Variant report

Variant	nsv1059310
Chromosome Location	chr20:14816303-15080340
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2379)
CpG islands
(count:62)
Chromatin interactive
region (count:44)
LncRNA
region (count:25)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2379 , 50 per page) page: 1 2 3 4 5 6 7 ... 48

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr20:15041045-15042049	HepG2	liver:	n/a	n/a
2	ARID3A	chr20:15042539-15043096	HepG2	liver:	n/a	n/a
3	ARID3A	chr20:14986003-14986310	HepG2	liver:	n/a	n/a
4	ARID3A	chr20:14959886-14961038	HepG2	liver:	n/a	n/a
5	ARID3A	chr20:14971646-14973208	HepG2	liver:	n/a	n/a
6	ARID3A	chr20:14859363-14860384	HepG2	liver:	n/a	n/a
7	ARID3A	chr20:14965101-14967567	HepG2	liver:	n/a	n/a
8	ARID3A	chr20:14936639-14937073	HepG2	liver:	n/a	n/a
9	ATF2	chr20:14841032-14841474	H1-hESC	embryonic stem cell:	n/a	n/a
10	ATF2	chr20:14883084-14883368	GM12878	blood:	n/a	n/a
11	ATF2	chr20:14841040-14841554	H1-hESC	embryonic stem cell:	n/a	n/a
12	ATF2	chr20:14819159-14819726	GM12878	blood:	n/a	n/a
13	ATF2	chr20:14819109-14819739	GM12878	blood:	n/a	n/a
14	ATF3	chr20:14826094-14826569	A549	lung:	n/a	n/a
15	ATF3	chr20:14859536-14860398	A549	lung:	n/a	n/a
16	ATF3	chr20:14966508-14967301	A549	lung:	n/a	n/a
17	ATF3	chr20:14966529-14967363	A549	lung:	n/a	n/a
18	ATF3	chr20:14859595-14860443	A549	lung:	n/a	n/a
19	ATF3	chr20:14965454-14966225	A549	lung:	n/a	n/a
20	BACH1	chr20:14952997-14953174	H1-hESC	embryonic stem cell:	n/a	n/a
21	BACH1	chr20:14841074-14841466	H1-hESC	embryonic stem cell:	n/a	n/a
22	BATF	chr20:14860106-14860399	GM12878	blood:	n/a	chr20:14860263-14860273 chr20:14860262-14860273 chr20:14860267-14860277
23	BATF	chr20:15040971-15041310	GM12878	blood:	n/a	n/a
24	BATF	chr20:14883118-14883412	GM12878	blood:	n/a	n/a
25	BATF	chr20:14833838-14834046	GM12878	blood:	n/a	n/a
26	BATF	chr20:14931782-14932075	GM12878	blood:	n/a	n/a
27	BATF	chr20:14819247-14819774	GM12878	blood:	n/a	chr20:14819441-14819452
28	BATF	chr20:14819170-14819805	GM12878	blood:	n/a	chr20:14819441-14819452
29	BATF	chr20:14860056-14860418	GM12878	blood:	n/a	chr20:14860263-14860273 chr20:14860262-14860273 chr20:14860267-14860277
30	BATF	chr20:14883072-14883470	GM12878	blood:	n/a	n/a
31	BATF	chr20:15041087-15041347	GM12878	blood:	n/a	n/a
32	BATF	chr20:14826296-14826501	GM12878	blood:	n/a	chr20:14826450-14826460
33	BCL11A	chr20:14833756-14834084	GM12878	blood:	n/a	n/a
34	BCL11A	chr20:14883093-14883400	GM12878	blood:	n/a	chr20:14883229-14883238
35	BCL11A	chr20:14819269-14819704	GM12878	blood:	n/a	chr20:14819415-14819424
36	BCL11A	chr20:14859536-14859807	GM12878	blood:	n/a	n/a
37	BCL11A	chr20:14841111-14841474	H1-hESC	embryonic stem cell:	n/a	n/a
38	BCL11A	chr20:14819190-14819731	GM12878	blood:	n/a	chr20:14819415-14819424
39	BCL11A	chr20:14833719-14834115	GM12878	blood:	n/a	n/a
40	BCL11A	chr20:14883096-14883392	GM12878	blood:	n/a	chr20:14883229-14883238
41	BCL3	chr20:14965529-14966338	A549	lung:	n/a	chr20:14966177-14966184
42	BCL3	chr20:14826038-14826561	A549	lung:	n/a	chr20:14826452-14826461
43	BCL3	chr20:14859514-14860394	A549	lung:	n/a	chr20:14860151-14860160 chr20:14860265-14860274
44	BCL3	chr20:14966427-14967324	A549	lung:	n/a	n/a
45	BCL3	chr20:14859331-14860569	A549	lung:	n/a	chr20:14860151-14860160 chr20:14859419-14859428 chr20:14860265-14860274
46	BCL3	chr20:14966411-14967352	A549	lung:	n/a	n/a
47	BCL3	chr20:14825912-14826568	A549	lung:	n/a	chr20:14826452-14826461
48	BCLAF1	chr20:14819282-14819800	GM12878	blood:	n/a	chr20:14819415-14819424
49	BHLHE40	chr20:14833692-14834191	GM12878	blood:	n/a	n/a
50	BHLHE40	chr20:14819263-14819709	GM12878	blood:	n/a	n/a

