Variant report

Variant	nsv1060582
Chromosome Location	chr16:70940551-71168820
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2593)
CpG islands
(count:1159)
Chromatin interactive
region (count:287)
LncRNA
region (count:12)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2593 , 50 per page) page: 1 2 3 4 5 6 7 ... 52

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr16:70971786-70971832	HepG2	liver:	n/a	n/a
2	ARID3A	chr16:70961655-70961897	K562	blood:	n/a	n/a
3	ARID3A	chr16:71021049-71021536	K562	blood:	n/a	n/a
4	ARID3A	chr16:70956273-70956284	HepG2	liver:	n/a	n/a
5	ARID3A	chr16:71155214-71155415	HepG2	liver:	n/a	n/a
6	ARID3A	chr16:71135528-71135631	K562	blood:	n/a	n/a
7	ATF1	chr16:71117539-71117895	K562	blood:	n/a	n/a
8	ATF1	chr16:70987738-70988064	K562	blood:	n/a	n/a
9	ATF1	chr16:70992165-70992287	K562	blood:	n/a	n/a
10	ATF1	chr16:71115100-71115287	K562	blood:	n/a	n/a
11	ATF1	chr16:71142323-71142501	K562	blood:	n/a	n/a
12	ATF1	chr16:70980043-70980287	K562	blood:	n/a	n/a
13	ATF1	chr16:71120453-71120767	K562	blood:	n/a	n/a
14	ATF1	chr16:71128261-71128310	K562	blood:	n/a	n/a
15	ATF1	chr16:71088250-71088569	K562	blood:	n/a	n/a
16	ATF1	chr16:70977109-70977159	K562	blood:	n/a	n/a
17	ATF1	chr16:71076132-71076230	K562	blood:	n/a	n/a
18	ATF1	chr16:71112061-71112067	K562	blood:	n/a	n/a
19	ATF1	chr16:70990674-70991056	K562	blood:	n/a	n/a
20	ATF1	chr16:71021180-71021685	K562	blood:	n/a	n/a
21	ATF2	chr16:71061713-71062433	H1-hESC	embryonic stem cell:	n/a	n/a
22	ATF2	chr16:71042989-71044337	H1-hESC	embryonic stem cell:	n/a	n/a
23	ATF2	chr16:70987603-70988175	H1-hESC	embryonic stem cell:	n/a	n/a
24	ATF2	chr16:71061483-71062714	H1-hESC	embryonic stem cell:	n/a	n/a
25	ATF2	chr16:71043362-71044048	H1-hESC	embryonic stem cell:	n/a	n/a
26	ATF3	chr16:71021188-71021575	K562	blood:	n/a	n/a
27	BACH1	chr16:71020996-71021702	H1-hESC	embryonic stem cell:	n/a	n/a
28	BACH1	chr16:71165544-71165704	H1-hESC	embryonic stem cell:	n/a	n/a
29	BACH1	chr16:71112932-71113088	K562	blood:	n/a	n/a
30	BACH1	chr16:71021074-71021564	K562	blood:	n/a	n/a
31	BACH1	chr16:70969729-70969731	K562	blood:	n/a	n/a
32	BACH1	chr16:71061535-71062530	H1-hESC	embryonic stem cell:	n/a	n/a
33	BATF	chr16:70963263-70963562	GM12878	blood:	n/a	n/a
34	BCL11A	chr16:71061909-71062286	H1-hESC	embryonic stem cell:	n/a	n/a
35	BCL11A	chr16:71061959-71062411	H1-hESC	embryonic stem cell:	n/a	n/a
36	BCL11A	chr16:71043533-71043780	H1-hESC	embryonic stem cell:	n/a	n/a
37	BCL3	chr16:70983386-70983627	GM12878	blood:	n/a	n/a
38	BCL3	chr16:70973768-70974260	GM12878	blood:	n/a	chr16:70974079-70974088
39	BCL3	chr16:70976273-70976645	GM12878	blood:	n/a	n/a
40	BCL3	chr16:70976321-70976732	GM12878	blood:	n/a	n/a
41	BCL3	chr16:70973830-70974232	GM12878	blood:	n/a	chr16:70974079-70974088
42	BHLHE40	chr16:71002389-71002555	K562	blood:	n/a	n/a
43	BHLHE40	chr16:71114194-71114201	GM12878	blood:	n/a	n/a
44	BHLHE40	chr16:70976497-70976604	K562	blood:	n/a	n/a
45	BHLHE40	chr16:71066495-71066497	HepG2	liver:	n/a	n/a
46	BHLHE40	chr16:70997563-70997637	K562	blood:	n/a	n/a
47	BHLHE40	chr16:70956190-70956375	HepG2	liver:	n/a	n/a
48	BHLHE40	chr16:71040650-71040696	K562	blood:	n/a	n/a
49	BHLHE40	chr16:71019095-71019184	GM12878	blood:	n/a	n/a
50	BRCA1	chr16:71040005-71040046	GM12878	blood:	n/a	n/a

