Variant report

Variant	nsv1059186
Chromosome Location	chr18:45360012-45407405
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:340)
CpG islands
(count:61)
Chromatin interactive
region (count:32)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:2)

(count:340 , 50 per page) page: 1 2 3 4 5 6 7

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr18:45397603-45397941	HepG2	liver:	n/a	chr18:45397770-45397786
2	BACH1	chr18:45391890-45391917	K562	blood:	n/a	n/a
3	BATF	chr18:45379570-45379813	GM12878	blood:	n/a	n/a
4	BATF	chr18:45379443-45379821	GM12878	blood:	n/a	n/a
5	BCL11A	chr18:45379557-45379920	GM12878	blood:	n/a	n/a
6	BCL11A	chr18:45379518-45379810	GM12878	blood:	n/a	n/a
7	BHLHE40	chr18:45379541-45379905	HepG2	liver:	n/a	n/a
8	CEBPB	chr18:45370562-45370782	A549	lung:	n/a	chr18:45370610-45370619 chr18:45370608-45370621 chr18:45370610-45370619 chr18:45370610-45370619 chr18:45370610-45370621 chr18:45370608-45370619 chr18:45370610-45370619
9	CEBPB	chr18:45370450-45370801	K562	blood:	n/a	chr18:45370610-45370619 chr18:45370608-45370621 chr18:45370610-45370619 chr18:45370610-45370619 chr18:45370610-45370621 chr18:45370608-45370619 chr18:45370610-45370619
10	CEBPB	chr18:45379586-45379786	K562	blood:	n/a	n/a
11	CEBPB	chr18:45397656-45397855	HepG2	liver:	n/a	chr18:45397738-45397749
12	CEBPB	chr18:45390754-45391063	HepG2	liver:	n/a	n/a
13	CEBPB	chr18:45370495-45370786	HepG2	liver:	n/a	chr18:45370610-45370619 chr18:45370608-45370621 chr18:45370610-45370619 chr18:45370610-45370619 chr18:45370610-45370621 chr18:45370608-45370619 chr18:45370610-45370619
14	CEBPB	chr18:45370478-45370783	IMR90	lung:	n/a	chr18:45370610-45370619 chr18:45370608-45370621 chr18:45370610-45370619 chr18:45370610-45370619 chr18:45370610-45370621 chr18:45370608-45370619 chr18:45370610-45370619
15	CEBPB	chr18:45389601-45389752	A549	lung:	n/a	n/a
16	CEBPB	chr18:45390727-45391043	IMR90	lung:	n/a	n/a
17	CEBPB	chr18:45390790-45391041	A549	lung:	n/a	n/a
18	CEBPD	chr18:45379393-45379959	K562	blood:	n/a	n/a
19	CHD1	chr18:45380009-45380040	H1-hESC	embryonic stem cell:	n/a	n/a
20	CTCF	chr18:45372789-45372882	Hela-S3	cervix:	n/a	n/a
21	CTCF	chr18:45365920-45366070	WERI-Rb-1	eye:	n/a	n/a
22	CTCF	chr18:45403320-45403470	HCPEpiC	choroid plexus:	n/a	n/a
23	CTCF	chr18:45397160-45397310	HMEC	breast:	n/a	n/a
24	CTCF	chr18:45391492-45391566	Lung_OC	lung:	n/a	n/a
25	CTCF	chr18:45391452-45391621	GM12878	blood:	n/a	n/a
26	CTCF	chr18:45391444-45391551	MCF-7	breast:	n/a	n/a
27	CTCF	chr18:45391400-45391550	HMEC	breast:	n/a	n/a
28	CTCF	chr18:45397161-45397193	MCF-7	breast:	n/a	n/a
29	CTCF	chr18:45403352-45403411	Medullo	brain:	n/a	n/a
30	CTCF	chr18:45403280-45403430	HPAF	blood vessel:	n/a	n/a
31	CTCF	chr18:45397100-45397250	HRPEpiC	eye:	n/a	n/a
32	CTCF	chr18:45403240-45403390	GM12867	blood:	n/a	n/a
33	CTCF	chr18:45365680-45365830	HMF	breast:	n/a	n/a
34	CTCF	chr18:45397000-45397150	HPAF	blood vessel:	n/a	n/a
35	CTCF	chr18:45403240-45403390	HCM	heart:	n/a	n/a
36	CTCF	chr18:45379588-45379789	K562	blood:	n/a	n/a
37	CTCF	chr18:45391400-45391550	HPAF	blood vessel:	n/a	n/a
