Variant report

Variant	nsv1057120
Chromosome Location	chr20:14837251-15166775
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2466)
CpG islands
(count:61)
Chromatin interactive
region (count:36)
LncRNA
region (count:22)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2466 , 50 per page) page: 1 2 3 4 5 6 7 ... 50

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr20:15042539-15043096	HepG2	liver:	n/a	n/a
2	ARID3A	chr20:15144336-15144711	HepG2	liver:	n/a	n/a
3	ARID3A	chr20:14965101-14967567	HepG2	liver:	n/a	n/a
4	ARID3A	chr20:15139111-15139485	HepG2	liver:	n/a	n/a
5	ARID3A	chr20:14986003-14986310	HepG2	liver:	n/a	n/a
6	ARID3A	chr20:14936639-14937073	HepG2	liver:	n/a	n/a
7	ARID3A	chr20:14959886-14961038	HepG2	liver:	n/a	n/a
8	ARID3A	chr20:14859363-14860384	HepG2	liver:	n/a	n/a
9	ARID3A	chr20:15041045-15042049	HepG2	liver:	n/a	n/a
10	ARID3A	chr20:14971646-14973208	HepG2	liver:	n/a	n/a
11	ATF2	chr20:15142556-15143423	GM12878	blood:	n/a	n/a
12	ATF2	chr20:15142645-15143351	GM12878	blood:	n/a	n/a
13	ATF2	chr20:14841032-14841474	H1-hESC	embryonic stem cell:	n/a	n/a
14	ATF2	chr20:14841040-14841554	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF2	chr20:14883084-14883368	GM12878	blood:	n/a	n/a
16	ATF3	chr20:14966508-14967301	A549	lung:	n/a	n/a
17	ATF3	chr20:14966529-14967363	A549	lung:	n/a	n/a
18	ATF3	chr20:14965454-14966225	A549	lung:	n/a	n/a
19	ATF3	chr20:14859595-14860443	A549	lung:	n/a	n/a
20	ATF3	chr20:14859536-14860398	A549	lung:	n/a	n/a
21	BACH1	chr20:14952997-14953174	H1-hESC	embryonic stem cell:	n/a	n/a
22	BACH1	chr20:15144468-15144534	H1-hESC	embryonic stem cell:	n/a	n/a
23	BACH1	chr20:14841074-14841466	H1-hESC	embryonic stem cell:	n/a	n/a
24	BATF	chr20:14860056-14860418	GM12878	blood:	n/a	chr20:14860263-14860273 chr20:14860262-14860273 chr20:14860267-14860277
25	BATF	chr20:15142669-15143382	GM12878	blood:	n/a	n/a
26	BATF	chr20:15040971-15041310	GM12878	blood:	n/a	n/a
27	BATF	chr20:15143005-15143338	GM12878	blood:	n/a	n/a
28	BATF	chr20:15041087-15041347	GM12878	blood:	n/a	n/a
29	BATF	chr20:15142631-15143004	GM12878	blood:	n/a	n/a
30	BATF	chr20:14883072-14883470	GM12878	blood:	n/a	n/a
31	BATF	chr20:14860106-14860399	GM12878	blood:	n/a	chr20:14860263-14860273 chr20:14860262-14860273 chr20:14860267-14860277
32	BATF	chr20:14883118-14883412	GM12878	blood:	n/a	n/a
33	BATF	chr20:14931782-14932075	GM12878	blood:	n/a	n/a
34	BCL11A	chr20:14883096-14883392	GM12878	blood:	n/a	chr20:14883229-14883238
35	BCL11A	chr20:14859536-14859807	GM12878	blood:	n/a	n/a
36	BCL11A	chr20:14841111-14841474	H1-hESC	embryonic stem cell:	n/a	n/a
37	BCL11A	chr20:14883093-14883400	GM12878	blood:	n/a	chr20:14883229-14883238
38	BCL3	chr20:14966427-14967324	A549	lung:	n/a	n/a
39	BCL3	chr20:14859331-14860569	A549	lung:	n/a	chr20:14860151-14860160 chr20:14859419-14859428 chr20:14860265-14860274
40	BCL3	chr20:14965529-14966338	A549	lung:	n/a	chr20:14966177-14966184
41	BCL3	chr20:14966411-14967352	A549	lung:	n/a	n/a
