Variant report

Variant	nsv1057240
Chromosome Location	chr19:56919831-57153659
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1296)
CpG islands
(count:4582)
Chromatin interactive
region (count:23)
LncRNA
region (count:70)
Mature miRNA
region (count: 0)
miRNA target
sites (count:2)

(count:1296 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:57087159-57087355	K562	blood:	n/a	n/a
2	ATF3	chr19:56988997-56989631	H1-hESC	embryonic stem cell:	n/a	n/a
3	BACH1	chr19:56988129-56989735	H1-hESC	embryonic stem cell:	n/a	n/a
4	BACH1	chr19:57078904-57079138	H1-hESC	embryonic stem cell:	n/a	n/a
5	BACH1	chr19:57050354-57050813	H1-hESC	embryonic stem cell:	n/a	n/a
6	BACH1	chr19:57018807-57019161	H1-hESC	embryonic stem cell:	n/a	n/a
7	BACH1	chr19:57002772-57003159	H1-hESC	embryonic stem cell:	n/a	n/a
8	BATF	chr19:57006008-57006182	GM12878	blood:	n/a	n/a
9	BATF	chr19:57005926-57006227	GM12878	blood:	n/a	n/a
10	BCL11A	chr19:57005946-57006300	GM12878	blood:	n/a	n/a
11	BHLHE40	chr19:56989421-56989451	K562	blood:	n/a	n/a
12	BHLHE40	chr19:57149378-57149666	K562	blood:	n/a	n/a
13	BHLHE40	chr19:57050358-57050446	GM12878	blood:	n/a	n/a
14	BHLHE40	chr19:57078739-57079081	GM12878	blood:	n/a	n/a
15	BHLHE40	chr19:57149399-57149677	GM12878	blood:	n/a	n/a
16	BRCA1	chr19:57018909-57019098	H1-hESC	embryonic stem cell:	n/a	n/a
17	BRCA1	chr19:57009690-57009818	H1-hESC	embryonic stem cell:	n/a	n/a
18	BRCA1	chr19:57050604-57050791	H1-hESC	embryonic stem cell:	n/a	n/a
19	BRCA1	chr19:57106394-57107029	Hela-S3	cervix:	n/a	n/a
20	BRCA1	chr19:57106326-57106395	HepG2	liver:	n/a	n/a
21	CBX3	chr19:56934943-56935689	K562	blood:	n/a	n/a
22	CBX3	chr19:57149369-57149656	K562	blood:	n/a	n/a
23	CBX3	chr19:56934598-56934867	K562	blood:	n/a	n/a
24	CBX3	chr19:57149393-57149628	K562	blood:	n/a	n/a
25	CEBPB	chr19:56967674-56967892	A549	lung:	n/a	chr19:56967822-56967833
26	CEBPB	chr19:56935273-56935539	A549	lung:	n/a	chr19:56935376-56935387
27	CEBPB	chr19:56989289-56990099	IMR90	lung:	n/a	chr19:56989652-56989661 chr19:56989652-56989661 chr19:56989652-56989661
28	CEBPB	chr19:57034280-57034480	HepG2	liver:	n/a	chr19:57034405-57034416
29	CEBPB	chr19:56967750-56967840	HepG2	liver:	n/a	chr19:56967822-56967833
30	CEBPB	chr19:57126859-57127081	A549	lung:	n/a	n/a
31	CEBPB	chr19:56989481-56989788	A549	lung:	n/a	chr19:56989652-56989661 chr19:56989652-56989661 chr19:56989652-56989661
32	CEBPB	chr19:57091770-57091950	IMR90	lung:	n/a	n/a
33	CEBPB	chr19:56989368-56989798	H1-hESC	embryonic stem cell:	n/a	chr19:56989652-56989661 chr19:56989652-56989661 chr19:56989652-56989661
34	CEBPB	chr19:57002828-57003033	IMR90	lung:	n/a	chr19:57002892-57002904
35	CEBPB	chr19:57018866-57019252	IMR90	lung:	n/a	n/a
36	CEBPB	chr19:56954673-56954866	A549	lung:	n/a	chr19:56954765-56954776
37	CEBPB	chr19:57055126-57055622	A549	lung:	n/a	chr19:57055337-57055348
38	CEBPB	chr19:57126941-57127088	HepG2	liver:	n/a	n/a
39	CEBPB	chr19:57019023-57019246	H1-hESC	embryonic stem cell:	n/a	n/a
40	CEBPB	chr19:56954724-56954779	H1-hESC	embryonic stem cell:	n/a	chr19:56954765-56954776
41	CEBPB	chr19:57055143-57055580	A549	lung:	n/a	chr19:57055337-57055348
42	CEBPB	chr19:57106396-57106647	Hela-S3	cervix:	n/a	n/a
43	CEBPB	chr19:57126918-57127189	IMR90	lung:	n/a	n/a
44	CEBPB	chr19:57055211-57055572	MCF-7	breast:	n/a	chr19:57055337-57055348
45	CEBPB	chr19:57055191-57055492	K562	blood:	n/a	chr19:57055337-57055348
46	CEBPB	chr19:56935297-56935563	K562	blood:	n/a	chr19:56935376-56935387
47	CEBPB	chr19:57055163-57055521	HepG2	liver:	n/a	chr19:57055337-57055348
48	CEBPB	chr19:57095163-57095329	A549	lung:	n/a	n/a
49	CEBPB	chr19:57055209-57055487	H1-hESC	embryonic stem cell:	n/a	chr19:57055337-57055348
50	CEBPB	chr19:56980070-56980184	HepG2	liver:	n/a	chr19:56980115-56980126