(count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr20:14904432-14904482	HCT-116	colon:	n/a
2	chr20:14904432-14904482	HCT-116	colon:	n/a
3	chr20:14904432-14904482	SK-N-SH	brain:	n/a
4	chr20:14904432-14904482	HRE	kidney:	n/a
5	chr20:14904432-14904482	K562	blood:	n/a
6	chr20:14904432-14904482	SK-N-SH_RA	brain:	n/a
7	chr20:14904432-14904482	GM12878	blood:	n/a
8	chr20:14904432-14904482	GM12892	blood:	n/a
9	chr20:14904432-14904482	ECC-1	luminal epithelium:	n/a
10	chr20:14904432-14904482	HL-60	blood:	n/a
11	chr20:14904432-14904482	NT2-D1	testis:	n/a
12	chr20:14904432-14904482	NHDF-neo	bronchial:	n/a
13	chr20:14904432-14904482	RPTEC	kidney:	n/a
14	chr20:14904432-14904482	HIPEpiC	eye:	n/a
15	chr20:14904432-14904482	SAEC	small airway:	n/a
16	chr20:14904432-14904482	H1-hESC	embryonic stem cell:	embryo
17	chr20:14904432-14904482	HCM	heart:	n/a
18	chr20:14904432-14904482	Hela-S3	cervix:	n/a
19	chr20:14904432-14904482	GM12891	blood:	n/a
20	chr20:14904432-14904482	LNCaP	prostate:	n/a
21	chr20:14904432-14904482	HRCEpiC	kidney:	n/a
22	chr20:14904432-14904482	HMEC	breast:	n/a
23	chr20:14904432-14904482	PFSK-1	brain:	n/a
24	chr20:14904432-14904482	GM19239	blood:	n/a
25	chr20:14904432-14904482	Caco-2	colon:	n/a
26	chr20:14904432-14904482	HRPEpiC	eye:	n/a
27	chr20:14904432-14904482	Jurkat	blood:	n/a
28	chr20:14904432-14904482	A549	lung:	n/a
29	chr20:14904432-14904482	HPAEpiC	pulmonary alveolar:	n/a
30	chr20:14904432-14904482	PANC-1	pancreas:	n/a
31	chr20:14904432-14904482	PrEC	prostate:	n/a
32	chr20:14904432-14904482	HepG2	liver:	n/a
33	chr20:14904432-14904482	BE2_C	brain:	n/a
34	chr20:14904432-14904482	HEEpiC	esophagus:	n/a
35	chr20:14904432-14904482	GM06990	blood:	n/a
36	chr20:14904432-14904482	AG10803	skin:	n/a
37	chr20:14904432-14904482	MCF-7	breast:	n/a
38	chr20:14904432-14904482	HAEpiC	amniotic membrane:	n/a
39	chr20:14904432-14904482	IMR90	lung:	fetal
40	chr20:14904432-14904482	HEK293	kidney:	embryo
41	chr20:14904432-14904482	HCF	heart:	n/a
42	chr20:14904432-14904482	BJ	skin:	n/a
43	chr20:14904432-14904482	T-47D	breast:	n/a
44	chr20:14904432-14904482	CMK	blood:	n/a
45	chr20:14904432-14904482	NH-A	brain:	n/a
46	chr20:14904432-14904482	HCPEpiC	choroid plexus:	n/a
47	chr20:14904432-14904482	AoSMC	blood vessel:	n/a
48	chr20:14904432-14904482	SKMC	muscle:	n/a
49	chr20:14904432-14904482	Hepatocyte	liver:	n/a
50	chr20:14904432-14904482	HUVEC	blood vessel:	n/a