38	CTCF	chr18:45397102-45397279	Hela-S3	cervix:	n/a	n/a
39	CTCF	chr18:45403320-45403470	HPAF	blood vessel:	n/a	n/a
40	CTCF	chr18:45403296-45403298	Hela-S3	cervix:	n/a	n/a
41	CTCF	chr18:45403300-45403450	HCFaa	heart:	n/a	n/a
42	CTCF	chr18:45391482-45391517	LNCaP	prostate:	n/a	n/a
43	CTCF	chr18:45403260-45403410	AG04449	skin:	n/a	n/a
44	CTCF	chr18:45397097-45397248	GM12878	blood:	n/a	n/a
45	CTCF	chr18:45397866-45397900	Fibrobl	skin:	n/a	n/a
46	CTCF	chr18:45391431-45391563	Hela-S3	cervix:	n/a	n/a
47	CTCF	chr18:45397120-45397270	HPAF	blood vessel:	n/a	n/a
48	CTCF	chr18:45399007-45399037	Spleen_OC	spleen:	n/a	n/a
49	CTCF	chr18:45365600-45365750	HFF	foreskin:	n/a	n/a
50	CTCF	chr18:45403260-45403410	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr18:45364325-45364375	T-47D	breast:	n/a
2	chr18:45364325-45364375	BJ	skin:	n/a
3	chr18:45364325-45364375	HCM	heart:	n/a
4	chr18:45364325-45364375	MCF10A-Er-Src	breast:	n/a
5	chr18:45364325-45364375	RPTEC	kidney:	n/a
6	chr18:45364325-45364375	HL-60	blood:	n/a
7	chr18:45364325-45364375	HepG2	liver:	n/a
8	chr18:45364325-45364375	A549	lung:	n/a
9	chr18:45364325-45364375	AG04450	lung:	fetal
10	chr18:45364325-45364375	NH-A	brain:	n/a
11	chr18:45364325-45364375	Hepatocyte	liver:	n/a
12	chr18:45364325-45364375	HCT-116	colon:	n/a
13	chr18:45364325-45364375	NB4	blood:	n/a
14	chr18:45364325-45364375	Jurkat	blood:	n/a
15	chr18:45364325-45364375	GM12891	blood:	n/a
16	chr18:45364325-45364375	PFSK-1	brain:	n/a
17	chr18:45364325-45364375	PANC-1	pancreas:	n/a
18	chr18:45364325-45364375	BE2_C	brain:	n/a
19	chr18:45364325-45364375	HMEC	breast:	n/a
20	chr18:45364325-45364375	LNCaP	prostate:	n/a
21	chr18:45364325-45364375	SK-N-SH	brain:	n/a
22	chr18:45364325-45364375	MCF-7	breast:	n/a
23	chr18:45364325-45364375	HIPEpiC	eye:	n/a
24	chr18:45364325-45364375	NT2-D1	testis:	n/a
25	chr18:45364325-45364375	HEK293	kidney:	embryo
26	chr18:45364325-45364375	ovcar-3	ovarian:	n/a
27	chr18:45364325-45364375	H1-hESC	embryonic stem cell:	embryo
28	chr18:45364325-45364375	HAEpiC	amniotic membrane:	n/a
29	chr18:45364325-45364375	HCF	heart:	n/a
30	chr18:45364325-45364375	AoSMC	blood vessel:	n/a
31	chr18:45364325-45364375	GM19239	blood:	n/a
32	chr18:45364325-45364375	SK-N-SH_RA	brain:	n/a
33	chr18:45364325-45364375	HCPEpiC	choroid plexus:	n/a
34	chr18:45364325-45364375	GM06990	blood:	n/a
35	chr18:45364325-45364375	SK-N-MC	brain:	n/a
36	chr18:45364325-45364375	ECC-1	luminal epithelium:	n/a
37	chr18:45364325-45364375	HNPCEpiC	eye:	n/a
38	chr18:45364325-45364375	AG09309	skin:	n/a
39	chr18:45364325-45364375	NHDF-neo	bronchial:	n/a
40	chr18:45364325-45364375	HEEpiC	esophagus:	n/a
41	chr18:45364325-45364375	Caco-2	colon:	n/a
42	chr18:45364325-45364375	PrEC	prostate:	n/a
43	chr18:45364325-45364375	HRE	kidney:	n/a
44	chr18:45364325-45364375	HRCEpiC	kidney:	n/a
45	chr18:45364325-45364375	GM12878	blood:	n/a
46	chr18:45364325-45364375	HRPEpiC	eye:	n/a
47	chr18:45364325-45364375	AG04449	skin:	fetal
48	chr18:45364325-45364375	U87	brain:	n/a
49	chr18:45364325-45364375	Hela-S3	cervix:	n/a
50	chr18:45364325-45364375	CMK	blood:	n/a