(count:4582 , 50 per page) page: 1 2 3 4 5 6 7 ... 92

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:57129782-57129832	NB4	blood:	n/a
2	chr19:56988935-56988985	AG09319	gingival:	n/a
3	chr19:57109049-57109099	SAEC	small airway:	n/a
4	chr19:57134027-57134077	PrEC	prostate:	n/a
5	chr19:57019022-57019072	A549	lung:	n/a
6	chr19:57050620-57050670	NB4	blood:	n/a
7	chr19:57149436-57149486	HEK293	kidney:	embryo
8	chr19:57129782-57129832	NB4	blood:	n/a
9	chr19:56988935-56988985	AG09319	gingival:	n/a
10	chr19:57109049-57109099	SAEC	small airway:	n/a
11	chr19:57134027-57134077	PrEC	prostate:	n/a
12	chr19:57019022-57019072	A549	lung:	n/a
13	chr19:57050620-57050670	NB4	blood:	n/a
14	chr19:57149436-57149486	HEK293	kidney:	embryo
15	chr19:57078521-57078571	HUVEC	blood vessel:	n/a
16	chr19:57091383-57091433	H1-hESC	embryonic stem cell:	embryo
17	chr19:57050834-57050884	HRE	kidney:	n/a
18	chr19:57078727-57078777	ovcar-3	ovarian:	n/a
19	chr19:57019016-57019066	SK-N-MC	brain:	n/a
20	chr19:57091383-57091433	NHBE	bronchial:	n/a
21	chr19:57078765-57078815	ProgFib	skin:	n/a
22	chr19:56988702-56988752	HUVEC	blood vessel:	n/a
23	chr19:57019373-57019423	MCF10A-Er-Src	breast:	n/a
24	chr19:57049695-57049745	U87	brain:	n/a
25	chr19:57050370-57050420	AoSMC	blood vessel:	n/a
26	chr19:57152752-57152802	HNPCEpiC	eye:	n/a
27	chr19:57147547-57147597	A549	lung:	n/a
28	chr19:57046713-57046763	HEEpiC	esophagus:	n/a
29	chr19:57019958-57020008	U87	brain:	n/a
30	chr19:57078442-57078492	HPAEpiC	pulmonary alveolar:	n/a
31	chr19:57079300-57079350	HepG2	liver:	n/a
32	chr19:57129782-57129832	HRCEpiC	kidney:	n/a
33	chr19:56988778-56988828	SK-N-SH	brain:	n/a
34	chr19:56988929-56988979	H1-hESC	embryonic stem cell:	embryo
35	chr19:57078173-57078223	BE2_C	brain:	n/a
36	chr19:57019958-57020008	HNPCEpiC	eye:	n/a
37	chr19:57078780-57078830	Hepatocyte	liver:	n/a
38	chr19:57067420-57067470	HRCEpiC	kidney:	n/a
39	chr19:57106714-57106764	K562	blood:	n/a
40	chr19:57106538-57106588	NH-A	brain:	n/a
41	chr19:57078173-57078223	HEK293	kidney:	embryo
42	chr19:57078783-57078833	PFSK-1	brain:	n/a
43	chr19:57050834-57050884	HCPEpiC	choroid plexus:	n/a
44	chr19:56988929-56988979	PFSK-1	brain:	n/a
45	chr19:56988929-56988979	AoSMC	blood vessel:	n/a
46	chr19:57050834-57050884	IMR90	lung:	fetal
47	chr19:57079146-57079196	MCF10A-Er-Src	breast:	n/a
48	chr19:57149630-57149680	SAEC	small airway:	n/a
49	chr19:57019016-57019066	NB4	blood:	n/a
50	chr19:57078173-57078223	HepG2	liver:	n/a

