Variant report

Variant	nsv1058026
Chromosome Location	chr19:56799847-56833153
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1106)
CpG islands
(count:611)
Chromatin interactive
region (count:67)
LncRNA
region (count:30)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1106 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:56825504-56826158	K562	blood:	n/a	n/a
2	ARID3A	chr19:56825542-56826504	HepG2	liver:	n/a	n/a
3	ARID3A	chr19:56813327-56813373	K562	blood:	n/a	n/a
4	ARID3A	chr19:56828061-56828366	HepG2	liver:	n/a	n/a
5	ARID3A	chr19:56821009-56821236	K562	blood:	n/a	n/a
6	ARID3A	chr19:56833099-56833664	K562	blood:	n/a	n/a
7	ATF1	chr19:56832654-56833000	K562	blood:	n/a	n/a
8	ATF1	chr19:56825521-56827047	K562	blood:	n/a	n/a
9	ATF2	chr19:56825748-56826342	GM12878	blood:	n/a	chr19:56826007-56826018
10	ATF2	chr19:56825630-56826289	GM12878	blood:	n/a	chr19:56826007-56826018
11	ATF2	chr19:56825811-56826274	H1-hESC	embryonic stem cell:	n/a	chr19:56826007-56826018
12	ATF3	chr19:56820968-56821259	K562	blood:	n/a	n/a
13	ATF3	chr19:56826230-56826848	H1-hESC	embryonic stem cell:	n/a	chr19:56826244-56826253
14	ATF3	chr19:56826150-56826782	GM12878	blood:	n/a	chr19:56826244-56826253
15	ATF3	chr19:56825824-56826810	K562	blood:	n/a	chr19:56826006-56826019 chr19:56826009-56826019 chr19:56826005-56826018 chr19:56826006-56826016 chr19:56826008-56826016 chr19:56825997-56826017 chr19:56826009-56826020 chr19:56826009-56826017 chr19:56826009-56826016 chr19:56826008-56826028 chr19:56826244-56826253 chr19:56826006-56826017 chr19:56826009-56826019 chr19:56826006-56826019 chr19:56826005-56826020 chr19:56826007-56826020 chr19:56826008-56826019 chr19:56826007-56826018
16	ATF3	chr19:56820863-56821361	H1-hESC	embryonic stem cell:	n/a	n/a
17	ATF3	chr19:56825783-56826224	K562	blood:	n/a	chr19:56826006-56826019 chr19:56826009-56826019 chr19:56826005-56826018 chr19:56826006-56826016 chr19:56826008-56826016 chr19:56825997-56826017 chr19:56826009-56826020 chr19:56826009-56826017 chr19:56826009-56826016 chr19:56826008-56826028 chr19:56826006-56826017 chr19:56826009-56826019 chr19:56826006-56826019 chr19:56826005-56826020 chr19:56826007-56826020 chr19:56826008-56826019 chr19:56826007-56826018
18	BACH1	chr19:56825552-56826050	H1-hESC	embryonic stem cell:	n/a	n/a
19	BACH1	chr19:56821179-56821200	K562	blood:	n/a	n/a
20	BACH1	chr19:56826649-56827054	H1-hESC	embryonic stem cell:	n/a	n/a
21	BCL3	chr19:56825577-56826649	A549	lung:	n/a	chr19:56826245-56826254 chr19:56826232-56826241
22	BCLAF1	chr19:56820940-56821234	GM12878	blood:	n/a	n/a
23	BCLAF1	chr19:56825629-56826647	GM12878	blood:	n/a	chr19:56826245-56826254 chr19:56826232-56826241
24	BHLHE40	chr19:56825517-56827059	K562	blood:	n/a	n/a
25	BHLHE40	chr19:56832648-56832955	K562	blood:	n/a	n/a
26	BHLHE40	chr19:56825494-56827098	GM12878	blood:	n/a	n/a
27	BHLHE40	chr19:56820975-56821324	K562	blood:	n/a	n/a
28	BRCA1	chr19:56825308-56827124	Hela-S3	cervix:	n/a	n/a
29	BRCA1	chr19:56826628-56827040	HepG2	liver:	n/a	n/a
30	BRCA1	chr19:56825741-56826163	GM12878	blood:	n/a	n/a
31	BRCA1	chr19:56825942-56826211	HepG2	liver:	n/a	n/a
32	CBX3	chr19:56813200-56813543	K562	blood:	n/a	n/a
33	CBX3	chr19:56825345-56826474	K562	blood:	n/a	n/a
34	CBX3	chr19:56824486-56824901	K562	blood:	n/a	n/a
35	CBX3	chr19:56820962-56821337	K562	blood:	n/a	n/a
36	CCNT2	chr19:56832659-56832976	K562	blood:	n/a	n/a
37	CCNT2	chr19:56825788-56826236	K562	blood:	n/a	chr19:56826158-56826167
38	CEBPB	chr19:56832676-56833019	K562	blood:	n/a	n/a
39	CEBPB	chr19:56825088-56826269	K562	blood:	n/a	n/a
40	CEBPB	chr19:56832628-56832999	K562	blood:	n/a	n/a
41	CEBPB	chr19:56825881-56826665	GM12878	blood:	n/a	n/a