(count:44 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:14314384..14315320-chr20:14929469..14930347,2	MCF-7	breast:
2	chr20:14913183..14915031-chr20:14915260..14917096,2	MCF-7	breast:
3	chr20:14825814..14826804-chr20:14859521..14860363,2	MCF-7	breast:
4	chr20:14050662..14052329-chr20:14946506..14948938,2	MCF-7	breast:
5	chr20:14856302..14859235-chr20:14930877..14933226,2	MCF-7	breast:
6	chr20:14593902..14596386-chr20:15052997..15054796,2	K562	blood:
7	chr20:14824570..14828041-chr20:14829297..14833669,5	MCF-7	breast:
8	chr20:14898344..14901833-chr20:14901900..14905742,3	MCF-7	breast:
9	chr20:14819967..14822472-chr20:14824610..14827210,3	MCF-7	breast:
10	chr20:14867933..14870632-chr20:14873919..14875816,2	MCF-7	breast:
11	chr20:14898344..14901833-chr20:14901900..14905742,3	MCF-7	breast:
12	chr20:14822570..14824766-chr20:14826157..14827975,2	MCF-7	breast:
13	chr20:14822570..14824766-chr20:14826157..14827975,2	MCF-7	breast:
14	chr20:14835355..14837300-chr20:14840386..14842306,2	MCF-7	breast:
15	chr20:14819967..14822472-chr20:14824610..14827210,3	MCF-7	breast:
16	chr20:14862084..14865220-chr20:14867174..14871364,3	MCF-7	breast:
17	chr20:14895407..14897578-chr20:14900614..14902594,2	MCF-7	breast:
18	chr20:14845184..14847390-chr20:14926741..14929314,2	MCF-7	breast:
19	chr20:14905161..14907169-chr20:14915982..14918854,2	MCF-7	breast:
20	chr20:14825814..14826804-chr20:14859521..14860363,2	MCF-7	breast:
21	chr20:14856302..14859235-chr20:14930877..14933226,2	MCF-7	breast:
22	chr20:14819830..14820468-chr4:11534089..11534643,2	MCF-7	breast:
23	chr20:14925222..14927929-chr20:14930721..14932848,2	MCF-7	breast:
24	chr20:14895407..14897578-chr20:14900614..14902594,2	MCF-7	breast:
25	chr20:14838738..14840500-chr20:14846618..14848612,2	MCF-7	breast:
26	chr20:14857662..14859546-chr20:15214980..15217486,2	MCF-7	breast:
27	chr20:14892181..14894488-chr20:14900218..14901785,2	MCF-7	breast:
28	chr20:14983136..14983867-chr7:139874694..139875444,2	MCF-7	breast:
29	chr20:14837652..14840600-chr20:14844675..14847639,2	MCF-7	breast:
30	chr20:14867933..14870632-chr20:14873919..14875816,2	MCF-7	breast:
31	chr20:14859239..14863091-chr20:15040405..15044044,4	MCF-7	breast:
32	chr20:14824570..14828041-chr20:14829297..14833669,5	MCF-7	breast:
33	chr20:14861831..14864729-chr20:14900336..14902240,2	MCF-7	breast:
34	chr20:14859239..14863091-chr20:15040405..15044044,4	MCF-7	breast:
35	chr20:14901786..14904742-chr20:14908050..14909865,2	MCF-7	breast:
36	chr20:14925222..14927929-chr20:14930721..14932848,2	MCF-7	breast:
37	chr20:14901786..14904742-chr20:14908050..14909865,2	MCF-7	breast:
38	chr20:14845184..14847390-chr20:14926741..14929314,2	MCF-7	breast:
39	chr20:14861831..14864729-chr20:14900336..14902240,2	MCF-7	breast:
40	chr20:14838738..14840500-chr20:14846618..14848612,2	MCF-7	breast:
41	chr20:14835355..14837300-chr20:14840386..14842306,2	MCF-7	breast:
42	chr20:14837652..14840600-chr20:14844675..14847639,2	MCF-7	breast:
43	chr20:14862084..14865220-chr20:14867174..14871364,3	MCF-7	breast:
44	chr20:14892181..14894488-chr20:14900218..14901785,2	MCF-7	breast:

(count:25 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FLRT3-1	chr20:14864899-14865240	ENSG00000235914.1
2	lnc-FLRT3-1	chr20:14910021-14910154	NONHSAT078722
3	lnc-C20orf7-3	chr20:14830550-14830649	NONHSAT078714
4	lnc-FLRT3-1	chr20:14864898-14865240	NONHSAT078722
5	lnc-C20orf7-3	chr20:14830550-14831152	NONHSAT078716
6	lnc-FLRT3-1	chr20:14868742-14868950	ENSG00000235914.1
7	lnc-FLRT3-1	chr20:14864899-14865240	NR_037841
8	lnc-FLRT3-1	chr20:14885587-14886675	ENSG00000235914.1
9	lnc-FLRT3-1	chr20:14864896-14865240	NONHSAT078721
10	lnc-FLRT3-2	chr20:14914489-14914588	ENSG00000237832.1
11	lnc-FLRT3-4	chr20:14816742-14816950	ucscGeneNc_uc002woy_1
12	lnc-FLRT3-1	chr20:14910021-14910132	ENSG00000235914.1
13	lnc-FLRT3-1	chr20:14868742-14868950	NR_037841
14	lnc-FLRT3-2	chr20:14915884-14916009	ENSG00000237832.1
15	lnc-FLRT3-2	chr20:14915576-14915720	ENSG00000237832.1
16	lnc-FLRT3-1	chr20:14885587-14886675	NR_072988
17	lnc-FLRT3-4	chr20:14858021-14858161	ucscGeneNc_uc002woy_1
18	lnc-FLRT3-1	chr20:14910021-14910164	NR_110318
19	lnc-FLRT3-1	chr20:14910021-14910161	ENSG00000235914.1
20	lnc-FLRT3-1	chr20:14864899-14865240	NR_110318
21	lnc-FLRT3-1	chr20:14910021-14910164	NR_072988
22	lnc-C20orf7-3	chr20:14868789-14869314	NONHSAT078714
23	lnc-FLRT3-1	chr20:14868742-14868950	NONHSAT078721
24	lnc-FLRT3-1	chr20:14910021-14910142	NONHSAT078721
25	lnc-FLRT3-1	chr20:14910021-14910164	NR_037841

No data

Variant related genes	Relation type
MACROD2-AS1	TF binding region
ENSG00000237832	TF binding region
RNU6-1159P	TF binding region
RNU6-115P	TF binding region
MACROD2-AS1	CpG island
ENSG00000237832	CpG island
RNU6-1159P	CpG island
RNU6-115P	CpG island
ENSG00000237832	chromatin interactions

Extended variants
information (count: 8875 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:8875 , 50 per page) page: 1 2 3 4 5 6 7 ... 178

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs572574684	chr20:14816752-14816753	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs13041319	chr20:14816791-14816792	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs568886489	chr20:14816800-14816801	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs55634871	chr20:14816805-14816806	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs577011804	chr20:14816814-14816815	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs544486927	chr20:14816827-14816828	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs13041054	chr20:14816833-14816834	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs368663971	chr20:14816857-14816858	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs186417263	chr20:14816868-14816869	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs13041484	chr20:14816879-14816880	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs142741463	chr20:14816883-14816884	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs13041492	chr20:14816884-14816885	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs181539018	chr20:14816889-14816890	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs527773342	chr20:14816901-14816902	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs568359326	chr20:14818004-14818005	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs139817293	chr20:14818020-14818021	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs114862398	chr20:14818103-14818104	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs547731982	chr20:14818135-14818136	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs187680523	chr20:14818160-14818161	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs77290690	chr20:14818161-14818162	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs192382425	chr20:14818185-14818186	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs439451	chr20:14818197-14818198	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs570425391	chr20:14818200-14818201	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs368744484	chr20:14818247-14818248	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs143114636	chr20:14818253-14818254	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs184381947	chr20:14818256-14818257	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs574716317	chr20:14818335-14818336	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs114699995	chr20:14818339-14818340	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs574736919	chr20:14818374-14818375	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs146701458	chr20:14818402-14818403	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs375408248	chr20:14818409-14818410	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs572312444	chr20:14818423-14818424	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs545829292	chr20:14818460-14818461	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs564526238	chr20:14818466-14818467	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs6042946	chr20:14818495-14818496	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs531676252	chr20:14818502-14818503	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs543544580	chr20:14818516-14818517	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs187224177	chr20:14818536-14818537	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs16995072	chr20:14818538-14818539	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs6110445	chr20:14818547-14818548	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs566196763	chr20:14818566-14818567	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs546001634	chr20:14818584-14818585	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs13041860	chr20:14818585-14818586	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs553686463	chr20:14818586-14818587	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs142423143	chr20:14818587-14818588	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs577203838	chr20:14818610-14818611	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs551854635	chr20:14818620-14818621	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs184862560	chr20:14818692-14818693	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs537920996	chr20:14818694-14818695	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs199589435	chr20:14818723-14818724	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:73)

