Variant report

Variant	nsv1060396
Chromosome Location	chr16:47264261-47469345
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:823)
CpG islands
(count:305)
Chromatin interactive
region (count:59)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:823 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr16:47428252-47428453	HepG2	liver:	n/a	n/a
2	ARID3A	chr16:47357253-47357463	HepG2	liver:	n/a	n/a
3	ARID3A	chr16:47426038-47426363	K562	blood:	n/a	n/a
4	ARID3A	chr16:47431618-47431623	HepG2	liver:	n/a	n/a
5	ARID3A	chr16:47421094-47421294	HepG2	liver:	n/a	n/a
6	ATF1	chr16:47426003-47426482	K562	blood:	n/a	n/a
7	ATF1	chr16:47422668-47422993	K562	blood:	n/a	n/a
8	ATF1	chr16:47427309-47427338	K562	blood:	n/a	n/a
9	ATF2	chr16:47344576-47345243	GM12878	blood:	n/a	n/a
10	ATF2	chr16:47351722-47352080	GM12878	blood:	n/a	n/a
11	BATF	chr16:47364453-47364807	GM12878	blood:	n/a	n/a
12	BATF	chr16:47364473-47364700	GM12878	blood:	n/a	n/a
13	BATF	chr16:47426120-47426365	GM12878	blood:	n/a	n/a
14	BATF	chr16:47365904-47366048	GM12878	blood:	n/a	n/a
15	BATF	chr16:47344674-47344855	GM12878	blood:	n/a	n/a
16	BCL11A	chr16:47468300-47468435	GM12878	blood:	n/a	n/a
17	BCL11A	chr16:47425946-47426396	GM12878	blood:	n/a	n/a
18	BCL11A	chr16:47344674-47344906	GM12878	blood:	n/a	n/a
19	BCL11A	chr16:47345681-47345863	H1-hESC	embryonic stem cell:	n/a	n/a
20	BCL3	chr16:47351809-47352137	GM12878	blood:	n/a	n/a
21	BCLAF1	chr16:47425993-47426507	GM12878	blood:	n/a	n/a
22	BHLHE40	chr16:47426082-47426380	K562	blood:	n/a	n/a
23	BHLHE40	chr16:47422709-47422928	K562	blood:	n/a	n/a
24	BHLHE40	chr16:47351717-47352098	GM12878	blood:	n/a	n/a
25	CBX3	chr16:47383008-47383245	K562	blood:	n/a	n/a
26	CBX3	chr16:47422270-47422614	K562	blood:	n/a	n/a
27	CBX3	chr16:47425970-47426387	K562	blood:	n/a	n/a
28	CCNT2	chr16:47426027-47426309	K562	blood:	n/a	n/a
29	CEBPB	chr16:47280999-47281338	K562	blood:	n/a	chr16:47281152-47281163 chr16:47281154-47281165
30	CEBPB	chr16:47274852-47274872	IMR90	lung:	n/a	n/a
31	CEBPB	chr16:47399815-47400539	H1-hESC	embryonic stem cell:	n/a	n/a
32	CEBPB	chr16:47338272-47338613	IMR90	lung:	n/a	n/a
33	CEBPB	chr16:47318928-47319316	Hela-S3	cervix:	n/a	n/a
34	CEBPB	chr16:47268376-47268555	K562	blood:	n/a	n/a
35	CEBPB	chr16:47447682-47447892	HepG2	liver:	n/a	chr16:47447727-47447738
36	CEBPB	chr16:47274841-47274874	K562	blood:	n/a	n/a
37	CEBPB	chr16:47281027-47281314	IMR90	lung:	n/a	chr16:47281152-47281163 chr16:47281154-47281165
38	CEBPB	chr16:47335027-47335082	H1-hESC	embryonic stem cell:	n/a	n/a
39	CEBPB	chr16:47281025-47281260	HepG2	liver:	n/a	chr16:47281152-47281163 chr16:47281154-47281165
40	CEBPB	chr16:47371479-47371707	HepG2	liver:	n/a	n/a
41	CEBPB	chr16:47447638-47447768	K562	blood:	n/a	chr16:47447727-47447738
42	CEBPB	chr16:47275941-47276087	K562	blood:	n/a	chr16:47275959-47275970
43	CEBPB	chr16:47340948-47341071	K562	blood:	n/a	n/a
44	CEBPB	chr16:47343568-47343827	IMR90	lung:	n/a	n/a
45	CEBPB	chr16:47380502-47380806	A549	lung:	n/a	n/a
46	CEBPB	chr16:47367839-47368048	A549	lung:	n/a	chr16:47367934-47367945
47	CEBPB	chr16:47367786-47368030	IMR90	lung:	n/a	chr16:47367934-47367945
48	CEBPB	chr16:47464988-47465403	HepG2	liver:	n/a	chr16:47465276-47465287
49	CEBPB	chr16:47279201-47279444	A549	lung:	n/a	chr16:47279302-47279311
50	CEBPB	chr16:47279181-47279381	K562	blood:	n/a	chr16:47279302-47279311

(count:305 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr16:47409367-47409417	SK-N-SH	brain:	n/a
2	chr16:47344826-47344876	NT2-D1	testis:	n/a
3	chr16:47409367-47409417	K562	blood:	n/a
4	chr16:47338451-47338501	IMR90	lung:	fetal
5	chr16:47409367-47409417	Jurkat	blood:	n/a
6	chr16:47420506-47420556	HRE	kidney:	n/a
7	chr16:47344826-47344876	LNCaP	prostate:	n/a
8	chr16:47362879-47362929	AG04450	lung:	fetal
9	chr16:47362879-47362929	HNPCEpiC	eye:	n/a
10	chr16:47344826-47344876	HPAEpiC	pulmonary alveolar:	n/a
11	chr16:47344826-47344876	PFSK-1	brain:	n/a
12	chr16:47338451-47338501	GM12891	blood:	n/a
13	chr16:47338451-47338501	Hepatocyte	liver:	n/a
14	chr16:47420506-47420556	GM12891	blood:	n/a
15	chr16:47344826-47344876	NH-A	brain:	n/a
16	chr16:47420506-47420556	HEK293	kidney:	embryo
17	chr16:47362879-47362929	NT2-D1	testis:	n/a
18	chr16:47338451-47338501	PFSK-1	brain:	n/a
19	chr16:47344826-47344876	ovcar-3	ovarian:	n/a
20	chr16:47344826-47344876	Jurkat	blood:	n/a
21	chr16:47420506-47420556	MCF-7	breast:	n/a
22	chr16:47362879-47362929	HCT-116	colon:	n/a
23	chr16:47420506-47420556	SKMC	muscle:	n/a
24	chr16:47362879-47362929	BJ	skin:	n/a
25	chr16:47362879-47362929	H1-hESC	embryonic stem cell:	embryo
26	chr16:47344826-47344876	AoSMC	blood vessel:	n/a
27	chr16:47409367-47409417	AG10803	skin:	n/a
28	chr16:47362879-47362929	PrEC	prostate:	n/a
29	chr16:47344826-47344876	AG10803	skin:	n/a
30	chr16:47362879-47362929	HCM	heart:	n/a
31	chr16:47409367-47409417	MCF-7	breast:	n/a
32	chr16:47344826-47344876	Hepatocyte	liver:	n/a
33	chr16:47344826-47344876	U87	brain:	n/a
34	chr16:47420506-47420556	PFSK-1	brain:	n/a
35	chr16:47338451-47338501	Jurkat	blood:	n/a
36	chr16:47344826-47344876	PANC-1	pancreas:	n/a
37	chr16:47420506-47420556	MCF10A-Er-Src	breast:	n/a
38	chr16:47420506-47420556	HepG2	liver:	n/a
39	chr16:47338451-47338501	HUVEC	blood vessel:	n/a
40	chr16:47420506-47420556	HIPEpiC	eye:	n/a
41	chr16:47362879-47362929	SAEC	small airway:	n/a
42	chr16:47338451-47338501	K562	blood:	n/a
43	chr16:47409367-47409417	A549	lung:	n/a
44	chr16:47338451-47338501	HNPCEpiC	eye:	n/a
45	chr16:47362879-47362929	AG09309	skin:	n/a
46	chr16:47362879-47362929	HEEpiC	esophagus:	n/a
47	chr16:47338451-47338501	GM06990	blood:	n/a
48	chr16:47409367-47409417	PANC-1	pancreas:	n/a
49	chr16:47409367-47409417	HNPCEpiC	eye:	n/a
50	chr16:47344826-47344876	SK-N-SH	brain:	n/a

(count:59 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr16:47404244..47406062-chr16:47411179..47413433,2	K562	blood:
2	chr16:47343363..47345915-chr16:47349595..47352299,2	K562	blood:
3	chr16:47431082..47433440-chr16:47448856..47451690,2	K562	blood:
4	chr16:47282712..47286365-chr16:47287931..47291615,3	K562	blood:
5	chr16:47464879..47466397-chr16:47504717..47506667,2	K562	blood:
6	chr16:47404244..47406062-chr16:47411179..47413433,2	K562	blood:
7	chr16:47298562..47302472-chr16:47302634..47305844,3	K562	blood:
8	chr16:47425026..47428927-chr16:47493146..47496733,3	K562	blood:
9	chr16:47449583..47451141-chr16:47452818..47455615,2	K562	blood:
10	chr16:47432128..47434331-chr16:47440523..47442173,2	K562	blood:
11	chr16:47288247..47290542-chr16:47297549..47300017,2	K562	blood:
12	chr16:47386165..47387733-chr16:47392448..47394557,2	K562	blood:
13	chr16:47290498..47293236-chr16:47492799..47495777,2	MCF-7	breast:
14	chr16:47432128..47434331-chr16:47440523..47442173,2	K562	blood:
15	chr16:47352976..47355256-chr16:47362064..47365437,3	K562	blood:
16	chr16:47421435..47423287-chr16:47429426..47431466,2	MCF-7	breast:
17	chr16:47264762..47266642-chr16:47266702..47269300,2	K562	blood:
18	chr16:47315203..47316940-chr16:47529898..47531487,2	K562	blood:
19	chr16:47424343..47428876-chr16:47431366..47438255,7	K562	blood:
20	chr16:47414999..47416779-chr16:47426275..47428924,2	MCF-7	breast:
21	chr16:47257065..47259254-chr16:47293834..47296356,2	K562	blood:
22	chr16:47437100..47439827-chr16:47493895..47495575,2	K562	blood:
23	chr16:47310628..47312888-chr16:47313901..47316020,2	K562	blood:
24	chr16:47439487..47441195-chr16:47493204..47494931,2	K562	blood:
25	chr16:47416227..47418087-chr16:47500282..47502102,2	K562	blood:
26	chr16:47441890..47444403-chr16:47493696..47496197,3	K562	blood:
27	chr16:47337967..47339829-chr16:47344000..47345924,2	K562	blood:
28	chr16:47290686..47293346-chr16:47302878..47305751,2	K562	blood:
29	chr16:47431082..47433440-chr16:47448856..47451690,2	K562	blood:
30	chr16:47284043..47286034-chr16:47297265..47300260,2	K562	blood:
31	chr16:47263413..47265450-chr16:47271876..47274264,2	K562	blood:
32	chr16:47419086..47421518-chr16:47425690..47428678,2	K562	blood:
33	chr16:47424343..47428876-chr16:47431366..47438255,7	K562	blood:
34	chr16:47426138..47427741-chr16:47428449..47430981,2	K562	blood:
35	chr16:47417370..47418915-chr16:47424490..47426558,2	K562	blood:
36	chr16:47310628..47312888-chr16:47313901..47316020,2	K562	blood:
37	chr16:47298562..47302472-chr16:47302634..47305844,3	K562	blood:
38	chr1:192021477..192022058-chr16:47435294..47435896,2	MCF-7	breast:
39	chr16:47282712..47286365-chr16:47287931..47291615,3	K562	blood:
40	chr16:47311388..47314338-chr16:47314364..47316020,2	K562	blood:
41	chr16:47284043..47286034-chr16:47297265..47300260,2	K562	blood:
42	chr16:47311388..47314338-chr16:47314364..47316020,2	K562	blood:
43	chr16:47305590..47308851-chr16:47316493..47319236,3	K562	blood:
44	chr16:47352976..47355256-chr16:47362064..47365437,3	K562	blood:
45	chr16:47417370..47418915-chr16:47424490..47426558,2	K562	blood:
46	chr16:47259812..47262289-chr16:47267299..47269084,2	K562	blood:
47	chr16:47386165..47387733-chr16:47392448..47394557,2	K562	blood:
48	chr16:47407846..47410097-chr16:47493720..47495618,2	MCF-7	breast:
49	chr16:47264762..47266642-chr16:47266702..47269300,2	K562	blood:
50	chr16:47414999..47416779-chr16:47426275..47428924,2	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PHKB-1	chr16:47333358-47333859	ENSG00000261369.1
2	lnc-PHKB-1	chr16:47346550-47346651	ENSG00000261369.1
3	lnc-NETO2-2	chr16:47296678-47296925	NONHSAT142288
4	lnc-PHKB-1	chr16:47351460-47351725	ENSG00000261369.1
5	lnc-NETO2-2	chr16:47294571-47294606	NONHSAT142288
6	lnc-NETO2-3	chr16:47310408-47311851	NONHSAT142289

No data

Variant related genes	Relation type
ITFG1	TF binding region
ENSG00000261369	TF binding region
ENSG00000222767	TF binding region
ENSG00000260012	TF binding region
ITFG1	CpG island
ENSG00000261369	CpG island
ENSG00000222767	CpG island
ENSG00000260012	CpG island
ENSG00000102893	chromatin interactions
ENSG00000129636	chromatin interactions

Extended variants
information (count: 6560 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:6560 , 50 per page) page: 1 2 3 4 5 6 7 ... 132

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs547020128	chr16:47264270-47264271	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs553434832	chr16:47264301-47264302	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs373254614	chr16:47264332-47264333	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs188112663	chr16:47264340-47264341	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs571521916	chr16:47264356-47264357	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs144043807	chr16:47264367-47264368	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs557010714	chr16:47264370-47264371	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs144971618	chr16:47264572-47264573	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs536104359	chr16:47264600-47264601	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs7205285	chr16:47264621-47264622	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs572615759	chr16:47264698-47264699	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs539896489	chr16:47264699-47264700	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs558154317	chr16:47264729-47264730	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs560168246	chr16:47264735-47264736	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs112560306	chr16:47264804-47264805	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs76102848	chr16:47264826-47264827	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs544171057	chr16:47264900-47264901	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs563871027	chr16:47264948-47264949	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs148634958	chr16:47264949-47264950	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs531223323	chr16:47264956-47264957	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs527693285	chr16:47264958-47264959	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs561419509	chr16:47264980-47264981	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs528617271	chr16:47264981-47264982	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs547080917	chr16:47264985-47264986	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs192579415	chr16:47265098-47265099	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs532430734	chr16:47265132-47265133	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs550950342	chr16:47265169-47265170	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs183686883	chr16:47265232-47265233	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs376154583	chr16:47265324-47265325	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs536103876	chr16:47265329-47265330	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs557554648	chr16:47265336-47265337	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs554349564	chr16:47265376-47265377	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs575829884	chr16:47265483-47265484	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs371643308	chr16:47265484-47265485	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs77238471	chr16:47265513-47265514	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs533658813	chr16:47265544-47265545	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs546272487	chr16:47265596-47265597	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs558395544	chr16:47265638-47265639	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs142078094	chr16:47265642-47265643	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs187539541	chr16:47265727-47265728	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs556081431	chr16:47265737-47265738	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs548950240	chr16:47265771-47265772	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs192523633	chr16:47265795-47265796	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs546288292	chr16:47265832-47265833	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs561481432	chr16:47265839-47265840	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs368569047	chr16:47265859-47265860	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs151136930	chr16:47265899-47265900	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs540808246	chr16:47265915-47265916	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs184877095	chr16:47265934-47265935	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs571853743	chr16:47265973-47265974	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Renal cell carcinoma	18765545	CNVD
Sudden cardiac death	19188705	CNVD
Multiple myeloma	16616336	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21364760	CNVD
Ewing''s sarcoma	17952124	CNVD
Myelofibrosis	22110671	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Bladder cancer	21909424	CNVD
Colorectal cancer	19359472	CNVD
