Variant report
Variant | nsv1058508 |
---|---|
Chromosome Location | chr16:32158595-32879772 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:3835)
- CpG islands (count:4217)
- Chromatin interactive region (count:2)
- LncRNA region (count:50)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr16:32345726-32345816 | HepG2 | liver: | n/a | n/a |
2 | ARID3A | chr16:32590243-32590613 | K562 | blood: | n/a | n/a |
3 | ARID3A | chr16:32818363-32818754 | HepG2 | liver: | n/a | n/a |
4 | ARID3A | chr16:32655940-32657281 | HepG2 | liver: | n/a | n/a |
5 | ARID3A | chr16:32817100-32817669 | HepG2 | liver: | n/a | n/a |
6 | ARID3A | chr16:32657798-32657972 | HepG2 | liver: | n/a | n/a |
7 | ARID3A | chr16:32295698-32295892 | HepG2 | liver: | n/a | n/a |
8 | ARID3A | chr16:32817496-32817662 | K562 | blood: | n/a | n/a |
9 | ARID3A | chr16:32876710-32876890 | HepG2 | liver: | n/a | n/a |
10 | ARID3A | chr16:32547652-32548159 | K562 | blood: | n/a | n/a |
11 | ATF1 | chr16:32194699-32194908 | K562 | blood: | n/a | n/a |
12 | ATF1 | chr16:32515726-32516011 | K562 | blood: | n/a | n/a |
13 | ATF1 | chr16:32832855-32832989 | K562 | blood: | n/a | n/a |
14 | ATF1 | chr16:32558594-32558903 | K562 | blood: | n/a | n/a |
15 | ATF1 | chr16:32526924-32527721 | K562 | blood: | n/a | n/a |
16 | ATF1 | chr16:32549843-32550009 | K562 | blood: | n/a | n/a |
17 | ATF1 | chr16:32363593-32363793 | K562 | blood: | n/a | n/a |
18 | ATF1 | chr16:32583782-32583972 | K562 | blood: | n/a | n/a |
19 | ATF1 | chr16:32547497-32547620 | K562 | blood: | n/a | n/a |
20 | ATF1 | chr16:32873309-32873509 | K562 | blood: | n/a | n/a |
21 | ATF1 | chr16:32550785-32551178 | K562 | blood: | n/a | n/a |
22 | ATF1 | chr16:32559923-32560294 | K562 | blood: | n/a | n/a |
23 | ATF1 | chr16:32521319-32521519 | K562 | blood: | n/a | n/a |
24 | ATF1 | chr16:32568174-32568349 | K562 | blood: | n/a | n/a |
25 | ATF3 | chr16:32876765-32876921 | K562 | blood: | n/a | n/a |
26 | BACH1 | chr16:32590237-32590618 | K562 | blood: | n/a | n/a |
27 | BACH1 | chr16:32531668-32531907 | K562 | blood: | n/a | n/a |
28 | BACH1 | chr16:32553830-32554374 | K562 | blood: | n/a | n/a |
29 | BACH1 | chr16:32639174-32639436 | H1-hESC | embryonic stem cell: | n/a | n/a |
30 | BATF | chr16:32335083-32335294 | GM12878 | blood: | n/a | n/a |
31 | BATF | chr16:32368458-32368823 | GM12878 | blood: | n/a | n/a |
32 | BATF | chr16:32800340-32800564 | GM12878 | blood: | n/a | n/a |
33 | BATF | chr16:32333643-32333817 | GM12878 | blood: | n/a | n/a |
34 | BATF | chr16:32435147-32435451 | GM12878 | blood: | n/a | n/a |
35 | BATF | chr16:32847350-32847649 | GM12878 | blood: | n/a | n/a |
36 | BATF | chr16:32451259-32451478 | GM12878 | blood: | n/a | n/a |
37 | BATF | chr16:32373029-32373235 | GM12878 | blood: | n/a | n/a |
38 | BATF | chr16:32848099-32848439 | GM12878 | blood: | n/a | n/a |
39 | BATF | chr16:32361068-32361342 | GM12878 | blood: | n/a | n/a |
40 | BATF | chr16:32815984-32816173 | GM12878 | blood: | n/a | n/a |
41 | BATF | chr16:32846943-32847213 | GM12878 | blood: | n/a | n/a |
42 | BATF | chr16:32801669-32801940 | GM12878 | blood: | n/a | n/a |
43 | BATF | chr16:32805420-32805638 | GM12878 | blood: | n/a | n/a |
44 | BATF | chr16:32727057-32727270 | GM12878 | blood: | n/a | n/a |
45 | BATF | chr16:32805422-32805612 | GM12878 | blood: | n/a | n/a |
46 | BATF | chr16:32652784-32652999 | GM12878 | blood: | n/a | n/a |
47 | BATF | chr16:32368414-32368848 | GM12878 | blood: | n/a | n/a |
48 | BATF | chr16:32652782-32652951 | GM12878 | blood: | n/a | n/a |
49 | BATF | chr16:32366962-32367454 | GM12878 | blood: | n/a | chr16:32367243-32367254 |