42	CEBPB	chr19:56825312-56826709	HepG2	liver:	n/a	n/a
43	CEBPB	chr19:56825375-56825643	HepG2	liver:	n/a	n/a
44	CEBPB	chr19:56825294-56826957	Hela-S3	cervix:	n/a	n/a
45	CEBPB	chr19:56820643-56821157	K562	blood:	n/a	n/a
46	CEBPB	chr19:56799963-56800165	IMR90	lung:	n/a	n/a
47	CEBPB	chr19:56825261-56825686	HepG2	liver:	n/a	n/a
48	CEBPB	chr19:56826517-56827089	K562	blood:	n/a	n/a
49	CEBPB	chr19:56828135-56828423	HepG2	liver:	n/a	n/a
50	CEBPB	chr19:56826476-56826795	A549	lung:	n/a	n/a

(count:611 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:56828822-56828872	HAEpiC	amniotic membrane:	n/a
2	chr19:56828822-56828872	HAEpiC	amniotic membrane:	n/a
3	chr19:56826761-56826811	HRE	kidney:	n/a
4	chr19:56826256-56826306	ProgFib	skin:	n/a
5	chr19:56826779-56826829	HRPEpiC	eye:	n/a
6	chr19:56826779-56826829	HCF	heart:	n/a
7	chr19:56826826-56826876	AoSMC	blood vessel:	n/a
8	chr19:56826761-56826811	HCPEpiC	choroid plexus:	n/a
9	chr19:56821774-56821824	HCF	heart:	n/a
10	chr19:56826256-56826306	SKMC	muscle:	n/a
11	chr19:56826186-56826236	NHDF-neo	bronchial:	n/a
12	chr19:56828822-56828872	GM06990	blood:	n/a
13	chr19:56826256-56826306	HEK293	kidney:	embryo
14	chr19:56825644-56825694	Caco-2	colon:	n/a
15	chr19:56826442-56826492	NT2-D1	testis:	n/a
16	chr19:56826044-56826094	NH-A	brain:	n/a
17	chr19:56826442-56826492	HL-60	blood:	n/a
18	chr19:56826826-56826876	HAEpiC	amniotic membrane:	n/a
19	chr19:56826186-56826236	HL-60	blood:	n/a
20	chr19:56826761-56826811	SK-N-SH_RA	brain:	n/a
21	chr19:56826826-56826876	AG10803	skin:	n/a
22	chr19:56826761-56826811	T-47D	breast:	n/a
23	chr19:56821774-56821824	T-47D	breast:	n/a
24	chr19:56826761-56826811	NH-A	brain:	n/a
25	chr19:56826826-56826876	GM12891	blood:	n/a
26	chr19:56821774-56821824	IMR90	lung:	fetal
27	chr19:56826761-56826811	GM06990	blood:	n/a
28	chr19:56821774-56821824	PrEC	prostate:	n/a
29	chr19:56826826-56826876	HRCEpiC	kidney:	n/a
30	chr19:56821774-56821824	NT2-D1	testis:	n/a
31	chr19:56826761-56826811	HEK293	kidney:	embryo
32	chr19:56826442-56826492	HPAEpiC	pulmonary alveolar:	n/a
33	chr19:56826256-56826306	GM06990	blood:	n/a
34	chr19:56826186-56826236	HCM	heart:	n/a
35	chr19:56826826-56826876	ovcar-3	ovarian:	n/a
36	chr19:56828822-56828872	A549	lung:	n/a
37	chr19:56821774-56821824	AoSMC	blood vessel:	n/a
38	chr19:56826044-56826094	AG04450	lung:	fetal
39	chr19:56828822-56828872	PrEC	prostate:	n/a
40	chr19:56826256-56826306	HCT-116	colon:	n/a
41	chr19:56826442-56826492	NHDF-neo	bronchial:	n/a
42	chr19:56826779-56826829	PrEC	prostate:	n/a
43	chr19:56826442-56826492	A549	lung:	n/a
44	chr19:56826779-56826829	AG04450	lung:	fetal
45	chr19:56826826-56826876	NHDF-neo	bronchial:	n/a
46	chr19:56826256-56826306	AG04450	lung:	fetal
47	chr19:56826779-56826829	GM19239	blood:	n/a
48	chr19:56826186-56826236	GM19239	blood:	n/a
49	chr19:56821774-56821824	Caco-2	colon:	n/a
50	chr19:56825644-56825694	HCT-116	colon:	n/a

(count:67 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr19:56631391..56633030-chr19:56824712..56827583,2	K562	blood:
2	chr19:56814282..56817166-chr19:56824782..56826304,2	MCF-7	breast:
3	chr19:56815074..56816909-chr19:56819293..56822091,2	K562	blood:
4	chr19:56798402..56800517-chr19:56824554..56827552,3	K562	blood:
5	chr19:56629872..56632038-chr19:56819906..56821500,2	MCF-7	breast:
6	chr19:56826282..56828501-chr19:56879622..56881209,2	K562	blood:
7	chr19:56815074..56816909-chr19:56819293..56822091,2	K562	blood:
8	chr19:56631633..56633507-chr19:56820271..56822769,2	MCF-7	breast:
9	chr19:56806540..56808650-chr19:56825989..56828485,3	MCF-7	breast:
10	chr19:56814154..56816778-chr19:56824607..56827217,3	K562	blood:
11	chr19:56587513..56588027-chr19:56820710..56821536,2	MCF-7	breast:
12	chr19:56577530..56578455-chr19:56820635..56821533,4	MCF-7	breast:
13	chr19:56815831..56819069-chr19:56823653..56827558,7	K562	blood:
14	chr19:56800949..56803657-chr19:56804852..56806650,2	K562	blood:
15	chr19:56806540..56808650-chr19:56825989..56828485,3	MCF-7	breast:
16	chr19:56777096..56779331-chr19:56819751..56822246,2	MCF-7	breast:
17	chr19:56631659..56633594-chr19:56825559..56827609,3	MCF-7	breast:
18	chr19:56165194..56167874-chr19:56829304..56831856,2	K562	blood:
19	chr11:118560524..118561488-chr19:56820849..56821521,2	MCF-7	breast:
20	chr19:56825335..56828118-chr19:56903219..56906332,4	K562	blood:
21	chr19:56650916..56653050-chr19:56823772..56825517,2	K562	blood:
22	chr19:56821792..56823459-chr19:56860076..56862047,2	K562	blood:
23	chr19:56811881..56813231-chr19:56820624..56821581,3	K562	blood:
24	chr19:56797989..56800517-chr19:56824554..56828282,3	K562	blood:
25	chr19:56631390..56634909-chr19:56825062..56827444,3	MCF-7	breast:
26	chr19:56825808..56826423-chr21:47401255..47401974,2	HCT-116	colon:
27	chr19:56821112..56821613-chr19:56861782..56862434,2	K562	blood:
28	chr19:56760039..56762057-chr19:56831322..56833020,2	K562	blood:
29	chr19:56782876..56785649-chr19:56814131..56816489,2	K562	blood:
30	chr19:56651555..56653145-chr19:56824729..56827557,2	MCF-7	breast:
31	chr19:56587780..56588309-chr19:56820859..56821642,2	MCF-7	breast:
32	chr19:56612599..56616950-chr19:56825214..56827593,3	MCF-7	breast:
33	chr19:56819466..56823348-chr19:56824038..56827318,8	MCF-7	breast:
34	chr19:56820844..56821652-chr19:56844543..56845280,2	MCF-7	breast:
35	chr19:56815305..56818152-chr19:56824405..56826138,2	MCF-7	breast:
36	chr19:56807700..56809407-chr19:56813421..56815521,2	K562	blood:
37	chr19:56825234..56827754-chr19:56833575..56835953,2	MCF-7	breast:
38	chr19:56764814..56765752-chr19:56820274..56821276,4	K562	blood:
39	chr19:56825352..56829856-chr19:56831358..56835885,6	K562	blood:
40	chr19:56165049..56166864-chr19:56826052..56827910,2	K562	blood:
41	chr19:56820673..56821653-chr19:56844611..56845545,7	MCF-7	breast:
42	chr19:56766124..56767037-chr19:56820605..56821442,2	MCF-7	breast:
43	chr19:56817144..56823532-chr19:56823653..56827077,7	K562	blood:
44	chr19:56793005..56795545-chr19:56798620..56800184,2	K562	blood:
45	chr19:56731454..56732253-chr19:56820726..56821606,2	MCF-7	breast:
46	chr19:56825352..56829856-chr19:56831358..56835885,6	K562	blood:
47	chr19:56764396..56765751-chr19:56820601..56821654,11	MCF-7	breast:
48	chr19:56824639..56829612-chr19:56829732..56835885,11	K562	blood:
49	chr19:42363829..42364535-chr19:56826662..56827436,2	Hela-S3	cervix:
50	chr19:56588380..56589352-chr19:56820676..56821212,2	MCF-7	breast:

(count:30 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZSCAN5C-1	chr19:56812184-56813464	NONHSAT068093
2	lnc-ZSCAN5C-1	chr19:56806436-56806522	NONHSAT068093
3	lnc-ZNF582-5	chr19:56824652-56824753	NONHSAT068090
4	lnc-ZNF583-5	chr19:56826072-56826355	ENSG00000267549.1
5	lnc-ZSCAN5C-1	chr19:56802559-56802734	NONHSAT068093
6	lnc-ZSCAN5C-1	chr19:56816143-56816199	NONHSAT068093
7	lnc-ZNF583-5	chr19:56827190-56827397	NONHSAT068100
8	lnc-ZNF582-5	chr19:56825989-56826202	NONHSAT068090
9	lnc-ZNF582-5	chr19:56824652-56824749	NONHSAT068092
10	lnc-ZNF582-5	chr19:56824652-56824753	NONHSAT068091
11	lnc-ZNF583-5	chr19:56826623-56828172	ENSG00000267549.1
12	lnc-ZNF583-5	chr19:56826968-56827011	ENSG00000267549.1
13	lnc-ZNF582-4	chr19:56823297-56823855	ENSG00000267298.1
14	lnc-ZSCAN5C-1	chr19:56821493-56821930	NONHSAT068093
15	lnc-ZSCAN5C-1	chr19:56802840-56803281	NONHSAT068093
