Variant report
Variant | nsv1060247 |
---|---|
Chromosome Location | chr20:29860167-29969913 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:409)
- CpG islands (count:672)
- Chromatin interactive region (count:14)
- LncRNA region (count:11)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr20:29901133-29901495 | HepG2 | liver: | n/a | n/a |
2 | ATF1 | chr20:29901261-29901460 | K562 | blood: | n/a | n/a |
3 | CEBPB | chr20:29891404-29891489 | IMR90 | lung: | n/a | chr20:29891449-29891460 |
4 | CEBPB | chr20:29891290-29891604 | HepG2 | liver: | n/a | chr20:29891449-29891460 |
5 | CEBPB | chr20:29886446-29886770 | HepG2 | liver: | n/a | chr20:29886585-29886596 |
6 | CEBPB | chr20:29886470-29886721 | A549 | lung: | n/a | chr20:29886585-29886596 |
7 | CEBPB | chr20:29901179-29901489 | IMR90 | lung: | n/a | n/a |
8 | CEBPB | chr20:29886588-29886598 | H1-hESC | embryonic stem cell: | n/a | n/a |
9 | CEBPB | chr20:29926865-29926997 | HepG2 | liver: | n/a | n/a |
10 | CEBPB | chr20:29901178-29901527 | HepG2 | liver: | n/a | n/a |
11 | CEBPB | chr20:29939648-29939720 | HepG2 | liver: | n/a | chr20:29939667-29939678 |
12 | CEBPB | chr20:29929046-29929296 | Hela-S3 | cervix: | n/a | n/a |
13 | CEBPB | chr20:29929475-29929483 | K562 | blood: | n/a | n/a |
14 | CEBPB | chr20:29901113-29901610 | MCF-7 | breast: | n/a | n/a |
15 | CEBPB | chr20:29930995-29931186 | HepG2 | liver: | n/a | chr20:29931087-29931098 |
16 | CHD2 | chr20:29952144-29952438 | HepG2 | liver: | n/a | n/a |
17 | CHD2 | chr20:29952083-29952448 | K562 | blood: | n/a | n/a |
18 | CTCF | chr20:29901300-29901450 | HVMF | connective: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
19 | CTCF | chr20:29901280-29901430 | GM12878 | blood: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
20 | CTCF | chr20:29901269-29901510 | ProgFib | skin: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
21 | CTCF | chr20:29901185-29901436 | H1-hESC | embryonic stem cell: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
22 | CTCF | chr20:29901320-29901470 | AG09319 | gingival: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
23 | CTCF | chr20:29901252-29901420 | GM20000 | blood: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
24 | CTCF | chr20:29901300-29901450 | HPAF | blood vessel: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
25 | CTCF | chr20:29941100-29941250 | HepG2 | liver: | n/a | n/a |
26 | CTCF | chr20:29900986-29901031 | GM19239 | blood: | n/a | n/a |
27 | CTCF | chr20:29900991-29901074 | GM19240 | blood: | n/a | n/a |
28 | CTCF | chr20:29901020-29901170 | Caco-2 | colon: | n/a | n/a |
29 | CTCF | chr20:29901260-29901410 | HRPEpiC | eye: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
30 | CTCF | chr20:29901260-29901410 | WERI-Rb-1 | eye: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
31 | CTCF | chr20:29901300-29901450 | AoAF | blood vessel: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
32 | CTCF | chr20:29900700-29900850 | HCT-116 | colon: | n/a | n/a |
33 | CTCF | chr20:29901155-29901484 | T-47D | breast: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
34 | CTCF | chr20:29901280-29901430 | GM12874 | blood: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
35 | CTCF | chr20:29901060-29901210 | HMEC | breast: | n/a | n/a |
36 | CTCF | chr20:29900936-29901684 | HCT-116 | colon: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
37 | CTCF | chr20:29860380-29860530 | HEK293 | kidney: | n/a | n/a |
38 | CTCF | chr20:29900940-29901090 | GM12866 | blood: | n/a | n/a |
39 | CTCF | chr20:29901280-29901430 | GM12868 | blood: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
40 | CTCF | chr20:29900986-29901043 | GM12892 | blood: | n/a | n/a |
41 | CTCF | chr20:29900960-29901110 | WERI-Rb-1 | eye: | n/a | n/a |
42 | CTCF | chr20:29901471-29901498 | GM19239 | blood: | n/a | n/a |
43 | CTCF | chr20:29900780-29901549 | K562 | blood: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
44 | CTCF | chr20:29901260-29901410 | GM12865 | blood: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
45 | CTCF | chr20:29865700-29865850 | HepG2 | liver: | n/a | n/a |
46 | CTCF | chr20:29901100-29901250 | HA-sp | spinal cord: | n/a | n/a |
47 | CTCF | chr20:29901220-29901370 | HCM | heart: | n/a | chr20:29901332-29901353 chr20:29901350-29901368 |
48 | CTCF | chr20:29901020-29901170 | GM12869 | blood: | n/a | n/a |
49 | CTCF | chr20:29901300-29901450 | MCF-7 | breast: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
50 | CTCF | chr20:29901200-29901350 | WI-38 | lung: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:29955259-29955309 | Hela-S3 | cervix: | n/a |