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:57130300..57133010-chr19:57135444..57137071,2	K562	blood:
2	chr19:56922748..56925351-chr19:56930754..56933374,2	K562	blood:
3	chr19:56914950..56917627-chr19:56917967..56921707,4	K562	blood:
4	chr19:57002795..57005630-chr19:57006374..57008169,2	MCF-7	breast:
5	chr19:56915589..56918201-chr19:56921743..56925459,4	K562	blood:
6	chr19:56922748..56925351-chr19:56930754..56933374,2	K562	blood:
7	chr19:56936048..56937864-chr19:56941808..56944058,2	K562	blood:
8	chr19:56936048..56938748-chr19:56941808..56944257,2	K562	blood:
9	chr19:56653240..56655225-chr19:56994034..56995574,2	K562	blood:
10	chr19:57106673..57107322-chr21:27106852..27107481,2	Hela-S3	cervix:
11	chr19:57130300..57133010-chr19:57135444..57137071,2	K562	blood:
12	chr19:56978548..56980333-chr19:56983464..56985765,2	K562	blood:
13	chr19:56936048..56938748-chr19:56941808..56944257,2	K562	blood:
14	chr19:56921777..56924252-chr19:56925183..56927455,2	K562	blood:
15	chr19:56936048..56937864-chr19:56941808..56944058,2	K562	blood:
16	chr19:56921777..56924252-chr19:56925183..56927455,2	K562	blood:
17	chr19:56912448..56916998-chr19:56918724..56922155,5	K562	blood:
18	chr19:56913953..56915717-chr19:56929673..56932216,2	K562	blood:
19	chr19:57019659..57020659-chr6:103890104..103890604,2	MCF-7	breast:
20	chr19:56907962..56910475-chr19:56925379..56927319,2	K562	blood:
21	chr19:56928898..56932035-chr19:56933505..56936936,3	K562	blood:
22	chr19:57002795..57005630-chr19:57006374..57008169,2	MCF-7	breast:
23	chr11:65658617..65659346-chr19:57117182..57118018,2	MCF-7	breast:

(count:70 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC004696.1-1	chr19:56989552-56989645	ENSG00000166770.6
2	lnc-ZNF471-1	chr19:57055905-57056106	NONHSAT068172
3	lnc-AC004696.1-1	chr19:57006416-57006801	ENSG00000166770.6
4	lnc-ZNF667-3	chr19:57049020-57049106	ENSG00000267421.2
5	lnc-AC004696.1-1	chr19:57005532-57005711	ENSG00000166770.6
6	lnc-AC004696.1-1	chr19:57005532-57005711	ENSG00000166770.6
7	lnc-ZNF667-2	chr19:57056935-57058640	ENSG00000269696.1
8	lnc-ZNF71-4	chr19:57144227-57144300	ucscGeneNc_uc002pyb_1
9	lnc-ZNF667-2	chr19:57056935-57058640	ENSG00000245443
10	lnc-ZNF667-3	chr19:57049020-57049106	ENSG00000267421.2
11	lnc-ZNF470-1	chr19:57080127-57080252	NONHSAT068176
12	lnc-ZNF667-2	chr19:57078442-57078780	ENSG00000269696.1
13	lnc-AC004696.1-1	chr19:57005532-57006805	NONHSAT068157
14	lnc-ZNF667-3	chr19:57047525-57047701	ENSG00000267421.2
15	lnc-ZNF667-2	chr19:57078442-57078774	ENSG00000245443
16	lnc-AC004696.1-1	chr19:56989243-56989750	NONHSAT068156
17	lnc-ZNF470-3	chr19:57106703-57106796	NONHSAT068178
18	lnc-ZNF667-3	chr19:57049622-57049744	ENSG00000267421.2
19	lnc-ZNF835-3	chr19:57100863-57101091	NONHSAT068177
20	lnc-ZNF667-2	chr19:57056297-57058640	NONHSAT068173
21	lnc-ZFP28-2	chr19:57037069-57037390	NONHSAT068165
22	lnc-ZFP28-2	chr19:57021466-57021682	NONHSAT068165
23	lnc-ZNF835-3	chr19:57101328-57101649	NONHSAT068177
24	lnc-AC004696.1-1	chr19:57002946-57003135	ENSG00000166770.6
25	lnc-AC004696.1-1	chr19:56989552-56989750	ENSG00000166770.6
26	lnc-AC004696.1-1	chr19:57006417-57006804	ENSG00000166770.6
27	lnc-ZNF470-3	chr19:57121333-57121911	NONHSAT068178
28	lnc-ZNF667-3	chr19:57047527-57047701	ENSG00000267421.2
29	lnc-ZNF667-2	chr19:57078442-57078833	NONHSAT068173
30	lnc-AC004696.1-1	chr19:57005532-57006805	NONHSAT068156
31	lnc-AC004696.1-1	chr19:56989524-56989750	ENSG00000166770.6
32	lnc-ZNF470-2	chr19:57061815-57062398	NONHSAT068174
33	lnc-AC004696.1-1	chr19:57005532-57005696	ENSG00000166770.6
34	lnc-ZNF470-1	chr19:57099594-57099774	NONHSAT068176
35	lnc-ZNF582-2	chr19:56979088-56980304	ENSG00000250660
36	lnc-AC004696.1-1	chr19:57005532-57005972	ENSG00000166770.6
37	lnc-ZNF667-3	chr19:57049020-57049106	ENSG00000267421.2
38	lnc-AC004696.1-1	chr19:56989493-56989645	NONHSAT068157
39	lnc-AC004696.1-1	chr19:56989559-56989746	ENSG00000166770.6
40	lnc-ZNF667-3	chr19:57049794-57049944	ENSG00000267421.2
41	lnc-ZNF470-1	chr19:57086007-57086102	NONHSAT068176
42	lnc-AC004696.1-1	chr19:56988619-56990056	ENSG00000166770.6
43	lnc-ZNF667-3	chr19:57047527-57047701	ENSG00000267421.2
44	lnc-ZNF667-3	chr19:57049020-57049106	ENSG00000267421.2
45	lnc-AC004696.1-1	chr19:56989609-56989662	ENSG00000166770.6
46	lnc-AC004696.1-1	chr19:56989552-56989645	ENSG00000166770.6
47	lnc-ZNF667-3	chr19:57047527-57047701	ENSG00000267421.2
48	lnc-AC004696.1-1	chr19:57002946-57003135	ENSG00000166770.6
49	lnc-ZNF470-1	chr19:57095388-57095480	NONHSAT068176
50	lnc-ZNF582-2	chr19:56985381-56987270	ENSG00000250660

