Variant report

Variant	nsv1060092
Chromosome Location	chr19:24503760-24596738
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7550 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:7550 , 50 per page) page: 1 2 3 4 5 6 7 ... 151

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs114580417	chr19:24503785-24503786	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs187499149	chr19:24503799-24503800	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs368332753	chr19:24503802-24503803	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs143412148	chr19:24503809-24503810	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs573970318	chr19:24503825-24503826	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs541452093	chr19:24503849-24503850	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs559571578	chr19:24503861-24503862	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs11672977	chr19:24503864-24503865	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs545189327	chr19:24503867-24503868	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs563550245	chr19:24503906-24503907	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs535911110	chr19:24503911-24503912	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs549427141	chr19:24503935-24503936	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs562815835	chr19:24503938-24503939	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs567982995	chr19:24503946-24503947	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs148188283	chr19:24503971-24503972	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs4986239	chr19:24503985-24503986	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs369135024	chr19:24503986-24503987	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs141501210	chr19:24504006-24504007	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs145260675	chr19:24504045-24504046	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs192737904	chr19:24504055-24504056	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs566707554	chr19:24504095-24504096	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs536519385	chr19:24504102-24504103	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs184739523	chr19:24504103-24504104	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs573119842	chr19:24504107-24504108	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs534705640	chr19:24504118-24504119	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs553374101	chr19:24504151-24504152	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs548962580	chr19:24504153-24504154	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs1852401	chr19:24504189-24504190	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs189458597	chr19:24504195-24504196	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs116588672	chr19:24504197-24504198	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs137914922	chr19:24504199-24504200	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs543233671	chr19:24504228-24504229	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs561417837	chr19:24504229-24504230	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs182057884	chr19:24504236-24504237	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs555590810	chr19:24504245-24504246	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs564875168	chr19:24504249-24504250	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs184474130	chr19:24504262-24504263	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs538319480	chr19:24504271-24504272	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs142457476	chr19:24504278-24504279	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs150561247	chr19:24504284-24504285	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs536040005	chr19:24504303-24504304	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs139589633	chr19:24504318-24504319	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs190354055	chr19:24504337-24504338	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs79194756	chr19:24504338-24504339	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs553046250	chr19:24504340-24504341	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs73014582	chr19:24504363-24504364	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs577628930	chr19:24504364-24504365	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs149319365	chr19:24504370-24504371	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs181176555	chr19:24504387-24504388	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs186618936	chr19:24504394-24504395	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
Lung cancer	18438408	CNVD

Chromatin state (count:236 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24469200-24504400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:24475600-24504400	ZNF genes & repeats	Liver	Liver
3	chr19:24503800-24512000	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr19:24505400-24505800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:24507800-24577200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr19:24508000-24573400	ZNF genes & repeats	Liver	Liver
7	chr19:24508800-24569000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr19:24509200-24570800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chr19:24509400-24510200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
10	chr19:24513000-24571800	ZNF genes & repeats	Adipose Nuclei	Adipose
11	chr19:24513400-24527000	ZNF genes & repeats	Dnd41	blood
12	chr19:24513600-24530800	ZNF genes & repeats	Psoas Muscle	Psoas
13	chr19:24513800-24518200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
14	chr19:24514400-24519400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
15	chr19:24515400-24516200	Active TSS	Right Atrium	heart
16	chr19:24515400-24517200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
17	chr19:24515400-24519400	ZNF genes & repeats	Brain Hippocampus Middle	brain
18	chr19:24517400-24519600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
19	chr19:24517800-24520200	Active TSS	Aorta	Aorta
20	chr19:24520200-24522200	Weak transcription	Aorta	Aorta
21	chr19:24521200-24522200	Active TSS	Fetal Heart	heart
22	chr19:24521200-24526600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
23	chr19:24521400-24521600	ZNF genes & repeats	Fetal Lung	lung
24	chr19:24522000-24576600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
25	chr19:24522200-24523800	Active TSS	Aorta	Aorta
26	chr19:24523000-24523200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr19:24523200-24526400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
28	chr19:24523800-24524200	Weak transcription	Aorta	Aorta
29	chr19:24524000-24526600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
30	chr19:24524600-24526400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
31	chr19:24524800-24526600	ZNF genes & repeats	Colon Smooth Muscle	Colon
32	chr19:24524800-24529600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr19:24524800-24530400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
34	chr19:24525200-24526400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
35	chr19:24525200-24542000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
36	chr19:24525400-24577200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
37	chr19:24525600-24526800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
38	chr19:24525600-24526800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
39	chr19:24525600-24526800	ZNF genes & repeats	HepG2	liver
40	chr19:24525800-24526000	Enhancers	Hela-S3	cervix
41	chr19:24525800-24526400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
42	chr19:24525800-24526400	ZNF genes & repeats	Brain Angular Gyrus	brain
43	chr19:24525800-24526600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
44	chr19:24525800-24526800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr19:24526000-24526200	Flanking Bivalent TSS/Enh	ES-WA7 Cell Line	embryonic stem cell
46	chr19:24526000-24526200	ZNF genes & repeats	Esophagus	oesophagus
47	chr19:24526000-24526200	Active TSS	Right Atrium	heart
48	chr19:24526000-24526200	Flanking Bivalent TSS/Enh	NHLF	lung
49	chr19:24526000-24526400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
50	chr19:24526000-24526400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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