Variant report

Variant	nsv1059986
Chromosome Location	chr19:24456812-24596738
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:121483249..121485033-chr19:24456855..24458356,4	K562	blood:
2	chr1:121483249..121485033-chr19:24456836..24458356,4	K562	blood:

Extended variants
information (count: 10446 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:10446 , 50 per page) page: 1 2 3 4 5 6 7 ... 209

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs566341505	chr19:24456836-24456837	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs527538785	chr19:24456863-24456864	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs531249959	chr19:24456888-24456889	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs570767182	chr19:24456894-24456895	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs538654776	chr19:24456934-24456935	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs374393185	chr19:24456965-24456966	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs557353992	chr19:24456971-24456972	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs569237312	chr19:24456983-24456984	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs536759103	chr19:24456985-24456986	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs183748735	chr19:24456990-24456991	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs573478755	chr19:24456994-24456995	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs540887857	chr19:24457019-24457020	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs73015279	chr19:24457025-24457026	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs112694085	chr19:24457041-24457042	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs577512589	chr19:24457043-24457044	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs372309448	chr19:24457044-24457045	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs543839675	chr19:24457066-24457067	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs149916898	chr19:24457088-24457089	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs574158117	chr19:24457092-24457093	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs77022205	chr19:24457118-24457119	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs2255598	chr19:24457120-24457121	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs62114083	chr19:24457127-24457128	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs146472775	chr19:24457128-24457129	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs552397599	chr19:24457139-24457140	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs549767708	chr19:24457141-24457142	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs558402648	chr19:24457159-24457160	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs531668269	chr19:24457160-24457161	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs546402324	chr19:24457165-24457166	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs550667758	chr19:24457168-24457169	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs569296850	chr19:24457184-24457185	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs573462460	chr19:24457185-24457186	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs141692143	chr19:24457186-24457187	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs115302867	chr19:24457192-24457193	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs112058579	chr19:24457194-24457195	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs534388258	chr19:24457211-24457212	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs559132949	chr19:24457222-24457223	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs577450676	chr19:24457223-24457224	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs188134445	chr19:24457228-24457229	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs528508200	chr19:24457257-24457258	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs574106594	chr19:24457275-24457276	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs180672948	chr19:24457276-24457277	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs559814739	chr19:24457282-24457283	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs571838676	chr19:24457287-24457288	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs186582897	chr19:24457293-24457294	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs191030061	chr19:24457299-24457300	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs182065837	chr19:24457314-24457315	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs144848977	chr19:24457326-24457327	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs562829755	chr19:24457348-24457349	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs530108177	chr19:24457381-24457382	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs377263400	chr19:24457395-24457396	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
Lung cancer	18438408	CNVD

Chromatin state (count:274 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24455800-24462600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:24457000-24458600	ZNF genes & repeats	Liver	Liver
3	chr19:24457600-24458600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:24468000-24473400	ZNF genes & repeats	Liver	Liver
5	chr19:24468400-24496800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr19:24468600-24477400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr19:24469200-24504400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr19:24472000-24475000	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr19:24472800-24473200	Active TSS	Aorta	Aorta
10	chr19:24473200-24474200	Weak transcription	Aorta	Aorta
11	chr19:24474000-24474800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
12	chr19:24474200-24474400	ZNF genes & repeats	Brain Substantia Nigra	brain
13	chr19:24474200-24474400	ZNF genes & repeats	Dnd41	blood
14	chr19:24474200-24474400	ZNF genes & repeats	Osteobl	bone
15	chr19:24474200-24474600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
16	chr19:24474200-24474600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
17	chr19:24474200-24474800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
18	chr19:24474200-24474800	ZNF genes & repeats	Primary T cells from cord blood	blood
19	chr19:24474200-24474800	Active TSS	Aorta	Aorta
20	chr19:24474200-24474800	ZNF genes & repeats	NH-A	brain
21	chr19:24474200-24475000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
22	chr19:24474400-24474800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr19:24474600-24474800	ZNF genes & repeats	HepG2	liver
24	chr19:24474600-24474800	ZNF genes & repeats	HUVEC	blood vessel
25	chr19:24474600-24474800	ZNF genes & repeats	K562	blood
26	chr19:24475000-24475600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr19:24475600-24504400	ZNF genes & repeats	Liver	Liver
28	chr19:24478600-24484600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr19:24480000-24493400	ZNF genes & repeats	Adipose Nuclei	Adipose
30	chr19:24480800-24481400	Active TSS	Aorta	Aorta
31	chr19:24481600-24494000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
32	chr19:24484400-24485000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr19:24484800-24486000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
34	chr19:24486400-24487200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
35	chr19:24486400-24490800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
36	chr19:24491800-24492400	Active TSS	Aorta	Aorta
37	chr19:24495600-24497600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
38	chr19:24499000-24502200	ZNF genes & repeats	Adipose Nuclei	Adipose
39	chr19:24499200-24502000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
40	chr19:24500800-24501200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr19:24503800-24512000	ZNF genes & repeats	Adipose Nuclei	Adipose
42	chr19:24505400-24505800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
43	chr19:24507800-24577200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr19:24508000-24573400	ZNF genes & repeats	Liver	Liver
45	chr19:24508800-24569000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr19:24509200-24570800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
47	chr19:24509400-24510200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
48	chr19:24513000-24571800	ZNF genes & repeats	Adipose Nuclei	Adipose
49	chr19:24513400-24527000	ZNF genes & repeats	Dnd41	blood
50	chr19:24513600-24530800	ZNF genes & repeats	Psoas Muscle	Psoas

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