(count:32 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr18:45356981..45361316-chr18:45361915..45364794,4	K562	blood:
2	chr16:2732028..2732807-chr18:45399145..45399845,2	Hela-S3	cervix:
3	chr18:45370062..45371817-chr18:45453252..45455227,2	MCF-7	breast:
4	chr18:45356981..45361316-chr18:45361915..45364794,4	K562	blood:
5	chr18:45401120..45404562-chr18:45404621..45407593,3	K562	blood:
6	chr18:45356981..45360648-chr18:45361915..45364207,3	K562	blood:
7	chr18:45388105..45390269-chr18:45393560..45395389,2	K562	blood:
8	chr18:45391818..45394321-chr18:45399787..45402085,2	MCF-7	breast:
9	chr18:45402056..45405449-chr18:45544846..45548415,3	MCF-7	breast:
10	chr18:45396878..45399642-chr18:45401844..45403752,2	MCF-7	breast:
11	chr18:45406363..45407026-chr6:35439781..35440543,2	Hela-S3	cervix:
12	chr17:57916192..57918375-chr18:45387752..45390655,2	MCF-7	breast:
13	chr18:45356981..45360648-chr18:45361915..45364207,3	K562	blood:
14	chr18:45368468..45370509-chr18:45372236..45375671,3	K562	blood:
15	chr18:45393055..45395642-chr18:45402481..45404020,2	MCF-7	breast:
16	chr18:45396878..45399642-chr18:45401844..45403752,2	MCF-7	breast:
17	chr18:45388105..45390269-chr18:45393560..45395389,2	K562	blood:
18	chr18:45367507..45370509-chr18:45371769..45374946,4	K562	blood:
19	chr18:45401120..45404562-chr18:45404621..45407593,3	K562	blood:
20	chr18:45400689..45404562-chr18:45404621..45407103,3	K562	blood:
21	chr18:45367366..45369056-chr18:45455430..45458300,2	MCF-7	breast:
22	chr18:45367507..45370509-chr18:45371769..45374946,4	K562	blood:
23	chr18:45355527..45357480-chr18:45358347..45361404,3	K562	blood:
24	chr18:45400689..45404562-chr18:45404621..45407103,3	K562	blood:
25	chr18:45391818..45394321-chr18:45399787..45402085,2	MCF-7	breast:
26	chr18:45379137..45382377-chr18:45391896..45394821,3	K562	blood:
27	chr18:45403717..45406207-chr18:45456494..45458562,2	K562	blood:
28	chr18:45390223..45391741-chr18:45457289..45459666,2	MCF-7	breast:
29	chr18:45372242..45375198-chr18:45455382..45457471,2	K562	blood:
30	chr18:45393055..45395642-chr18:45402481..45404020,2	MCF-7	breast:
31	chr18:45368468..45370509-chr18:45372236..45375671,3	K562	blood:
32	chr18:45402129..45404983-chr18:45456603..45459042,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZBTB7C-5	chr18:45396844-45396935	NONHSAT059175
2	lnc-ZBTB7C-4	chr18:45404666-45404867	ENSG00000269365.1