50 | BATF | chr16:32799795-32800035 | GM12878 | blood: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr16:32165196-32165246 | SKMC | muscle: | n/a |
2 | chr16:32858241-32858291 | PANC-1 | pancreas: | n/a |
3 | chr16:32290281-32290331 | AG09319 | gingival: | n/a |
4 | chr16:32858241-32858291 | GM12891 | blood: | n/a |
5 | chr16:32857923-32857973 | HMEC | breast: | n/a |
6 | chr16:32452502-32452552 | NT2-D1 | testis: | n/a |
7 | chr16:32360338-32360388 | HPAEpiC | pulmonary alveolar: | n/a |
8 | chr16:32178973-32179023 | NHDF-neo | bronchial: | n/a |
9 | chr16:32165196-32165246 | SKMC | muscle: | n/a |
10 | chr16:32858241-32858291 | PANC-1 | pancreas: | n/a |
11 | chr16:32290281-32290331 | AG09319 | gingival: | n/a |
12 | chr16:32858241-32858291 | GM12891 | blood: | n/a |
13 | chr16:32857923-32857973 | HMEC | breast: | n/a |
14 | chr16:32452502-32452552 | NT2-D1 | testis: | n/a |
15 | chr16:32360338-32360388 | HPAEpiC | pulmonary alveolar: | n/a |
16 | chr16:32178973-32179023 | NHDF-neo | bronchial: | n/a |
17 | chr16:32305114-32305164 | PANC-1 | pancreas: | n/a |
18 | chr16:32486334-32486384 | SK-N-MC | brain: | n/a |
19 | chr16:32662543-32662593 | HRE | kidney: | n/a |
20 | chr16:32289928-32289978 | HMEC | breast: | n/a |
21 | chr16:32289928-32289978 | HPAEpiC | pulmonary alveolar: | n/a |
22 | chr16:32359673-32359723 | HIPEpiC | eye: | n/a |
23 | chr16:32820218-32820268 | NHDF-neo | bronchial: | n/a |
24 | chr16:32326062-32326112 | AG04450 | lung: | fetal |
25 | chr16:32659887-32659937 | K562 | blood: | n/a |
26 | chr16:32212399-32212449 | Hepatocyte | liver: | n/a |
27 | chr16:32452502-32452552 | NH-A | brain: | n/a |
28 | chr16:32290371-32290421 | A549 | lung: | n/a |
29 | chr16:32485636-32485686 | HAEpiC | amniotic membrane: | n/a |
30 | chr16:32359673-32359723 | GM12892 | blood: | n/a |
31 | chr16:32330265-32330315 | H1-hESC | embryonic stem cell: | embryo |
32 | chr16:32487825-32487875 | CMK | blood: | n/a |
33 | chr16:32452725-32452775 | PrEC | prostate: | n/a |
34 | chr16:32276952-32277002 | BE2_C | brain: | n/a |
35 | chr16:32599433-32599483 | A549 | lung: | n/a |
36 | chr16:32359673-32359723 | SK-N-SH | brain: | n/a |
37 | chr16:32214185-32214235 | HAEpiC | amniotic membrane: | n/a |
38 | chr16:32857551-32857601 | Hepatocyte | liver: | n/a |
39 | chr16:32165196-32165246 | HPAEpiC | pulmonary alveolar: | n/a |
40 | chr16:32858846-32858896 | Hepatocyte | liver: | n/a |
41 | chr16:32165153-32165203 | HepG2 | liver: | n/a |
42 | chr16:32823584-32823634 | BJ | skin: | n/a |
43 | chr16:32486334-32486384 | GM12878 | blood: | n/a |
44 | chr16:32255825-32255875 | HCM | heart: | n/a |
45 | chr16:32853952-32854002 | HIPEpiC | eye: | n/a |
46 | chr16:32288799-32288849 | HEEpiC | esophagus: | n/a |
47 | chr16:32289757-32289807 | PFSK-1 | brain: | n/a |
48 | chr16:32822612-32822662 | CMK | blood: | n/a |
49 | chr16:32322028-32322078 | GM12878 | blood: | n/a |
50 | chr16:32452725-32452775 | AG10803 | skin: | n/a |
(count:2 , 50 per page) page:
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(count:50 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-TP53TG3-1 | chr16:32747230-32748010 | ENSG00000260845.1 |
2 | lnc-TP53TG3-2 | chr16:32465933-32470079 | ENSG00000261541.1 |
3 | lnc-AC133485.1.1-8 | chr16:32402131-32402273 | NONHSAT142015 |
4 | lnc-AC133485.1.1-2 | chr16:32626742-32626807 | NONHSAT142022 |
5 | lnc-AC133485.1.1-8 | chr16:32443002-32443139 | NONHSAT142015 |
6 | lnc-TP53TG3-7 | chr16:32265674-32265743 | ENSG00000260575.1 |
7 | lnc-AC133485.1.1-3 | chr16:32661637-32661722 | ENSG00000261569.1 |
8 | lnc-AC133485.1.1-2 | chr16:32619515-32619547 | NONHSAT142021 |
9 | lnc-AC133485.1.1-3 | chr16:32661463-32661540 | ENSG00000261569.1 |