No data

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	ZNF71	hsa-miR-193b-3p	chr19:57134816-57134837
2	ZFP28	hsa-miR-335-5p	chr19:57063009-57063035

Variant related genes	Relation type
ENSG00000267421	TF binding region
ENSG00000267224	TF binding region
ENSG00000268036	TF binding region
ZFP28	TF binding region
ZNF470	TF binding region
ZNF667	TF binding region
ZNF471	TF binding region
ZNF583	TF binding region
ZNF667-AS1	TF binding region
ZNF71	TF binding region
ENSG00000269696	TF binding region
SIGLEC31P	TF binding region
SMIM17	TF binding region
ENSG00000267421	CpG island
ENSG00000267224	CpG island
ENSG00000268036	CpG island
ZFP28	CpG island
ZNF470	CpG island
ZNF667	CpG island
ZNF471	CpG island
ZNF583	CpG island
ZNF667-AS1	CpG island
ZNF71	CpG island
ENSG00000269696	CpG island
SIGLEC31P	CpG island
SMIM17	CpG island
ENSG00000198046	chromatin interactions
ENSG00000167685	chromatin interactions
ENSG00000198440	chromatin interactions
ENSG00000154727	chromatin interactions
ENSG00000154723	chromatin interactions
IKBIP	miRNA target sites
PIR	miRNA target sites
BRCA1	miRNA target sites
EIF4E	miRNA target sites
TMEM194A	miRNA target sites
TKT	miRNA target sites
TNRC6A	miRNA target sites

Extended variants
information (count: 8705 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:8705 , 50 per page) page: 1 2 3 4 5 6 7 ... 175