2 | chr20:29955259-29955309 | Hela-S3 | cervix: | n/a |
3 | chr20:29956585-29956635 | Jurkat | blood: | n/a |
4 | chr20:29956330-29956380 | SK-N-MC | brain: | n/a |
5 | chr20:29896928-29896978 | PrEC | prostate: | n/a |
6 | chr20:29956028-29956078 | H1-hESC | embryonic stem cell: | embryo |
7 | chr20:29956062-29956112 | AoSMC | blood vessel: | n/a |
8 | chr20:29960982-29961032 | NHDF-neo | bronchial: | n/a |
9 | chr20:29892486-29892536 | Hela-S3 | cervix: | n/a |
10 | chr20:29960982-29961032 | AG10803 | skin: | n/a |
11 | chr20:29956585-29956635 | SK-N-MC | brain: | n/a |
12 | chr20:29956330-29956380 | HPAEpiC | pulmonary alveolar: | n/a |
13 | chr20:29892486-29892536 | Jurkat | blood: | n/a |
14 | chr20:29896479-29896529 | HEEpiC | esophagus: | n/a |
15 | chr20:29896479-29896529 | AoSMC | blood vessel: | n/a |
16 | chr20:29896456-29896506 | HUVEC | blood vessel: | n/a |
17 | chr20:29896456-29896506 | MCF10A-Er-Src | breast: | n/a |
18 | chr20:29896456-29896506 | MCF-7 | breast: | n/a |
19 | chr20:29956585-29956635 | HL-60 | blood: | n/a |
20 | chr20:29892486-29892536 | HIPEpiC | eye: | n/a |
21 | chr20:29956330-29956380 | PFSK-1 | brain: | n/a |
22 | chr20:29892486-29892536 | AG04449 | skin: | fetal |
23 | chr20:29956028-29956078 | AG09309 | skin: | n/a |
24 | chr20:29896928-29896978 | GM12878 | blood: | n/a |
25 | chr20:29956330-29956380 | HCPEpiC | choroid plexus: | n/a |
26 | chr20:29965177-29965227 | PrEC | prostate: | n/a |
27 | chr20:29960982-29961032 | AG04449 | skin: | fetal |
28 | chr20:29956585-29956635 | HAEpiC | amniotic membrane: | n/a |
29 | chr20:29956028-29956078 | NT2-D1 | testis: | n/a |
30 | chr20:29956062-29956112 | ProgFib | skin: | n/a |
31 | chr20:29956585-29956635 | AG09319 | gingival: | n/a |
32 | chr20:29896456-29896506 | HCT-116 | colon: | n/a |
33 | chr20:29896456-29896506 | AG09319 | gingival: | n/a |
34 | chr20:29892486-29892536 | MCF-7 | breast: | n/a |
35 | chr20:29956330-29956380 | HAEpiC | amniotic membrane: | n/a |
36 | chr20:29956062-29956112 | ovcar-3 | ovarian: | n/a |
37 | chr20:29956585-29956635 | SKMC | muscle: | n/a |
38 | chr20:29960982-29961032 | HEEpiC | esophagus: | n/a |
39 | chr20:29896456-29896506 | K562 | blood: | n/a |
40 | chr20:29896928-29896978 | Hela-S3 | cervix: | n/a |
41 | chr20:29896456-29896506 | NHDF-neo | bronchial: | n/a |
42 | chr20:29896456-29896506 | AG10803 | skin: | n/a |
43 | chr20:29896479-29896529 | Hela-S3 | cervix: | n/a |
44 | chr20:29896928-29896978 | BJ | skin: | n/a |
45 | chr20:29892486-29892536 | GM12878 | blood: | n/a |
46 | chr20:29965177-29965227 | Hela-S3 | cervix: | n/a |
47 | chr20:29960982-29961032 | ovcar-3 | ovarian: | n/a |
48 | chr20:29956330-29956380 | SK-N-SH | brain: | n/a |
49 | chr20:29956062-29956112 | HEEpiC | esophagus: | n/a |
50 | chr20:29965177-29965227 | SK-N-MC | brain: | n/a |
(count:14 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:29933564..29935935-chr20:29935958..29938008,2 | MCF-7 | breast: | |
2 | chr20:29940769..29942399-chr20:29945457..29948097,2 | MCF-7 | breast: | |
3 | chr20:29874751..29877240-chr20:29903779..29906129,2 | K562 | blood: | |
4 | chr20:29874751..29877240-chr20:29903779..29906129,2 | K562 | blood: | |
5 | chr20:29933564..29935935-chr20:29935958..29938008,2 | MCF-7 | breast: | |
6 | chr20:29900644..29901274-chr20:30041865..30042847,4 | MCF-7 | breast: | |
7 | chr20:29905971..29908391-chr20:29910613..29913391,2 | K562 | blood: | |
8 | chr20:29900827..29901742-chr20:30090593..30091579,4 | MCF-7 | breast: | |
9 | chr20:29955069..29955719-chr20:29963915..29964847,2 | MCF-7 | breast: | |
10 | chr20:29940769..29942399-chr20:29945457..29948097,2 | MCF-7 | breast: | |
11 | chr20:29900754..29901422-chr20:30042008..30042651,2 | MCF-7 | breast: | |
12 | chr20:29960399..29962900-chr20:29964371..29965877,2 | MCF-7 | breast: | |
13 | chr20:29905971..29908391-chr20:29910613..29913391,2 | K562 | blood: | |
14 | chr20:29960399..29962900-chr20:29964371..29965877,2 | MCF-7 | breast: |
(count:11 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-DEFB119-2 | chr20:29929174-29929962 | NONHSAT079285 |
2 | lnc-DEFB119-1 | chr20:29966155-29966194 | NR_073153 |
3 | lnc-DEFB119-2 | chr20:29930249-29931017 | NONHSAT079285 |
4 | lnc-DEFB119-2 | chr20:29931121-29931202 | NONHSAT079285 |
5 | lnc-DEFB116-4 | chr20:29899106-29899362 | NONHSAT079284 |
6 | lnc-DEFB119-1 | chr20:29964966-29965165 | NONHSAT079290 |
7 | lnc-DEFB119-1 | chr20:29966155-29966194 | NONHSAT079289 |
8 | lnc-DEFB119-1 | chr20:29964966-29965242 | NR_073153 |