42	BCL3	chr20:14859514-14860394	A549	lung:	n/a	chr20:14860151-14860160 chr20:14860265-14860274
43	BCLAF1	chr20:15142637-15143439	GM12878	blood:	n/a	n/a
44	BHLHE40	chr20:14960125-14960599	HepG2	liver:	n/a	n/a
45	BHLHE40	chr20:14965455-14966238	HepG2	liver:	n/a	n/a
46	BHLHE40	chr20:14860191-14860193	HepG2	liver:	n/a	n/a
47	BHLHE40	chr20:15041038-15041678	HepG2	liver:	n/a	n/a
48	BHLHE40	chr20:14977538-14977786	HepG2	liver:	n/a	n/a
49	BHLHE40	chr20:15042548-15042950	HepG2	liver:	n/a	n/a
50	BRCA1	chr20:15041931-15042029	HepG2	liver:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr20:14904432-14904482	HIPEpiC	eye:	n/a
2	chr20:14904432-14904482	HRPEpiC	eye:	n/a
3	chr20:14904432-14904482	RPTEC	kidney:	n/a
4	chr20:14904432-14904482	HPAEpiC	pulmonary alveolar:	n/a
5	chr20:14904432-14904482	MCF-7	breast:	n/a
6	chr20:14904432-14904482	PFSK-1	brain:	n/a
7	chr20:14904432-14904482	AG09319	gingival:	n/a
8	chr20:14904432-14904482	HRE	kidney:	n/a
9	chr20:14904432-14904482	NHBE	bronchial:	n/a
10	chr20:14904432-14904482	SK-N-SH	brain:	n/a
11	chr20:14904432-14904482	CMK	blood:	n/a
12	chr20:14904432-14904482	GM12892	blood:	n/a
13	chr20:14904432-14904482	AG10803	skin:	n/a
14	chr20:14904432-14904482	MCF10A-Er-Src	breast:	n/a
15	chr20:14904432-14904482	ECC-1	luminal epithelium:	n/a
16	chr20:14904432-14904482	GM12878	blood:	n/a
17	chr20:14904432-14904482	ovcar-3	ovarian:	n/a
18	chr20:14904432-14904482	Jurkat	blood:	n/a
19	chr20:14904432-14904482	HepG2	liver:	n/a
20	chr20:14904432-14904482	HL-60	blood:	n/a
21	chr20:14904432-14904482	NT2-D1	testis:	n/a
22	chr20:14904432-14904482	PANC-1	pancreas:	n/a
23	chr20:14904432-14904482	U87	brain:	n/a
24	chr20:14904432-14904482	AG09309	skin:	n/a
25	chr20:14904432-14904482	GM19239	blood:	n/a
26	chr20:14904432-14904482	PrEC	prostate:	n/a
27	chr20:14904432-14904482	AG04449	skin:	fetal
28	chr20:14904432-14904482	HCF	heart:	n/a
29	chr20:14904432-14904482	HCT-116	colon:	n/a
30	chr20:14904432-14904482	SK-N-MC	brain:	n/a
31	chr20:14904432-14904482	Hela-S3	cervix:	n/a
32	chr20:14904432-14904482	HCM	heart:	n/a
33	chr20:14904432-14904482	HUVEC	blood vessel:	n/a
34	chr20:14904432-14904482	HEEpiC	esophagus:	n/a
35	chr20:14904432-14904482	HEK293	kidney:	embryo
36	chr20:14904432-14904482	IMR90	lung:	fetal
37	chr20:14904432-14904482	GM12891	blood:	n/a
38	chr20:14904432-14904482	GM06990	blood:	n/a
39	chr20:14904432-14904482	NHDF-neo	bronchial:	n/a
40	chr20:14904432-14904482	AoSMC	blood vessel:	n/a
41	chr20:14904432-14904482	NH-A	brain:	n/a
42	chr20:14904432-14904482	HMEC	breast:	n/a
43	chr20:14904432-14904482	T-47D	breast:	n/a
44	chr20:14904432-14904482	HNPCEpiC	eye:	n/a
45	chr20:14904432-14904482	Hepatocyte	liver:	n/a
46	chr20:14904432-14904482	SAEC	small airway:	n/a
47	chr20:14904432-14904482	SKMC	muscle:	n/a
48	chr20:14904432-14904482	HCPEpiC	choroid plexus:	n/a
49	chr20:14904432-14904482	Caco-2	colon:	n/a
50	chr20:14904432-14904482	HRCEpiC	kidney:	n/a