(count:1159 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr16:71008063-71008113	ovcar-3	ovarian:	n/a
2	chr16:70955223-70955273	SK-N-MC	brain:	n/a
3	chr16:71009778-71009828	ECC-1	luminal epithelium:	n/a
4	chr16:71008732-71008782	RPTEC	kidney:	n/a
5	chr16:71061931-71061981	GM12891	blood:	n/a
6	chr16:71008732-71008782	PANC-1	pancreas:	n/a
7	chr16:71061931-71061981	BE2_C	brain:	n/a
8	chr16:71011407-71011457	H1-hESC	embryonic stem cell:	embryo
9	chr16:71034828-71034878	MCF-7	breast:	n/a
10	chr16:71034828-71034878	PFSK-1	brain:	n/a
11	chr16:71008063-71008113	HRPEpiC	eye:	n/a
12	chr16:71043770-71043820	HCPEpiC	choroid plexus:	n/a
13	chr16:71162835-71162885	HRCEpiC	kidney:	n/a
14	chr16:71061931-71061981	H1-hESC	embryonic stem cell:	embryo
15	chr16:71162835-71162885	GM12892	blood:	n/a
16	chr16:71008732-71008782	SAEC	small airway:	n/a
17	chr16:71034828-71034878	RPTEC	kidney:	n/a
18	chr16:71071560-71071610	PFSK-1	brain:	n/a
19	chr16:71009778-71009828	PFSK-1	brain:	n/a
20	chr16:70955879-70955929	A549	lung:	n/a
21	chr16:71008454-71008504	NT2-D1	testis:	n/a
22	chr16:70955223-70955273	K562	blood:	n/a
23	chr16:71162835-71162885	MCF-7	breast:	n/a
24	chr16:71162835-71162885	AG04450	lung:	fetal
25	chr16:71008454-71008504	CMK	blood:	n/a
26	chr16:71088536-71088586	GM12878	blood:	n/a
27	chr16:71011407-71011457	AG04450	lung:	fetal
28	chr16:71098674-71098724	SAEC	small airway:	n/a
29	chr16:71034828-71034878	AG10803	skin:	n/a
30	chr16:71008063-71008113	HMEC	breast:	n/a
31	chr16:71008063-71008113	NHBE	bronchial:	n/a
32	chr16:71011407-71011457	GM12878	blood:	n/a
33	chr16:71034828-71034878	AoSMC	blood vessel:	n/a
34	chr16:71008454-71008504	Caco-2	colon:	n/a
35	chr16:70955223-70955273	HRCEpiC	kidney:	n/a
36	chr16:71008063-71008113	NB4	blood:	n/a
37	chr16:71068280-71068330	HepG2	liver:	n/a
38	chr16:71009778-71009828	BE2_C	brain:	n/a
39	chr16:71071560-71071610	MCF10A-Er-Src	breast:	n/a
40	chr16:71008732-71008782	T-47D	breast:	n/a
41	chr16:71008063-71008113	PFSK-1	brain:	n/a
42	chr16:70955879-70955929	Jurkat	blood:	n/a
43	chr16:71008063-71008113	AG09309	skin:	n/a
44	chr16:70967321-70967371	U87	brain:	n/a
45	chr16:71008050-71008100	HAEpiC	amniotic membrane:	n/a
46	chr16:71034828-71034878	HEEpiC	esophagus:	n/a
47	chr16:71011407-71011457	ECC-1	luminal epithelium:	n/a
48	chr16:71068280-71068330	HCM	heart:	n/a
49	chr16:71008732-71008782	IMR90	lung:	fetal
50	chr16:71034828-71034878	HNPCEpiC	eye:	n/a