Disease	PMID	Source
Breast cancer	16397240	CNVD
abortions and stillbirths	19751515	CNVD
Wilms tumour	21544195	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	16272173	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Glaucoma	21310917	CNVD
Alagille syndrome	22470819	CNVD
Lung cancer	16773561	CNVD
Renal cell carcinoma	18765545	CNVD
Alagille syndrome	17576883	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
Prostate cancer	18632612	CNVD
Ewing''s sarcoma	18628472	CNVD
Glioblastoma multiforme	18628472	CNVD
Leukemia	18628472	CNVD
Myelofibrosis	22110671	CNVD
Kabuki syndrome	21720541	CNVD
Glioblastoma multiforme	22286061	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Neurocytoma	17123091	CNVD
Glioblastoma multiforme	21138945	CNVD
Cancer	20164919	CNVD
Multiple sclerosis	20663923	CNVD
Schizophrenia	20663923	CNVD
brain infarct	20663923	CNVD
Breast cancer	22522925	CNVD
Breast cancer	17142309	CNVD
Cancer	20164920	CNVD
Schizophrenia	23813976	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Autism	20531469	CNVD
Breast cancer	21364760	CNVD
Williams Syndrome	20824207	CNVD
Melanoma	17363583	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Schizophrenia	20967226	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Cancer	21272361	CNVD
Schizophrenia	19805367	CNVD

Chromatin state (count:1313 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:14818000-14819400	Enhancers	GM12878-XiMat	blood
2	chr20:14818400-14820200	Enhancers	Hela-S3	cervix
3	chr20:14819200-14819600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr20:14819200-14820400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr20:14819400-14819800	Enhancers	NHDF-Ad	bronchial
6	chr20:14819400-14820000	Flanking Active TSS	GM12878-XiMat	blood
7	chr20:14819400-14820200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr20:14819400-14820200	Enhancers	Fetal Kidney	kidney
9	chr20:14819400-14820200	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr20:14819400-14820400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr20:14819600-14820000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr20:14819600-14820000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr20:14819600-14820200	Enhancers	Psoas Muscle	Psoas
14	chr20:14819600-14820200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr20:14820000-14820200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr20:14820000-14820400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr20:14820000-14820400	Enhancers	GM12878-XiMat	blood
18	chr20:14820200-14825600	Weak transcription	Fetal Kidney	kidney
19	chr20:14820200-14825600	Weak transcription	Hela-S3	cervix
20	chr20:14820800-14825400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr20:14821800-14822800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr20:14824400-14824800	Enhancers	Esophagus	oesophagus
23	chr20:14824600-14827000	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr20:14825400-14825800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr20:14825400-14826200	Enhancers	A549	lung
26	chr20:14825400-14826400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr20:14825400-14827000	Enhancers	HMEC	breast
28	chr20:14825400-14827000	Enhancers	NHEK	skin
29	chr20:14825400-14827200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr20:14825600-14826200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr20:14825600-14826600	Enhancers	Fetal Kidney	kidney
32	chr20:14825600-14826800	Enhancers	Hela-S3	cervix
33	chr20:14825800-14845600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr20:14826200-14826800	Flanking Active TSS	A549	lung
35	chr20:14826400-14826800	Enhancers	Muscle Satellite Cultured Cells	--
36	chr20:14826800-14827000	Enhancers	A549	lung
37	chr20:14827000-14828600	Weak transcription	A549	lung
38	chr20:14828000-14829000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr20:14828200-14829200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr20:14828400-14828600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr20:14828400-14828800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr20:14828400-14829000	Enhancers	Brain Germinal Matrix	brain
43	chr20:14828600-14828800	Enhancers	A549	lung
44	chr20:14828600-14829600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr20:14828800-14830800	Weak transcription	A549	lung
46	chr20:14829000-14829400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr20:14829200-14829600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr20:14829400-14829800	Enhancers	Pancreas	Pancrea
49	chr20:14829400-14830000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr20:14829600-14829800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links