18420787	ENSG00000273018.1
45	lnc-FAM106A-2	chr17:18435820-18435911	ENSG00000273018.1
46	lnc-AL353997.5.1-5	chr17:18380114-18380207	NONHSAT146376
47	lnc-FAM106A-2	chr17:18431887-18432061	ENSG00000273018.1
48	lnc-FAM106A-2	chr17:18420604-18420787	ENSG00000273018.1
49	lnc-FAM106A-1	chr17:18427880-18430160	NR_026809
50	lnc-AL353997.1-1	chr17:18291533-18291602	NONHSAT146194

No data

Variant related genes	Relation type
ENSG00000205266	TF binding region
USP32P2	TF binding region
KRT16P4	TF binding region
LGALS9C	TF binding region
ENSG00000227919	TF binding region
ENSG00000267492	TF binding region
KRT16P1	TF binding region
ENSG00000267441	TF binding region
TNPO1P2	TF binding region
ENSG00000240279	TF binding region
YWHAEP2	TF binding region
EVPLL	TF binding region
FAM106A	TF binding region
KRT17P2	TF binding region
SRP68P2	TF binding region
ENSG00000220161	TF binding region
NOS2P2	TF binding region
TBC1D3P4	TF binding region
ENSG00000264177	TF binding region
ENSG00000273018	TF binding region
ENSG00000205266	CpG island
USP32P2	CpG island
KRT16P4	CpG island
LGALS9C	CpG island
ENSG00000227919	CpG island
ENSG00000267492	CpG island
KRT16P1	CpG island
ENSG00000267441	CpG island
TNPO1P2	CpG island
ENSG00000240279	CpG island
YWHAEP2	CpG island
EVPLL	CpG island
FAM106A	CpG island
KRT17P2	CpG island
SRP68P2	CpG island
ENSG00000220161	CpG island
NOS2P2	CpG island
TBC1D3P4	CpG island
ENSG00000264177	CpG island
ENSG00000273018	CpG island
ENSG00000263946	chromatin interactions
KIAA0528	miRNA target sites
KIAA0664	miRNA target sites

Extended variants
information (count: 3265 )
Associated
traits (count: 169 )

Variant overlapped rSNPs/rCNVs (count:3265 , 50 per page) page: 1 2 3 4 5 6 7 ... 66

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs151086884	chr17:18289396-18289397	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs11870681	chr17:18289461-18289462	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs373644655	chr17:18289497-18289498	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs144875887	chr17:18289498-18289499	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs571287937	chr17:18289500-18289501	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs540001322	chr17:18289581-18289582	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs546833573	chr17:18289583-18289584	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs566811559	chr17:18289599-18289600	Enhancers Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs545290110	chr17:18289613-18289614	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs147041835	chr17:18289615-18289616	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs555293161	chr17:18289648-18289649	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs569251446	chr17:18289700-18289701	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs148033503	chr17:18289734-18289735	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
14	rs200274082	chr17:18289744-18289745	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
15	rs11295053	chr17:18289747-18289748	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
16	rs180977837	chr17:18289761-18289762	Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	Overlapped CNVs	n/a
17	rs578073255	chr17:18289817-18289818	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs540413986	chr17:18289834-18289835	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
19	rs554019902	chr17:18289851-18289852	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
20	rs573936705	chr17:18289883-18289884	Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
21	rs542966155	chr17:18289919-18289920	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs7222009	chr17:18289923-18289924	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
23	rs141503181	chr17:18289935-18289936	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs34778621	chr17:18289948-18289949	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs7222951	chr17:18289949-18289950	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
26	rs7221741	chr17:18289956-18289957	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
27	rs546747520	chr17:18290034-18290035	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs185801515	chr17:18290056-18290057	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs372308533	chr17:18290076-18290077	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs36099889	chr17:18290088-18290089	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs371923431	chr17:18290094-18290095	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs549252697	chr17:18290101-18290102	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs7222335	chr17:18290115-18290116	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs538237843	chr17:18290118-18290119	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs557909284	chr17:18290149-18290150	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs540321905	chr17:18290209-18290210	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs60131387	chr17:18290225-18290226	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs571674929	chr17:18290265-18290266	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs57006411	chr17:18290278-18290279	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
40	rs553983000	chr17:18290293-18290294	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs7222239	chr17:18290295-18290296	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
42	rs192313259	chr17:18290318-18290319	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs111785911	chr17:18290351-18290352	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs113417707	chr17:18290358-18290359	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs35980776	chr17:18290386-18290387	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs138322486	chr17:18290407-18290408	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs542876210	chr17:18290411-18290412	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs36040105	chr17:18290412-18290413	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	mRNA abundance
49	rs35379927	chr17:18290435-18290436	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs58952800	chr17:18290442-18290443	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:169)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Esophageal adenocarcinoma	18519675	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Chordoma	21602918	CNVD
Miller-Dieker syndrome	22283845	CNVD
Non-syndromic sensorineural hearing loss	17457615	CNVD
Cancer	22429812	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Ewing''s sarcoma	21437220	CNVD
Follicular lymphoma	19010834	CNVD
Colorectal cancer	20709793	CNVD
Acute myeloid leukemia	16864856	CNVD
Endometrial cancer	22040021	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Breast cancer	22028636	CNVD
Breast cancer	20837533	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
colon cancer	17210682	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Basal cell lymphoma	17053054	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Cancer	16751803	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Chronic lymphocytic leukemia	17971485	CNVD
Basal cell lymphoma	17170743	CNVD
Breast cancer	16461572	CNVD
Colorectal cancer	16272173	CNVD
Follicular lymphoma	17170743	CNVD
Human rectal carcinomas	16397240	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Ovarian cancer	22174824	CNVD
Moyamoya disease	22323933	CNVD
small cell lung cancer	20016488	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	21251322	CNVD
Myelodysplastic syndrome	21251322	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20724749	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Acute myeloid leukemia	17237825	CNVD
Colorectal cancer	21645411	CNVD
HIV/AIDS	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
HIV/AIDS	17953491	CNVD
HIV/AIDS	20877625	CNVD
Immune disease	21076436	CNVD
Rheumatoid arthritis	17953491	CNVD
Type 1 diabetes	17953491	CNVD
HIV/AIDS	15637236	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Ovarian cancer	21781307	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Neurofibromatosis	18196300	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Colorectal cancer	16774939	CNVD
Breast cancer	17001317	CNVD
Rhabdomyosarcoma	16790082	CNVD
Charcot-marie-tooth disease	16463004	CNVD
Osteosarcoma	22292074	CNVD
Breast cancer	17603634	CNVD
Charcot	16760730	CNVD
Mental retardation	17901693	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
ovarian endometriomas	16273235	CNVD
Ovarian cancer	21720365	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Smith-Magenis syndrome	18923513	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16272173	CNVD
Austim spectrum disorder	21302340	CNVD
Autism	22492990	CNVD
Congenital abnormalities	21549014	CNVD
Developmental delay	18414209	CNVD
Developmental delay	21549014	CNVD
Epilepsy	20970697	CNVD
Mental retardation	18414209	CNVD
Mental retardation	21549014	CNVD
Smith-Magenis syndrome	21981782	CNVD
Smith-Magenis syndrome	20188345	CNVD
Smith-Magenis syndrome	16775514	CNVD
Smith-Magenis syndrome	22585170	CNVD
Smith-Magenis syndrome	22241247	CNVD
Autism	20970697	CNVD
Mental retardation	19951919	CNVD
Potocki-Lupski syndrome	21271655	CNVD
Potocki-lupski syndrome	17357070	CNVD
Potocki-lupski syndrome	20110824	CNVD
Potocki-lupski syndrome	18923514	CNVD
Potocki-lupski syndrome	22241247	CNVD
Potocki-lupski syndrome	20188345	CNVD
Schizophrenia	21399695	CNVD
Mental retardation	16773131	CNVD
Adenocarcinoma	19607727	CNVD
Squamous cell cancer	19607727	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Charcot-marie-tooth disease	22470819	CNVD
Neurofibromatosis	22470819	CNVD
Neuropathy	22470819	CNVD
Smith-Magenis syndrome	18301319	CNVD
Smith-Magenis syndrome	17357070	CNVD
Smith-Magenis syndrome	18469339	CNVD
Smith-Magenis syndrome	22241097	CNVD
Smith-Magenis syndrome	22470819	CNVD
Tourette syndrome	18923514	CNVD
Type 1 diabetes	22470819	CNVD
Potocki-lupski syndrome	18469339	CNVD
Follicular lymphoma	20505157	CNVD
T-cell lymphomas	19863542	CNVD
Neuropathy	17597781	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	17015230	CNVD
Smith-Magenis syndrome	17597781	CNVD
Potocki-lupski syndrome	18059269	CNVD
Potocki-lupski syndrome	17597781	CNVD
Mental retardation	17847001	CNVD
Multiple myeloma	16616336	CNVD
Breast cancer	20409316	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Autism	22543975	CNVD
Ovarian cancer	22355333	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Sezary syndrome	18413736	CNVD
Medulloblastoma	16783165	CNVD
Recurrent pregnancy loss	19789632	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Tetralogy of Fallot	22912587	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Autism	21865298	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	19212409	CNVD

Chromatin state (count:596 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:18283800-18289400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr17:18287800-18290000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr17:18289400-18289600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr17:18290800-18291400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr17:18291600-18292200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr17:18291600-18292200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr17:18291600-18292200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr17:18291600-18292600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr17:18291800-18292000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
10	chr17:18291800-18292200	Enhancers	Primary B cells from peripheral blood	blood
11	chr17:18291800-18292200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr17:18291800-18293600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr17:18292200-18292600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr17:18292200-18294400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr17:18292600-18293200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr17:18292600-18293400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr17:18293000-18293400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr17:18293400-18293600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr17:18293400-18293600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr17:18293400-18293600	Enhancers	Fetal Muscle Trunk	muscle
21	chr17:18294400-18294600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr17:18306600-18306800	Enhancers	GM12878-XiMat	blood
23	chr17:18306800-18314200	Weak transcription	GM12878-XiMat	blood
24	chr17:18307600-18308000	Enhancers	Primary B cells from peripheral blood	blood
25	chr17:18308000-18312400	Weak transcription	Primary B cells from peripheral blood	blood
26	chr17:18311600-18312800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr17:18312000-18312200	Enhancers	Fetal Thymus	thymus
28	chr17:18312200-18312400	Enhancers	Primary hematopoietic stem cells	blood
29	chr17:18312200-18312400	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr17:18312200-18312400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr17:18312200-18312400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr17:18312200-18312400	Enhancers	Brain Cingulate Gyrus	brain
33	chr17:18312200-18312600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr17:18312200-18312600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr17:18312200-18312600	Active TSS	Fetal Brain Female	brain
36	chr17:18312200-18312600	Flanking Active TSS	Fetal Thymus	thymus
37	chr17:18312200-18312800	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr17:18312200-18312800	Enhancers	Fetal Lung	lung
39	chr17:18312200-18313000	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr17:18312200-18313000	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr17:18312200-18313000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr17:18312200-18313000	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr17:18312200-18313200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr17:18312200-18313200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr17:18312200-18313200	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr17:18312200-18313200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr17:18312200-18313200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr17:18312200-18313200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr17:18312200-18313400	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr17:18312200-18313600	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links