16	lnc-ZSCAN5C-1	chr19:56807197-56807336	NONHSAT068095
17	lnc-ZNF582-5	chr19:56824652-56824753	NONHSAT068096
18	lnc-ZNF582-5	chr19:56826050-56826162	NONHSAT068091
19	lnc-ZNF582-5	chr19:56807437-56807764	NONHSAT068096
20	lnc-ZSCAN5C-1	chr19:56807705-56807784	NONHSAT068095
21	lnc-ZNF583-5	chr19:56826495-56826874	NONHSAT068100
22	lnc-ZSCAN5C-1	chr19:56807143-56807336	NONHSAT068093
23	lnc-ZNF582-5	chr19:56826050-56826208	NONHSAT068096
24	lnc-ZSCAN5C-1	chr19:56807705-56807843	NONHSAT068093
25	lnc-ZNF582-5	chr19:56824652-56824756	NONHSAT068087
26	lnc-ZNF582-5	chr19:56824652-56824753	NONHSAT068089
27	lnc-ZNF583-5	chr19:56825619-56826355	NONHSAT068099
28	lnc-ZSCAN5C-1	chr19:56808874-56809238	NONHSAT068095
29	lnc-ZNF582-5	chr19:56826050-56826228	NONHSAT068089
30	lnc-ZSCAN5C-1	chr19:56808778-56809445	NONHSAT068093

No data

Variant related genes	Relation type
ENSG00000267549	TF binding region
ENSG00000267710	TF binding region
ENSG00000200646	TF binding region
VN2R17P	TF binding region
ENSG00000267298	TF binding region
ZSCAN5A	TF binding region
ENSG00000267549	CpG island
ENSG00000267710	CpG island
ENSG00000200646	CpG island
VN2R17P	CpG island
ENSG00000267298	CpG island
ZSCAN5A	CpG island
ENSG00000223060	chromatin interactions
ENSG00000267454	chromatin interactions
ENSG00000255239	chromatin interactions
ENSG00000213015	chromatin interactions
ENSG00000267298	chromatin interactions
ENSG00000155256	chromatin interactions
ENSG00000142409	chromatin interactions
ENSG00000267429	chromatin interactions
ENSG00000200646	chromatin interactions
ENSG00000267522	chromatin interactions
ENSG00000018869	chromatin interactions
ENSG00000173581	chromatin interactions
ENSG00000213014	chromatin interactions
ENSG00000267549	chromatin interactions
ENSG00000171425	chromatin interactions
ENSG00000267710	chromatin interactions
ENSG00000198440	chromatin interactions
ENSG00000111843	chromatin interactions
ENSG00000266907	chromatin interactions
ENSG00000142156	chromatin interactions
ENSG00000167685	chromatin interactions
ENSG00000063244	chromatin interactions
ENSG00000105372	chromatin interactions
ENSG00000131848	chromatin interactions
ENSG00000240225	chromatin interactions

Extended variants
information (count: 1335 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:1335 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567965075	chr19:56799852-56799853	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
2	rs180711046	chr19:56799853-56799854	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
3	rs553644027	chr19:56799860-56799861	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
4	rs566849647	chr19:56799889-56799890	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
5	rs78862842	chr19:56799890-56799891	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
6	rs185057632	chr19:56799930-56799931	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
7	rs558666693	chr19:56799962-56799963	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
8	rs113026586	chr19:56799990-56799991	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
9	rs111732802	chr19:56800050-56800051	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
10	rs188694089	chr19:56800062-56800063	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
11	rs12978406	chr19:56800134-56800135	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs556788716	chr19:56800135-56800136	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
13	rs140669028	chr19:56800168-56800169	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
14	rs17273365	chr19:56800202-56800203	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs559542996	chr19:56800220-56800221	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs548055827	chr19:56800242-56800243	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs528153036	chr19:56800257-56800258	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs545121592	chr19:56800277-56800278	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs564843797	chr19:56800311-56800312	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs530472462	chr19:56800315-56800316	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs561044660	chr19:56800316-56800317	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs145665691	chr19:56800338-56800339	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs561556773	chr19:56800358-56800359	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs12978758	chr19:56800425-56800426	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs373725192	chr19:56800458-56800459	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs548439672	chr19:56800498-56800499	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs61082580	chr19:56800502-56800503	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs376852538	chr19:56800503-56800504	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs567090469	chr19:56800508-56800509	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs538877512	chr19:56800569-56800570	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs138339719	chr19:56800576-56800577	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs376694072	chr19:56800605-56800606	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs566871115	chr19:56800618-56800619	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs539039604	chr19:56800655-56800656	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs572664742	chr19:56800742-56800743	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs141820645	chr19:56800757-56800758	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs554582384	chr19:56800768-56800769	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs150188414	chr19:56800774-56800775	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs536168857	chr19:56800797-56800798	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs138754369	chr19:56800830-56800831	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs572957790	chr19:56800835-56800836	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs544895733	chr19:56800837-56800838	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs564954781	chr19:56800845-56800846	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs181135316	chr19:56800931-56800932	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs544224620	chr19:56800943-56800944	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs560895689	chr19:56800982-56800983	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs530404386	chr19:56801085-56801086	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs149534864	chr19:56801089-56801090	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs147221839	chr19:56801129-56801130	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs532694509	chr19:56801139-56801140	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Breast cancer	21785460	CNVD
Myelofibrosis	22110671	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Alzheimer''s disease	22166940	CNVD
Heart disease	21282601	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Glioblastoma multiforme	21922591	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Breast cancer	20409316	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Non-syndromic sensorineural hearing loss	19812545	CNVD
Autism	21865298	CNVD

Chromatin state (count:1410 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56729200-56803000	Weak transcription	Pancreas	Pancrea
2	chr19:56753000-56809000	Weak transcription	Gastric	stomach
3	chr19:56764600-56804000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr19:56766600-56804200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr19:56770400-56804400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr19:56771400-56817200	Weak transcription	Fetal Brain Male	brain
7	chr19:56771600-56807000	Weak transcription	Right Ventricle	heart
8	chr19:56772800-56807600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr19:56772800-56824200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr19:56773000-56807400	Weak transcription	Esophagus	oesophagus
11	chr19:56775800-56815600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr19:56779600-56820200	Weak transcription	Hela-S3	cervix
13	chr19:56779800-56800000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr19:56779800-56807200	Weak transcription	Left Ventricle	heart
15	chr19:56781400-56804600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr19:56782800-56825200	Weak transcription	Psoas Muscle	Psoas
17	chr19:56783000-56825000	Weak transcription	Stomach Mucosa	stomach
18	chr19:56783200-56804000	Weak transcription	Brain Germinal Matrix	brain
19	chr19:56783200-56805400	Weak transcription	Brain Hippocampus Middle	brain
20	chr19:56785400-56803200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr19:56785400-56823600	Weak transcription	Osteobl	bone
22	chr19:56785600-56805400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr19:56785800-56802800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr19:56785800-56804000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr19:56786200-56804200	Weak transcription	Thymus	Thymus
26	chr19:56786800-56813000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr19:56788000-56804400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr19:56788200-56824400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr19:56788800-56802400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr19:56788800-56803200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr19:56788800-56804200	Weak transcription	Colonic Mucosa	Colon
32	chr19:56788800-56804200	Weak transcription	HSMM	muscle
33	chr19:56788800-56804400	Weak transcription	Ovary	ovary
34	chr19:56788800-56805800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr19:56788800-56806000	Weak transcription	Brain Anterior Caudate	brain
36	chr19:56788800-56813000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr19:56789000-56801600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr19:56789000-56802400	Weak transcription	Adipose Nuclei	Adipose
39	chr19:56789000-56803000	Weak transcription	HSMMtube	muscle
40	chr19:56789000-56804000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr19:56789000-56806200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr19:56789000-56817400	Weak transcription	Small Intestine	intestine
43	chr19:56789000-56823800	Weak transcription	Brain Angular Gyrus	brain
44	chr19:56789200-56803600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr19:56789200-56804200	Weak transcription	Liver	Liver
46	chr19:56789200-56804800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr19:56789600-56803000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr19:56790400-56803400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr19:56790600-56804200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr19:56790600-56820000	Weak transcription	Primary B cells from cord blood	blood

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