9 | lnc-DEFB119-1 | chr20:29964966-29965242 | NONHSAT079289 |
10 | lnc-DEFB116-4 | chr20:29899691-29899765 | NONHSAT079284 |
11 | lnc-DEFB119-2 | chr20:29931511-29932274 | NONHSAT079285 |
No data |
No data |
Variant related genes | Relation type |
---|---|
HAUS6P2 | TF binding region |
RPL31P3 | TF binding region |
DEFB116 | TF binding region |
ENSG00000212134 | TF binding region |
DEFB118 | TF binding region |
RNA5SP480 | TF binding region |
ENSG00000224628 | TF binding region |
DKKL1P1 | TF binding region |
DEFB117 | TF binding region |
HAUS6P2 | CpG island |
RPL31P3 | CpG island |
DEFB116 | CpG island |
ENSG00000212134 | CpG island |
DEFB118 | CpG island |
RNA5SP480 | CpG island |
ENSG00000224628 | CpG island |
DKKL1P1 | CpG island |
DEFB117 | CpG island |
ENSG00000212134 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs6119722 | chr20:29860167-29860168 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
2 | rs115281318 | chr20:29860233-29860234 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
3 | rs546029936 | chr20:29860260-29860261 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
4 | rs562626384 | chr20:29860266-29860267 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
5 | rs576301227 | chr20:29860269-29860270 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
6 | rs541988814 | chr20:29860297-29860298 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
7 | rs1884743 | chr20:29860298-29860299 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
8 | rs527311809 | chr20:29860301-29860302 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
9 | rs547051612 | chr20:29860305-29860306 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
10 | rs11905764 | chr20:29860306-29860307 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
11 | rs116536446 | chr20:29860322-29860323 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
12 | rs186533074 | chr20:29860333-29860334 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
13 | rs569147147 | chr20:29860366-29860367 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
14 | rs531771875 | chr20:29860372-29860373 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
15 | rs528804075 | chr20:29860393-29860394 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
16 | rs370763530 | chr20:29860397-29860398 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
17 | rs188176234 | chr20:29860425-29860426 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
18 | rs568432736 | chr20:29860483-29860484 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
19 | rs112289578 | chr20:29860513-29860514 | ZNF genes & repeats | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
20 | rs536279664 | chr20:29860609-29860610 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
21 | rs553840428 | chr20:29860618-29860619 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
22 | rs180931059 | chr20:29860649-29860650 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
23 | rs570763357 | chr20:29860675-29860676 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
24 | rs6121224 | chr20:29860684-29860685 | Weak transcription ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
25 | rs4911529 | chr20:29860698-29860699 | Weak transcription ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
26 | rs576340409 | chr20:29860722-29860723 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
27 | rs538704285 | chr20:29860737-29860738 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
28 | rs542025822 | chr20:29860748-29860749 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
29 | rs555462578 | chr20:29860759-29860760 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
30 | rs536338106 | chr20:29860813-29860814 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs541033442 | chr20:29860819-29860820 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs563970606 | chr20:29860843-29860844 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs149064909 | chr20:29860845-29860846 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs112536337 | chr20:29860881-29860882 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs185547383 | chr20:29860883-29860884 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs115384205 | chr20:29860895-29860896 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs4911530 | chr20:29860933-29860934 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