(count:36 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:14857662..14859546-chr20:15214980..15217486,2	MCF-7	breast:
2	chr20:14901786..14904742-chr20:14908050..14909865,2	MCF-7	breast:
3	chr20:14892181..14894488-chr20:14900218..14901785,2	MCF-7	breast:
4	chr20:14867933..14870632-chr20:14873919..14875816,2	MCF-7	breast:
5	chr20:14845184..14847390-chr20:14926741..14929314,2	MCF-7	breast:
6	chr20:14925222..14927929-chr20:14930721..14932848,2	MCF-7	breast:
7	chr20:14905161..14907169-chr20:14915982..14918854,2	MCF-7	breast:
8	chr20:14859239..14863091-chr20:15040405..15044044,4	MCF-7	breast:
9	chr20:14856302..14859235-chr20:14930877..14933226,2	MCF-7	breast:
10	chr20:14862084..14865220-chr20:14867174..14871364,3	MCF-7	breast:
11	chr20:14050662..14052329-chr20:14946506..14948938,2	MCF-7	breast:
12	chr20:14838738..14840500-chr20:14846618..14848612,2	MCF-7	breast:
13	chr20:14983136..14983867-chr7:139874694..139875444,2	MCF-7	breast:
14	chr20:14845184..14847390-chr20:14926741..14929314,2	MCF-7	breast:
15	chr20:14925222..14927929-chr20:14930721..14932848,2	MCF-7	breast:
16	chr20:14913183..14915031-chr20:14915260..14917096,2	MCF-7	breast:
17	chr20:14898344..14901833-chr20:14901900..14905742,3	MCF-7	breast:
18	chr20:14895407..14897578-chr20:14900614..14902594,2	MCF-7	breast:
19	chr20:14867933..14870632-chr20:14873919..14875816,2	MCF-7	breast:
20	chr20:14861831..14864729-chr20:14900336..14902240,2	MCF-7	breast:
21	chr20:14861831..14864729-chr20:14900336..14902240,2	MCF-7	breast:
22	chr20:14835355..14837300-chr20:14840386..14842306,2	MCF-7	breast:
23	chr20:14898344..14901833-chr20:14901900..14905742,3	MCF-7	breast:
24	chr20:14862084..14865220-chr20:14867174..14871364,3	MCF-7	breast:
25	chr20:14838738..14840500-chr20:14846618..14848612,2	MCF-7	breast:
26	chr20:14314384..14315320-chr20:14929469..14930347,2	MCF-7	breast:
27	chr20:14892181..14894488-chr20:14900218..14901785,2	MCF-7	breast:
28	chr20:14593902..14596386-chr20:15052997..15054796,2	K562	blood:
29	chr20:14825814..14826804-chr20:14859521..14860363,2	MCF-7	breast:
30	chr20:14859239..14863091-chr20:15040405..15044044,4	MCF-7	breast:
31	chr20:14837652..14840600-chr20:14844675..14847639,2	MCF-7	breast:
32	chr20:14837652..14840600-chr20:14844675..14847639,2	MCF-7	breast:
33	chr20:14856302..14859235-chr20:14930877..14933226,2	MCF-7	breast:
34	chr20:14901786..14904742-chr20:14908050..14909865,2	MCF-7	breast:
35	chr20:14835355..14837300-chr20:14840386..14842306,2	MCF-7	breast:
36	chr20:14895407..14897578-chr20:14900614..14902594,2	MCF-7	breast:

(count:22 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FLRT3-1	chr20:14910021-14910161	ENSG00000235914.1
2	lnc-FLRT3-1	chr20:14885587-14886675	ENSG00000235914.1
3	lnc-FLRT3-1	chr20:14864899-14865240	NR_037841
4	lnc-FLRT3-1	chr20:14885587-14886675	NR_072988
5	lnc-FLRT3-1	chr20:14864899-14865240	ENSG00000235914.1
6	lnc-FLRT3-1	chr20:14868742-14868950	NR_037841
7	lnc-FLRT3-2	chr20:14915884-14916009	ENSG00000237832.1
8	lnc-FLRT3-2	chr20:14915576-14915720	ENSG00000237832.1
9	lnc-FLRT3-1	chr20:14910021-14910164	NR_072988
10	lnc-FLRT3-2	chr20:14914489-14914588	ENSG00000237832.1
11	lnc-FLRT3-1	chr20:14868742-14868950	ENSG00000235914.1
12	lnc-FLRT3-1	chr20:14910021-14910164	NR_110318
13	lnc-FLRT3-1	chr20:14910021-14910154	NONHSAT078722
14	lnc-FLRT3-1	chr20:14910021-14910132	ENSG00000235914.1
15	lnc-FLRT3-1	chr20:14868742-14868950	NONHSAT078721
16	lnc-FLRT3-1	chr20:14864898-14865240	NONHSAT078722
17	lnc-FLRT3-1	chr20:14910021-14910142	NONHSAT078721
18	lnc-FLRT3-1	chr20:14864899-14865240	NR_110318
19	lnc-FLRT3-4	chr20:14858021-14858161	ucscGeneNc_uc002woy_1
20	lnc-FLRT3-1	chr20:14910021-14910164	NR_037841
21	lnc-FLRT3-1	chr20:14864896-14865240	NONHSAT078721
22	lnc-C20orf7-3	chr20:14868789-14869314	NONHSAT078714

No data

Variant related genes	Relation type
ENSG00000237832	TF binding region
RNU6-1159P	TF binding region
RNU6-115P	TF binding region
MACROD2-AS1	TF binding region
ENSG00000237832	CpG island
RNU6-1159P	CpG island
RNU6-115P	CpG island
MACROD2-AS1	CpG island
ENSG00000237832	chromatin interactions

Extended variants
information (count: 10514 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:10514 , 50 per page) page: 1 2 3 4 5 6 7 ... 211

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs543949612	chr20:14837279-14837280	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs6074806	chr20:14837328-14837329	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs573196038	chr20:14837351-14837352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs540598514	chr20:14837371-14837372	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs114717426	chr20:14837399-14837400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs577245639	chr20:14837405-14837406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs544731860	chr20:14837464-14837465	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs6074807	chr20:14837465-14837466	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs530265426	chr20:14837495-14837496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs78180643	chr20:14837548-14837549	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs149284573	chr20:14837623-14837624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs369436903	chr20:14837628-14837629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs528011665	chr20:14837651-14837652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs560465701	chr20:14837666-14837667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs546166337	chr20:14837740-14837741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs532409830	chr20:14837754-14837755	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs149490603	chr20:14837779-14837780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs538347618	chr20:14837790-14837791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs550611059	chr20:14837803-14837804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs568863514	chr20:14837811-14837812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs367923772	chr20:14837836-14837837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs536424587	chr20:14837895-14837896	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs554823145	chr20:14837923-14837924	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs566760556	chr20:14837959-14837960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs365516	chr20:14837965-14837966	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs562518277	chr20:14837989-14837990	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs558990541	chr20:14837998-14837999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs577126486	chr20:14838006-14838007	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs544281368	chr20:14838087-14838088	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs556590716	chr20:14838162-14838163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs58434631	chr20:14838187-14838188	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs531064156	chr20:14838192-14838193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs534868798	chr20:14838211-14838212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs57317527	chr20:14838221-14838222	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs181162020	chr20:14838275-14838276	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs570810997	chr20:14838297-14838298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs184524367	chr20:14838329-14838330	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs546127148	chr20:14838380-14838381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs564635559	chr20:14838382-14838383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs554367728	chr20:14838392-14838393	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs13045209	chr20:14838431-14838432	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs374540599	chr20:14838456-14838457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs373869914	chr20:14838457-14838458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs71190157	chr20:14838483-14838484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs143948365	chr20:14838502-14838503	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs568899541	chr20:14838536-14838537	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs200272193	chr20:14838560-14838561	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs188987441	chr20:14838592-14838593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs148570456	chr20:14838623-14838624	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs7260827	chr20:14838627-14838628	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Breast cancer	16397240	CNVD
abortions and stillbirths	19751515	CNVD
Wilms tumour	21544195	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	16272173	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Glaucoma	21310917	CNVD
Alagille syndrome	22470819	CNVD
Lung cancer	16773561	CNVD
Renal cell carcinoma	18765545	CNVD
Alagille syndrome	17576883	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
Prostate cancer	18632612	CNVD
Ewing''s sarcoma	18628472	CNVD
Glioblastoma multiforme	18628472	CNVD
Leukemia	18628472	CNVD
Myelofibrosis	22110671	CNVD
Kabuki syndrome	21720541	CNVD
Glioblastoma multiforme	22286061	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Neurocytoma	17123091	CNVD
Glioblastoma multiforme	21138945	CNVD
Cancer	20164919	CNVD
Multiple sclerosis	20663923	CNVD
Schizophrenia	20663923	CNVD
brain infarct	20663923	CNVD
Breast cancer	22522925	CNVD
Breast cancer	17142309	CNVD
Cancer	20164920	CNVD
Schizophrenia	23813976	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Autism	20531469	CNVD
Breast cancer	21364760	CNVD
Williams Syndrome	20824207	CNVD
Melanoma	17363583	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Schizophrenia	20967226	CNVD
Cancer	21272361	CNVD
Schizophrenia	19805367	CNVD

Chromatin state (count:1479 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:14825800-14845600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:14838600-14839000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr20:14838600-14839200	Enhancers	NHEK	skin
4	chr20:14839000-14841000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr20:14839600-14842600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr20:14839800-14840400	Enhancers	Brain Germinal Matrix	brain
7	chr20:14840000-14842400	Enhancers	GM12878-XiMat	blood
8	chr20:14840400-14840600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
9	chr20:14840400-14840800	Weak transcription	Brain Germinal Matrix	brain
10	chr20:14840400-14841000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr20:14840400-14841200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr20:14840400-14841800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr20:14840400-14842200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
14	chr20:14840400-14842400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr20:14840400-14842400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr20:14840600-14840800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr20:14840600-14840800	Enhancers	A549	lung
18	chr20:14840600-14841200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr20:14840600-14842400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr20:14840600-14842600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr20:14840800-14841000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr20:14840800-14841400	Enhancers	Brain Germinal Matrix	brain
23	chr20:14840800-14842000	Flanking Active TSS	A549	lung
24	chr20:14840800-14842600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr20:14841000-14841400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr20:14841000-14841400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr20:14841000-14841400	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr20:14841000-14841400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr20:14841000-14841400	Enhancers	Colon Smooth Muscle	Colon
30	chr20:14841000-14841400	Enhancers	Fetal Thymus	thymus
31	chr20:14841000-14841800	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr20:14841200-14841600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr20:14841200-14841600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr20:14841200-14842000	Enhancers	HepG2	liver
35	chr20:14841200-14842600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr20:14841400-14841800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr20:14841400-14842200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr20:14841400-14842200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr20:14841400-14845600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr20:14841600-14842000	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr20:14841600-14842200	Enhancers	H1 Cell Line	embryonic stem cell
42	chr20:14841600-14842600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr20:14841800-14842400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
44	chr20:14841800-14842400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
45	chr20:14841800-14842600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr20:14841800-14843400	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr20:14842000-14842400	Enhancers	A549	lung
48	chr20:14842000-14846600	Weak transcription	HepG2	liver
49	chr20:14842200-14842400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr20:14842200-14842400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links