10 | lnc-AC133485.1.1-8 | chr16:32399456-32399634 | NONHSAT142015 |
11 | lnc-TP53TG3-11 | chr16:32750948-32750981 | NONHSAT142041 |
12 | lnc-AC133485.1.1-2 | chr16:32613896-32614018 | NONHSAT142022 |
13 | lnc-TP53TG3-16 | chr16:32450390-32451887 | NONHSAT142016 |
14 | lnc-AC133485.1.1-3 | chr16:32676974-32677014 | ENSG00000260311.1 |
15 | lnc-AC133485.1.1-2 | chr16:32626742-32626953 | XLOC_011694 |
16 | lnc-AC133485.1.1-2 | chr16:32616227-32616285 | NONHSAT142022 |
17 | lnc-TP53TG3-4 | chr16:32274229-32274612 | ENSG00000260402.1 |
18 | lnc-AC133485.1.1-3 | chr16:32674902-32675277 | ENSG00000261569.1 |
19 | lnc-AC133485.1.1-3 | chr16:32661637-32661722 | ENSG00000261569.1 |
20 | lnc-AC133485.1.1-7 | chr16:32200583-32200802 | NONHSAT141994 |
21 | lnc-AC133485.1.1-8 | chr16:32403379-32403556 | NONHSAT142015 |
22 | lnc-AC133485.1.1-8 | chr16:32416298-32416473 | NONHSAT142015 |
23 | lnc-TP53TG3-4 | chr16:32275068-32275108 | ENSG00000260402.1 |
24 | lnc-TP53TG3-16 | chr16:32452294-32452480 | NONHSAT142016 |
25 | lnc-AC133485.1.1-1 | chr16:32204071-32204851 | ENSG00000260847.1 |
26 | lnc-TP53TG3-3 | chr16:32335100-32335382 | XLOC_011921 |
27 | lnc-TP53TG3-11 | chr16:32751296-32751487 | NONHSAT142041 |
28 | lnc-AC133485.1.1-4 | chr16:32686358-32686427 | ENSG00000260974.1 |
29 | lnc-AC133485.1.1-2 | chr16:32619006-32619076 | NONHSAT142022 |
30 | lnc-AC133485.1.1-2 | chr16:32616957-32617035 | NONHSAT142021 |
31 | lnc-AC133485.1.1-3 | chr16:32660514-32660649 | ENSG00000261569.1 |
32 | lnc-TP53TG3-3 | chr16:32334099-32334218 | XLOC_011921 |
33 | lnc-AC133485.1.1-8 | chr16:32442004-32442108 | NONHSAT142015 |
34 | lnc-TP53TG3-7 | chr16:32261941-32262132 | ENSG00000260575.1 |
35 | lnc-AC133485.1.1-2 | chr16:32613844-32613953 | NONHSAT142021 |
36 | lnc-AC133485.1.1-2 | chr16:32611620-32611754 | NONHSAT142021 |
37 | lnc-AC133485.1.1-2 | chr16:32618849-32619005 | NONHSAT142021 |
38 | lnc-AC133485.1.1-4 | chr16:32689961-32690152 | ENSG00000260974.1 |
39 | lnc-AC133485.1.1-2 | chr16:32616227-32616285 | NONHSAT142021 |
40 | lnc-AC133485.1.1-2 | chr16:32626088-32626324 | XLOC_011694 |
41 | lnc-AC133485.1.1-2 | chr16:32626287-32626324 | NONHSAT142022 |
42 | lnc-AC133485.1.1-8 | chr16:32438035-32438184 | NONHSAT142015 |
43 | lnc-AC133485.1.1-8 | chr16:32447309-32447521 | NONHSAT142015 |
44 | lnc-AC133485.1.1-3 | chr16:32677470-32677854 | ENSG00000260311.1 |
45 | lnc-TP53TG3-1 | chr16:32752331-32752415 | ENSG00000260845.1 |
46 | lnc-AC133485.1.1-2 | chr16:32626903-32626960 | NONHSAT142022 |
47 | lnc-AC133485.1.1-1 | chr16:32199654-32199738 | ENSG00000260847.1 |
48 | lnc-AC133485.1.1-2 | chr16:32619515-32619545 | NONHSAT142022 |
49 | lnc-AC133485.1.1-3 | chr16:32661076-32661211 | ENSG00000261569.1 |
50 | lnc-AC133485.1.1-8 | chr16:32437097-32437203 | NONHSAT142015 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000260864 | TF binding region |
IGHV2OR16-5 | TF binding region |
ENSG00000261111 | TF binding region |
ENSG00000261263 | TF binding region |
TP53TG3 | TF binding region |
ENSG00000260047 | TF binding region |
ENSG00000259966 | TF binding region |
ENSG00000260540 | TF binding region |
ENSG00000260344 | TF binding region |
TP53TG3D | TF binding region |
ENSG00000261108 | TF binding region |
ENSG00000261541 | TF binding region |
ENSG00000260402 | TF binding region |
ENSG00000261127 | TF binding region |
ENSG00000260649 | TF binding region |
HERC2P5 | TF binding region |
ACTR3BP3 | TF binding region |
ENSG00000260158 | TF binding region |
ENSG00000260662 | TF binding region |
ENSG00000260575 | TF binding region |
ENSG00000259822 | TF binding region |
HERC2P4 | TF binding region |
ENSG00000261569 | TF binding region |
ENSG00000261719 | TF binding region |
ENSG00000261391 | TF binding region |
ENSG00000260847 | TF binding region |
ENSG00000260974 | TF binding region |
ENSG00000262187 | TF binding region |
ENSG00000260845 | TF binding region |
ENSG00000260866 | TF binding region |
ENSG00000259934 | TF binding region |
ABCD1P3 | TF binding region |
PABPC1P13 | TF binding region |
ENSG00000260516 | TF binding region |
ENSG00000260311 | TF binding region |
ENSG00000260864 | CpG island |
IGHV2OR16-5 | CpG island |
ENSG00000261111 | CpG island |
ENSG00000261263 | CpG island |
TP53TG3 | CpG island |
ENSG00000260047 | CpG island |
ENSG00000259966 | CpG island |
ENSG00000260540 | CpG island |
ENSG00000260344 | CpG island |
TP53TG3D | CpG island |
ENSG00000261108 | CpG island |
ENSG00000261541 | CpG island |
ENSG00000260402 | CpG island |
ENSG00000261127 | CpG island |
ENSG00000260649 | CpG island |
HERC2P5 | CpG island |
ACTR3BP3 | CpG island |
ENSG00000260158 | CpG island |
ENSG00000260662 | CpG island |
ENSG00000260575 | CpG island |
ENSG00000259822 | CpG island |
HERC2P4 | CpG island |
ENSG00000261569 | CpG island |
ENSG00000261719 | CpG island |
ENSG00000261391 | CpG island |
ENSG00000260847 | CpG island |
ENSG00000260974 | CpG island |
ENSG00000262187 | CpG island |
ENSG00000260845 | CpG island |
ENSG00000260866 | CpG island |
ENSG00000259934 | CpG island |
ABCD1P3 | CpG island |
PABPC1P13 | CpG island |
ENSG00000260516 | CpG island |
ENSG00000260311 | CpG island |
LBR | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs553539019 | chr16:32163842-32163843 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
2 | rs572149705 | chr16:32163935-32163936 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
3 | rs468566 | chr16:32163940-32163941 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
4 | rs545470032 | chr16:32163944-32163945 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
5 | rs564140145 | chr16:32163948-32163949 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
6 | rs372396120 | chr16:32163949-32163950 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
7 | rs180980462 | chr16:32163956-32163957 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
8 | rs543676765 | chr16:32164009-32164010 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
9 | rs58456141 | chr16:32164030-32164031 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
10 | rs562055298 | chr16:32164040-32164041 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
11 | rs529402350 | chr16:32164061-32164062 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
12 | rs548017174 | chr16:32164062-32164063 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
13 | rs62042678 | chr16:32164063-32164064 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
14 | rs533500961 | chr16:32164097-32164098 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
15 | rs551463630 | chr16:32164124-32164125 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
16 | rs570036485 | chr16:32164125-32164126 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
17 | rs537457838 | chr16:32164144-32164145 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
18 | rs556454883 | chr16:32164145-32164146 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
19 | rs62042679 | chr16:32164153-32164154 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
20 | rs535286517 | chr16:32164165-32164166 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
21 | rs572741048 | chr16:32164180-32164181 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
22 | rs202090773 | chr16:32164181-32164182 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
23 | rs630187 | chr16:32164197-32164198 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