Olfactory neuroblastoma	18408657	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	22341455	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:2642 , 50 per page) page: 1 2 3 4 5 6 7 ... 53

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47178800-47296600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:47224400-47265600	Weak transcription	HSMMtube	muscle
3	chr16:47230000-47332600	Weak transcription	Thymus	Thymus
4	chr16:47231800-47298600	Weak transcription	Right Ventricle	heart
5	chr16:47232400-47291200	Weak transcription	GM12878-XiMat	blood
6	chr16:47233200-47273400	Weak transcription	Small Intestine	intestine
7	chr16:47236200-47291600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr16:47239000-47270200	Weak transcription	Brain Substantia Nigra	brain
9	chr16:47245200-47291600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr16:47245400-47294400	Weak transcription	Pancreas	Pancrea
11	chr16:47246200-47291000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr16:47246800-47298600	Weak transcription	Brain Angular Gyrus	brain
13	chr16:47247200-47299000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr16:47247600-47290000	Weak transcription	Esophagus	oesophagus
15	chr16:47248000-47290600	Weak transcription	HepG2	liver
16	chr16:47250400-47291400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr16:47250400-47296600	Weak transcription	Lung	lung
18	chr16:47251200-47289600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr16:47251400-47274400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr16:47251400-47281400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr16:47251600-47272400	Weak transcription	Fetal Kidney	kidney
22	chr16:47251600-47272800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr16:47251600-47281200	Weak transcription	Brain Hippocampus Middle	brain
24	chr16:47251600-47291000	Weak transcription	HSMM	muscle
25	chr16:47251800-47272800	Weak transcription	Brain Germinal Matrix	brain
26	chr16:47252000-47291800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr16:47252200-47269800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr16:47252200-47270800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr16:47252200-47271800	Weak transcription	Hela-S3	cervix
30	chr16:47252200-47281400	Weak transcription	Dnd41	blood
31	chr16:47252200-47291200	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr16:47252400-47270400	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr16:47252800-47265800	Weak transcription	Primary B cells from cord blood	blood
34	chr16:47252800-47267800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr16:47252800-47281400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr16:47252800-47291000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr16:47252800-47291400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr16:47253000-47267800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr16:47253000-47290800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr16:47253200-47265400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr16:47253200-47291000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr16:47253200-47294400	Weak transcription	Colon Smooth Muscle	Colon
43	chr16:47253400-47294800	Weak transcription	Psoas Muscle	Psoas
44	chr16:47253800-47270600	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr16:47255000-47270600	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr16:47255200-47270600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr16:47258400-47292000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr16:47258600-47291400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr16:47258600-47291600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr16:47258600-47298400	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links