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs181690632	chr19:56919834-56919835	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs561007740	chr19:56919836-56919837	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs559533531	chr19:56919908-56919909	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs73934903	chr19:56919909-56919910	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs546572816	chr19:56919921-56919922	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs13343842	chr19:56919994-56919995	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs554814860	chr19:56920059-56920060	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs528536889	chr19:56920105-56920106	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs538934812	chr19:56920163-56920164	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs114503547	chr19:56920182-56920183	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs186872637	chr19:56920224-56920225	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs148371405	chr19:56920239-56920240	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs554637944	chr19:56920269-56920270	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs190512773	chr19:56920318-56920319	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs115984535	chr19:56920321-56920322	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs577294957	chr19:56920324-56920325	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs182238985	chr19:56920344-56920345	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs9789281	chr19:56920348-56920349	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
19	rs141601460	chr19:56920356-56920357	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs537272171	chr19:56920374-56920375	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs575338910	chr19:56920381-56920382	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs371604114	chr19:56920382-56920383	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs550792029	chr19:56920466-56920467	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs561067368	chr19:56920479-56920480	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs73934904	chr19:56920482-56920483	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs186041292	chr19:56920511-56920512	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs150875579	chr19:56920514-56920515	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs559870978	chr19:56920519-56920520	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs189659268	chr19:56920626-56920627	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs552584799	chr19:56920695-56920696	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs113561504	chr19:56920718-56920719	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs114240611	chr19:56920753-56920754	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs559251872	chr19:56920820-56920821	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs548331543	chr19:56920821-56920822	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs138484132	chr19:56920901-56920902	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs534004084	chr19:56920910-56920911	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs554272225	chr19:56920941-56920942	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs567605211	chr19:56921072-56921073	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs182706208	chr19:56921121-56921122	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs539865651	chr19:56921155-56921156	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs536589420	chr19:56921156-56921157	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs534680691	chr19:56921163-56921164	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs554964488	chr19:56921177-56921178	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs138309593	chr19:56921229-56921230	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs574775179	chr19:56921284-56921285	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs537531325	chr19:56921291-56921292	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs558571225	chr19:56921333-56921334	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs557082735	chr19:56921337-56921338	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs73621285	chr19:56921355-56921356	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs368609467	chr19:56921357-56921358	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Breast cancer	21785460	CNVD
Myelofibrosis	22110671	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Alzheimer''s disease	22166940	CNVD
Heart disease	21282601	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Glioblastoma multiforme	21922591	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Breast cancer	20409316	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:6130 , 50 per page) page: 1 2 3 4 5 6 7 ... 123

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56915800-56924200	ZNF genes & repeats	Fetal Brain Male	brain
2	chr19:56915800-56927000	ZNF genes & repeats	HSMM	muscle
3	chr19:56916000-56938600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr19:56916200-56920200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr19:56916400-56920400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
6	chr19:56916400-56926200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr19:56916400-56927000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr19:56916400-56929800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
9	chr19:56916400-56936600	ZNF genes & repeats	Brain Germinal Matrix	brain
10	chr19:56916400-56956000	ZNF genes & repeats	Liver	Liver
11	chr19:56916600-56920000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr19:56916600-56920200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr19:56916600-56935600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr19:56916600-56956000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
15	chr19:56916800-56920000	Weak transcription	Pancreas	Pancrea
16	chr19:56916800-56921800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr19:56916800-56936200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr19:56916800-56936200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr19:56917000-56920400	Strong transcription	Brain Angular Gyrus	brain
20	chr19:56917000-56926000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr19:56917000-56927200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr19:56917000-56931000	ZNF genes & repeats	Fetal Muscle Leg	muscle
23	chr19:56917000-56931200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr19:56917000-56937000	ZNF genes & repeats	Fetal Lung	lung
25	chr19:56917000-56938800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr19:56917000-56940000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
27	chr19:56917200-56929800	ZNF genes & repeats	Primary B cells from cord blood	blood
28	chr19:56917200-56935800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr19:56917200-56936600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
30	chr19:56917200-56936600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
31	chr19:56917200-56937600	ZNF genes & repeats	Fetal Brain Female	brain
32	chr19:56917400-56924400	Weak transcription	K562	blood
33	chr19:56917400-56944800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr19:56917600-56923200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr19:56917600-56939400	ZNF genes & repeats	Primary T cells from cord blood	blood
36	chr19:56917800-56922800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
37	chr19:56918000-56924800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
38	chr19:56918000-56925000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr19:56918200-56920000	Strong transcription	Thymus	Thymus
40	chr19:56918200-56920600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
41	chr19:56918200-56920600	ZNF genes & repeats	HSMMtube	muscle
42	chr19:56918200-56920800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
43	chr19:56918200-56921000	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
44	chr19:56918200-56921000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
45	chr19:56918200-56921000	ZNF genes & repeats	Left Ventricle	heart
46	chr19:56918200-56921600	ZNF genes & repeats	Stomach Smooth Muscle	stomach
47	chr19:56918200-56926800	ZNF genes & repeats	Dnd41	blood
48	chr19:56918200-56927200	ZNF genes & repeats	Psoas Muscle	Psoas
49	chr19:56918200-56929800	ZNF genes & repeats	Ovary	ovary
50	chr19:56918200-56930200	Strong transcription	Placenta Amnion	Placenta Amnion

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