24 | rs553971503 | chr16:32164204-32164205 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
25 | rs572027954 | chr16:32164206-32164207 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
26 | rs539494501 | chr16:32164238-32164239 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
27 | rs557586122 | chr16:32164253-32164254 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
28 | rs575593150 | chr16:32164270-32164271 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
29 | rs543017858 | chr16:32164278-32164279 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
30 | rs562043051 | chr16:32164279-32164280 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
31 | rs574035056 | chr16:32164291-32164292 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
32 | rs150031 | chr16:32164313-32164314 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
33 | rs185253451 | chr16:32164323-32164324 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
34 | rs371066 | chr16:32164327-32164328 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
35 | rs460199 | chr16:32164335-32164336 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
36 | rs559924576 | chr16:32164357-32164358 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
37 | rs148666090 | chr16:32164363-32164364 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
38 | rs190309381 | chr16:32164365-32164366 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
39 | rs467815 | chr16:32164370-32164371 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
40 | rs530877958 | chr16:32164390-32164391 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
41 | rs139857306 | chr16:32164391-32164392 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
42 | rs2909267 | chr16:32164394-32164395 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
43 | rs549443734 | chr16:32164407-32164408 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
44 | rs57800158 | chr16:32164413-32164414 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
45 | rs549379828 | chr16:32165114-32165115 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
46 | rs561240611 | chr16:32165123-32165124 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
47 | rs528495979 | chr16:32165137-32165138 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
48 | rs547631811 | chr16:32165153-32165154 | Inactive region | TF binding regionCpG island | 1 gene(s) | Overlapped CNVs | n/a |
49 | rs565841147 | chr16:32165163-32165164 | Inactive region | TF binding regionCpG island | 1 gene(s) | Overlapped CNVs | n/a |
50 | rs544415509 | chr16:32165171-32165172 | Inactive region | TF binding regionCpG island | 1 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Hodgkin''s lymphoma | 20651079 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Melanoma | 18172304 | CNVD |
Breast cancer | 16608533 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 17133270 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Lung adenocarcinoma | 17086460 | CNVD |
Lung cancer | 17086460 | CNVD |
Autism | 22566537 | CNVD |
Intellectual disability | 22566537 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 17603634 | CNVD |
Breast cancer | 21264507 | CNVD |
Cervical cancer | 21063398 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Autism | 19415332 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Schizophrenia | 22958593 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