38 | rs115755871 | chr20:29860969-29860970 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs576282600 | chr20:29860988-29860989 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs547867915 | chr20:29860993-29860994 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs538968378 | chr20:29861038-29861039 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs143093670 | chr20:29861081-29861082 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs367671706 | chr20:29861093-29861094 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs576131778 | chr20:29861100-29861101 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs371228437 | chr20:29861139-29861140 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs539828584 | chr20:29861204-29861205 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs556526589 | chr20:29861214-29861215 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs569939891 | chr20:29861223-29861224 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs116761135 | chr20:29861235-29861236 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs148216097 | chr20:29861258-29861259 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Gastric cancer | 17908304 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Colorectal cancer | 21645411 | CNVD |
Autism | 22495311 | CNVD |
Anaplastic large cell lymphoma | 18179710 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Pancreatic endocrine tumor | 17639061 | CNVD |
Chordoma | 18071362 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Breast cancer | 21806811 | CNVD |
Melanoma | 21693616 | CNVD |
Astrocytoma | 17387387 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
colon cancer | 17210682 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Breast cancer | 22028636 | CNVD |
Breast cancer | 21264507 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Myeloproliferative neoplasm | 20015882 | CNVD |
Soft tissue tumor | 16732325 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Gastric cancer | 17167181 | CNVD |
Myeloproliferative neoplasm | 19047681 | CNVD |
Breast cancer | 17899364 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Bladder cancer | 21909424 | CNVD |
Hodgkin''s lymphoma | 18641027 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
Cutaneous T-cell lymphoma | 21881587 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Colorectal cancer | 22860045 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Breast cancer | 17603634 | CNVD |
Melanoma | 18172304 | CNVD |
Breast cancer | 16608533 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
Breast cancer | 21364760 | CNVD |
small cell lung cancer | 20016488 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Lung cancer | 18438408 | CNVD |
Gastric cancer | 16891809 | CNVD |
Prostate cancer | 16573809 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Breast cancer | 17133270 | CNVD |
Oral cancer | 21386901 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
Breast cancer | 21509527 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Breast cancer | 22522925 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Amyotrophic lateral sclerosis | 20688871 | CNVD |
Gastric cancer | 22014070 | CNVD |
Cancer | 20164919 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:29859000-29860600 | ZNF genes & repeats | Duodenum Smooth Muscle | Duodenum |
2 | chr20:29859600-29860800 | ZNF genes & repeats | Adipose Nuclei | Adipose |
3 | chr20:29860000-29860800 | ZNF genes & repeats | Gastric | stomach |
4 | chr20:29860200-29860600 | ZNF genes & repeats | H1 Derived Mesenchymal Stem Cells | ES cell derived |
5 | chr20:29860600-29862000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
6 | chr20:29862000-29862600 | ZNF genes & repeats | H1 Derived Mesenchymal Stem Cells | ES cell derived |
7 | chr20:29865000-29866600 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
8 | chr20:29865800-29866000 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
9 | chr20:29865800-29866800 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
10 | chr20:29867400-29868000 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
11 | chr20:29901000-29901400 | Active TSS | A549 | lung |
12 | chr20:29901000-29901600 | Active TSS | ES-I3 Cell Line | embryonic stem cell |
13 | chr20:29901200-29901400 | Enhancers | Hela-S3 | cervix |
14 | chr20:29901800-29902200 | Active TSS | Fetal Heart | heart |
15 | chr20:29912400-29912800 | ZNF genes & repeats | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
16 | chr20:29918400-29919800 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
17 | chr20:29935800-29937200 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
18 | chr20:29956200-29956800 | ZNF genes & repeats | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |