Variant report

Variant nsv1059551
Chromosome Location chr20:52644770-52658639
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:52566400-52644800 Weak transcription Gastric stomach
2 chr20:52634800-52645400 Weak transcription Fetal Lung lung
3 chr20:52641400-52646000 Active TSS Brain Anterior Caudate brain
4 chr20:52641600-52646000 Active TSS Brain Inferior Temporal Lobe brain
5 chr20:52641600-52676400 Weak transcription Stomach Mucosa stomach
6 chr20:52641800-52646000 Active TSS Brain Substantia Nigra brain
7 chr20:52642200-52645400 Weak transcription Brain Germinal Matrix brain
8 chr20:52642200-52645600 Active TSS Brain Dorsolateral Prefrontal Cortex brain
9 chr20:52642200-52645800 Active TSS Brain Angular Gyrus brain
10 chr20:52642400-52644800 Weak transcription Fetal Brain Female brain
11 chr20:52642400-52646000 Active TSS Brain Hippocampus Middle brain
12 chr20:52642600-52645400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
13 chr20:52642600-52645800 Active TSS Brain Cingulate Gyrus brain
14 chr20:52643200-52645400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
15 chr20:52643200-52645600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
16 chr20:52643400-52645200 Weak transcription NHDF-Ad bronchial
17 chr20:52643600-52645000 Active TSS HSMMtube muscle
18 chr20:52643800-52645000 Weak transcription Fetal Brain Male brain
19 chr20:52643800-52646000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
20 chr20:52644200-52644800 Weak transcription Fetal Stomach stomach
21 chr20:52644400-52644800 Enhancers Rectal Mucosa Donor 29 rectum
22 chr20:52644600-52644800 Enhancers Fetal Kidney kidney
23 chr20:52644600-52644800 ZNF genes & repeats Sigmoid Colon Sigmoid Colon
24 chr20:52644600-52645600 Genic enhancers Rectal Mucosa Donor 31 rectum
25 chr20:52644800-52645200 Genic enhancers Fetal Stomach stomach
26 chr20:52644800-52645200 Bivalent Enhancer Sigmoid Colon Sigmoid Colon
27 chr20:52644800-52645600 Enhancers Fetal Brain Female brain
28 chr20:52644800-52645600 Enhancers Fetal Muscle Leg muscle
29 chr20:52644800-52646000 Strong transcription Gastric stomach
30 chr20:52644800-52666400 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr20:52645000-52645200 Enhancers Fetal Brain Male brain
32 chr20:52645000-52645200 Flanking Active TSS HSMMtube muscle
33 chr20:52645000-52646400 Enhancers Placenta Placenta
34 chr20:52645200-52645600 Enhancers HSMMtube muscle
35 chr20:52645200-52645600 Enhancers K562 blood
36 chr20:52645200-52646000 Enhancers Fetal Stomach stomach
37 chr20:52645200-52646400 Enhancers NHDF-Ad bronchial
38 chr20:52645200-52682200 Weak transcription Sigmoid Colon Sigmoid Colon
39 chr20:52645400-52645800 Enhancers Brain Germinal Matrix brain
40 chr20:52645400-52646000 Enhancers Fetal Lung lung
41 chr20:52645400-52646400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr20:52645600-52645800 Flanking Active TSS Brain Dorsolateral Prefrontal Cortex brain
43 chr20:52645600-52645800 Flanking Active TSS HSMMtube muscle
44 chr20:52645600-52646000 Bivalent Enhancer Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr20:52645600-52646000 Strong transcription Rectal Mucosa Donor 31 rectum
46 chr20:52645600-52646400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
47 chr20:52645800-52646000 Flanking Active TSS Brain Angular Gyrus brain
48 chr20:52645800-52646000 Enhancers HSMMtube muscle
49 chr20:52645800-52647200 Enhancers Brain Cingulate Gyrus brain
50 chr20:52646000-52646200 Active TSS Brain Angular Gyrus brain

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