No data

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	SMAD2	hsa-miR-200b-3p	chr18:45367863-45367857
2	SMAD2	hsa-miR-200a-3p	chr18:45371474-45371494

Variant related genes	Relation type
ENSG00000267541	TF binding region
ENSG00000267541	CpG island
ENSG00000167977	chromatin interactions
ENSG00000267541	chromatin interactions
ENSG00000175387	chromatin interactions

Extended variants
information (count: 1931 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:1931 , 50 per page) page: 1 2 3 4 5 6 7 ... 39

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs16958495	chr18:45360012-45360013	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs372061225	chr18:45360017-45360018	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs16958497	chr18:45360046-45360047	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs186767230	chr18:45360084-45360085	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs16958498	chr18:45360111-45360112	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs563395112	chr18:45360127-45360128	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs140519562	chr18:45360155-45360156	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs533785198	chr18:45360173-45360174	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs76235222	chr18:45360180-45360181	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs567457577	chr18:45360183-45360184	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs115139672	chr18:45360184-45360185	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs556258265	chr18:45360189-45360190	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs76248022	chr18:45360194-45360195	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs545340041	chr18:45360227-45360228	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs559240000	chr18:45360228-45360229	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs149712371	chr18:45360257-45360258	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs16958499	chr18:45360266-45360267	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs541672095	chr18:45360285-45360286	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs145555221	chr18:45360286-45360287	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs573782302	chr18:45360304-45360305	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs191574150	chr18:45360334-45360335	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs562298582	chr18:45360335-45360336	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs2156021	chr18:45360349-45360350	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs531346814	chr18:45360368-45360369	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs2156020	chr18:45360379-45360380	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs551384138	chr18:45360396-45360397	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs559461502	chr18:45360440-45360441	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs528550552	chr18:45360492-45360493	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs184083150	chr18:45360497-45360498	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs187253715	chr18:45360508-45360509	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs567148910	chr18:45360518-45360519	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs148860125	chr18:45360523-45360524	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs556629929	chr18:45360583-45360584	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs569938952	chr18:45360591-45360592	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs142558408	chr18:45360630-45360631	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs192837348	chr18:45360657-45360658	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs572809384	chr18:45360662-45360663	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs375734196	chr18:45360664-45360665	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs114796865	chr18:45360768-45360769	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs16958501	chr18:45360776-45360777	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs555171457	chr18:45360799-45360800	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs113134941	chr18:45360826-45360827	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs542317148	chr18:45360845-45360846	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs562651074	chr18:45360860-45360861	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs531186544	chr18:45360898-45360899	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs1981	chr18:45360991-45360992	Weak transcription Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
47	rs371542238	chr18:45361000-45361001	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs202229182	chr18:45361016-45361017	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs71802435	chr18:45361017-45361018	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs58732602	chr18:45361019-45361020	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Follicular lymphoma	20505157	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	18923191	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Trisomy 18 syndrome	17576883	CNVD
lymphocytic leukemia	21291569	CNVD
Barrett''s syndrome	19417022	CNVD
Ewing''s sarcoma	17952124	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
18q deletion syndrome	19533772	CNVD
Acute myeloid leukemia	16864856	CNVD
Colorectal cancer	21102417	CNVD
Colorectal cancer	20709793	CNVD
Pancreatic cancer	21811562	CNVD
Basal cell lymphoma	21115979	CNVD
Mucosa-associated lymphoid tissue lymphomas	21459788	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
colon cancer	17210682	CNVD
Breast cancer	21785460	CNVD
Prostate cancer	16573809	CNVD
Autism	16446308	CNVD
Colorectal cancer	19359472	CNVD
Colorectal cancer	16272173	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	18056178	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Metanephric adenoma	20802469	CNVD
small cell lung cancer	20016488	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Colorectal cancer	21297112	CNVD
Breast cancer	17603634	CNVD
Thyroid cancer	19087340	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
Colorectal cancer	19150955	CNVD
Acute myeloid leukemia	21251322	CNVD
Colorectal cancer	16912164	CNVD
Lung cancer	18438408	CNVD
Seminomas	18059402	CNVD
Breast cancer	16272173	CNVD
Breast cancer	17133270	CNVD
prenatal diagnosis	22389664	CNVD
Medulloblastoma	16783165	CNVD
Neuroblastoma	21508638	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16461302	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Breast cancer	16397240	CNVD
Non-small cell lung cancer	21829676	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Pilomyxoid astrocytoma	17436254	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
Burkitt''s lymphoma	18698080	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Cancer	17160897	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Gastric cancer	16891809	CNVD
Idiopathic thrombocytopenic purpura	19566914	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16774939	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Asthma	20841430	CNVD
Colorectal cancer	21645411	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Prostate cancer	22341455	CNVD

Chromatin state (count:1576 , 50 per page) page: 1 2 3 4 5 6 7 ... 32

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45335400-45365600	Weak transcription	Gastric	stomach
2	chr18:45340400-45369400	Weak transcription	Fetal Stomach	stomach
3	chr18:45341000-45364200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr18:45342200-45384200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr18:45342400-45365400	Weak transcription	Psoas Muscle	Psoas
6	chr18:45344000-45361400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr18:45344000-45373000	Weak transcription	Pancreas	Pancrea
8	chr18:45344200-45364800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr18:45344200-45364800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr18:45344400-45365400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr18:45344400-45365600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr18:45344600-45365400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr18:45344600-45368000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr18:45344800-45362400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr18:45345000-45368000	Weak transcription	Colon Smooth Muscle	Colon
16	chr18:45345200-45365400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr18:45345400-45363400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr18:45345400-45400200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr18:45346400-45365600	Weak transcription	Esophagus	oesophagus
20	chr18:45346600-45361400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr18:45347600-45381800	Weak transcription	Right Ventricle	heart
22	chr18:45348200-45366200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr18:45348400-45365600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr18:45348400-45365600	Weak transcription	NHEK	skin
25	chr18:45348800-45362400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr18:45349400-45361400	Weak transcription	HMEC	breast
27	chr18:45349800-45365600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr18:45350000-45364000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr18:45350000-45365400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr18:45350200-45363000	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr18:45350400-45362400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr18:45350400-45364000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr18:45350800-45365000	Weak transcription	Brain Hippocampus Middle	brain
34	chr18:45350800-45365600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr18:45350800-45367600	Weak transcription	K562	blood
36	chr18:45351000-45365600	Weak transcription	Brain Substantia Nigra	brain
37	chr18:45351000-45374600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr18:45351200-45362600	Weak transcription	Liver	Liver
39	chr18:45351600-45365800	Weak transcription	Brain Anterior Caudate	brain
40	chr18:45351800-45367800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr18:45352000-45364600	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr18:45352000-45365400	Weak transcription	Lung	lung
43	chr18:45352200-45362400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr18:45352400-45365400	Weak transcription	Left Ventricle	heart
45	chr18:45352400-45365600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr18:45352800-45365000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr18:45353000-45363000	Weak transcription	Fetal Lung	lung
48	chr18:45353000-45381200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr18:45353200-45365600	Weak transcription	Fetal Brain Female	brain
50	chr18:45353200-45365600	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links