Breast cancer | 21509527 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Autism | 22495311 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Breast cancer | 21858162 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Mental retardation | 19951919 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Bladder cancer | 21909424 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Breast cancer | 21785460 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Breast cancer | 21990379 | CNVD |
Astrocytoma | 22246337 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Epilepsy | 22499536 | CNVD |
Attention deficit hyperactivity disorder | 21324949 | CNVD |
Austim spectrum disorder | 21302340 | CNVD |
Autism | 22513405 | CNVD |
Autism | 22958593 | CNVD |
Autism | 18184952 | CNVD |
Autism | 19966786 | CNVD |
Autism | 21394203 | CNVD |
Autism | 21969575 | CNVD |
Autism | 22241247 | CNVD |
Autism | 20970697 | CNVD |
Autism | 20942916 | CNVD |
Epilepsy | 20970697 | CNVD |
Intellectual disability | 22045946 | CNVD |
Mental retardation | 19966786 | CNVD |
Developmental delay | 20808231 | CNVD |
Obesity | 20808231 | CNVD |
Autism | 18923514 | CNVD |
Obesity | 21881559 | CNVD |
Obesity | 21956041 | CNVD |
Autism | 20659124 | CNVD |
Mental retardation | 21062444 | CNVD |
Schizophrenia | 20587603 | CNVD |
Schizophrenia | 21285140 | CNVD |
Schizophrenia | 22885689 | CNVD |
Schizophrenia | 20553308 | CNVD |
Schizophrenia | 20970697 | CNVD |
Schizophrenia | 20433910 | CNVD |
Schizophrenia | 22241247 | CNVD |
Autism | 19242545 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Intracranial ependymoma | 16609018 | CNVD |
Schizophrenia | 21399695 | CNVD |
Autism | 21956041 | CNVD |
Disorders of sex development | 21048976 | CNVD |
Autism | 22067053 | CNVD |
Autism | 18156158 | CNVD |
Mental retardation | 20152051 | CNVD |
Autism | 19218893 | CNVD |
Autism | 21289514 | CNVD |
Schizophrenia | 19855392 | CNVD |
neurodevelopmental Syndrome | 20503337 | CNVD |
Benign familial neonatal-infantile seizures | 21060786 | CNVD |
Low-grade fibromyxoid sarcoma | 0 | CNVD |
Cancer | 21183584 | CNVD |
Low-grade fibromyxoid sarcoma | 21536545 | CNVD |
Breast cancer | 21045282 | CNVD |
Neuroblastoma | 20406844 | CNVD |
Autism | 19050728 | CNVD |
Epilepsy | 20923578 | CNVD |
Psychiatric disorder | 19050728 | CNVD |
Schizophrenia | 19348701 | CNVD |
Attention deficit hyperactivity disorder | 19097825 | CNVD |
Autism | 20964600 | CNVD |
Schizophrenia | 19955444 | CNVD |
Schizophrenia | 18990708 | CNVD |
Schizophrenia | 19571808 | CNVD |
Breast cancer | 20409316 | CNVD |
Severe combined immunodeficiency | 19097825 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Autism | 18522746 | CNVD |
Sezary syndrome | 18413736 | CNVD |
Wilms tumour | 21544195 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Cancer | 20164920 | CNVD |
Autism | 19287141 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Schizophrenia | 20967226 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 21364760 | CNVD |
Breast cancer | 17142309 | CNVD |
Cancer | 20164919 | CNVD |
Breast cancer | 22522925 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Congenital anomalies of the kidney and urinary tract | 18316590 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Non-syndromic sensorineural hearing loss | 22297974 | CNVD |
Recurrent pregnancy loss | 19789632 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
Glioma | 20126413 | CNVD |
Osteosarcoma | 21215367 | CNVD |
Autism | 21865298 | CNVD |
Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
Stenocardia | 21860640 | CNVD |
Vasospasm | 21860640 | CNVD |
Melanoma | 20877625 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:32178000-32179600 | Weak transcription | Placenta | Placenta |
2 | chr16:32178200-32180000 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
3 | chr16:32178400-32193000 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
4 | chr16:32178800-32181200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
5 | chr16:32179000-32181600 | Weak transcription | K562 | blood |
6 | chr16:32179200-32192400 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
7 | chr16:32179600-32180000 | Enhancers | Dnd41 | blood |
8 | chr16:32179600-32181000 | Strong transcription | Placenta | Placenta |
9 | chr16:32179800-32181000 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
10 | chr16:32180000-32180200 | Active TSS | Pancreas | Pancrea |
11 | chr16:32180000-32180800 | Genic enhancers | Dnd41 | blood |
12 | chr16:32180000-32181200 | Strong transcription | Fetal Adrenal Gland | Adrenal Gland |
13 | chr16:32180200-32180400 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
14 | chr16:32180200-32180800 | ZNF genes & repeats | Aorta | Aorta |
15 | chr16:32180200-32181000 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
16 | chr16:32180200-32185800 | Weak transcription | Pancreas | Pancrea |
17 | chr16:32180200-32191200 | Weak transcription | Gastric | stomach |
18 | chr16:32180800-32181200 | Enhancers | Dnd41 | blood |
19 | chr16:32180800-32184200 | Weak transcription | Aorta | Aorta |
20 | chr16:32181000-32184400 | Weak transcription | Placenta | Placenta |
21 | chr16:32181200-32183000 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
22 | chr16:32181200-32199000 | Weak transcription | Ovary | ovary |
23 | chr16:32198000-32198600 | Active TSS | Dnd41 | blood |
24 | chr16:32198200-32199200 | Active TSS | A549 | lung |
25 | chr16:32198600-32199400 | Weak transcription | Dnd41 | blood |
26 | chr16:32198800-32199200 | Active TSS | Fetal Adrenal Gland | Adrenal Gland |
27 | chr16:32199000-32199600 | Active TSS | Ovary | ovary |
28 | chr16:32199200-32199600 | Active TSS | Esophagus | oesophagus |
29 | chr16:32199400-32199800 | Active TSS | Primary B cells from peripheral blood | blood |
30 | chr16:32199400-32199800 | Active TSS | Primary T cells fromperipheralblood | blood |
31 | chr16:32199400-32199800 | Active TSS | Primary T helper naive cells fromperipheralblood | blood |
32 | chr16:32199400-32199800 | Active TSS | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
33 | chr16:32199400-32200200 | Active TSS | Dnd41 | blood |
34 | chr16:32200200-32200400 | Flanking Active TSS | Dnd41 | blood |
35 | chr16:32214000-32214200 | ZNF genes & repeats | Foreskin Melanocyte Primary Cells skin01 | Skin |
36 | chr16:32214000-32214200 | Enhancers | Placenta | Placenta |
37 | chr16:32256600-32256800 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
38 | chr16:32257400-32257600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
39 | chr16:32264200-32266000 | Active TSS | Breast Myoepithelial Primary Cells | Breast |
40 | chr16:32264400-32265000 | Active TSS | Rectal Mucosa Donor 29 | rectum |
41 | chr16:32264400-32265800 | Active TSS | Brain Dorsolateral Prefrontal Cortex | brain |
42 | chr16:32264800-32265000 | Active TSS | Primary T cells fromperipheralblood | blood |
43 | chr16:32264800-32265000 | Active TSS | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
44 | chr16:32264800-32265200 | Active TSS | Brain Hippocampus Middle | brain |
45 | chr16:32264800-32265200 | Bivalent/Poised TSS | Fetal Adrenal Gland | Adrenal Gland |
46 | chr16:32264800-32265200 | Active TSS | HSMMtube | muscle |
47 | chr16:32264800-32265200 | Active TSS | Osteobl | bone |
48 | chr16:32264800-32265800 | ZNF genes & repeats | Primary monocytes fromperipheralblood | blood |
49 | chr16:32264800-32265800 | Active TSS | Primary B cells from peripheral blood | blood |
50 | chr16:32264800-32265800 | Active TSS | Primary Natural Killer cells fromperipheralblood | blood |