(count:287 , 50 per page) page: 1 2 3 4 5 6

No.	Distal block	Cell Line	Cell type
1	chr16:71133984..71136804-chr16:71138409..71140730,2	K562	blood:
2	chr16:70974977..70976783-chr16:70983975..70986129,4	K562	blood:
3	chr16:71137230..71139618-chr16:71153836..71156298,2	MCF-7	breast:
4	chr1:146712973..146714848-chr16:71024751..71027232,2	K562	blood:
5	chr16:71061827..71064339-chr16:71071388..71072891,2	K562	blood:
6	chr16:71076158..71078301-chr16:71079831..71081586,2	MCF-7	breast:
7	chr16:71040545..71041066-chr16:71392113..71392842,2	MCF-7	breast:
8	chr16:71122248..71124252-chr16:71128666..71131313,2	K562	blood:
9	chr16:71084915..71086652-chr16:71089188..71090873,2	MCF-7	breast:
10	chr16:71030533..71033114-chr16:71033879..71035665,2	K562	blood:
11	chr16:71001861..71002521-chr4:43883310..43883810,2	MCF-7	breast:
12	chr1:149221974..149225327-chr16:71033119..71035749,8	MCF-7	breast:
13	chr16:71061848..71063742-chr16:71063882..71066688,2	MCF-7	breast:
14	chr16:71013218..71015708-chr16:71098677..71101219,2	MCF-7	breast:
15	chr16:70974977..70976783-chr16:70983975..70986129,4	K562	blood:
16	chr16:71029791..71031662-chr16:71033598..71035836,2	MCF-7	breast:
17	chr1:146554434..146556308-chr16:71027049..71028871,2	K562	blood:
18	chr16:71153294..71157404-chr16:71158865..71161936,4	K562	blood:
19	chr16:70988936..70990480-chr16:71001097..71003483,2	MCF-7	breast:
20	chr16:71012907..71014525-chr16:71017910..71020041,2	MCF-7	breast:
21	chr16:71033324..71034616-chr16:71390965..71391955,3	MCF-7	breast:
22	chr16:71065152..71067149-chr16:71070441..71072492,2	K562	blood:
23	chr1:147726345..147728130-chr16:71033394..71034407,16	MCF-7	breast:
24	chr16:71027582..71030361-chr16:71042724..71044400,2	MCF-7	breast:
25	chr16:71078815..71080334-chr16:71097062..71099743,2	MCF-7	breast:
26	chr16:70984290..70985826-chr16:70990032..70992588,2	K562	blood:
27	chr16:71044698..71048905-chr16:71097713..71101055,3	MCF-7	breast:
28	chr16:71107666..71109248-chr16:71109772..71111296,2	K562	blood:
29	chr16:71016847..71019528-chr16:71019803..71022593,2	K562	blood:
30	chr16:71145435..71147324-chr16:71148805..71150825,2	K562	blood:
31	chr16:71087507..71089377-chr16:71093085..71095406,3	K562	blood:
32	chr16:71033432..71034748-chr16:71345163..71346194,8	MCF-7	breast:
33	chr16:71093361..71096486-chr16:71097889..71100926,4	MCF-7	breast:
34	chr16:71063816..71066851-chr16:71068085..71072011,3	MCF-7	breast:
35	chr16:70969502..70971128-chr16:70977170..70980144,2	K562	blood:
36	chr16:71021462..71023279-chr16:71026554..71028512,2	MCF-7	breast:
37	chr1:149223818..149225453-chr16:71029830..71031514,2	MCF-7	breast:
38	chr16:71043873..71044605-chr5:87436587..87437176,2	MCF-7	breast:
39	chr16:71063878..71065606-chr16:71094806..71097674,2	MCF-7	breast:
40	chr16:71065152..71066661-chr16:71069759..71071941,2	K562	blood:
41	chr1:150980852..150981657-chr16:71090485..71091267,2	MCF-7	breast:
42	chr16:71122208..71124913-chr16:71127299..71129468,2	MCF-7	breast:
43	chr16:71027068..71030012-chr16:71031679..71033339,2	K562	blood:
44	chr16:71018662..71021748-chr16:71021953..71025067,5	MCF-7	breast:
45	chr16:71067340..71069362-chr16:71076009..71078462,2	K562	blood:
46	chr16:71009810..71011533-chr16:71011886..71014440,2	K562	blood:
47	chr16:70973640..70974283-chr16:71001999..71002517,2	MCF-7	breast:
48	chr16:70969725..70971624-chr16:70973300..70975715,2	MCF-7	breast:
49	chr16:71153294..71157404-chr16:71158865..71161936,4	K562	blood:
50	chr16:71133984..71136804-chr16:71138409..71140730,2	K562	blood:

(count:12 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CALB2-4	chr16:71121629-71121793	ENSG00000259833.1
2	lnc-CALB2-4	chr16:71114769-71114884	ENSG00000259833.1
3	lnc-CALB2-4	chr16:71020753-71021463	ucscGeneNc_uc002fci_1
4	lnc-CALB2-4	chr16:71114772-71114884	ENSG00000259833.1
5	lnc-CALB2-4	chr16:71124086-71124278	ENSG00000259833.1
6	lnc-CALB2-4	chr16:71127494-71127570	ENSG00000259833.1
7	lnc-IL34-4	chr16:71017348-71020288	ucscGeneNc_uc002fch_1
8	lnc-CALB2-3	chr16:71147708-71147903	ENSG00000259798.1
9	lnc-CALB2-3	chr16:71147255-71147541	ENSG00000259798.1
10	lnc-CALB2-4	chr16:71124359-71125289	ucscGeneNc_uc002fci_1
11	lnc-CALB2-4	chr16:71124086-71124393	ENSG00000259833.1
12	lnc-CALB2-4	chr16:71121629-71121793	ENSG00000259833.1

No data

Variant related genes	Relation type
ENSG00000259798	TF binding region
HYDIN	TF binding region
ENSG00000259833	TF binding region
ENSG00000259798	CpG island
HYDIN	CpG island
ENSG00000259833	CpG island
ENSG00000131778	chromatin interactions
ENSG00000180917	chromatin interactions
ENSG00000143363	chromatin interactions
ENSG00000140832	chromatin interactions
ENSG00000259833	chromatin interactions
ENSG00000260593	chromatin interactions
ENSG00000157423	chromatin interactions
ENSG00000258101	chromatin interactions
ENSG00000131781	chromatin interactions
ENSG00000230832	chromatin interactions
ENSG00000167553	chromatin interactions
ENSG00000172137	chromatin interactions
ENSG00000272426	chromatin interactions
ENSG00000206737	chromatin interactions
ENSG00000259798	chromatin interactions
ENSG00000201699	chromatin interactions

Extended variants
information (count: 8429 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:8429 , 50 per page) page: 1 2 3 4 5 6 7 ... 169

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs528980405	chr16:70940624-70940625	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs367836291	chr16:70940653-70940654	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs540808935	chr16:70940668-70940669	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs1774454	chr16:70940723-70940724	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs559457126	chr16:70940725-70940726	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs371280879	chr16:70940747-70940748	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs375514493	chr16:70940827-70940828	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs1798489	chr16:70940870-70940871	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs532965203	chr16:70940894-70940895	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs112626498	chr16:70940895-70940896	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs529107126	chr16:70940980-70940981	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs9935457	chr16:70941031-70941032	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs1798488	chr16:70941067-70941068	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs530747726	chr16:70941076-70941077	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs543393304	chr16:70941083-70941084	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs1798487	chr16:70941093-70941094	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs568410463	chr16:70941106-70941107	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs535935975	chr16:70941268-70941269	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs200420917	chr16:70941271-70941272	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs376087083	chr16:70941290-70941291	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs368950142	chr16:70941316-70941317	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs202224164	chr16:70941318-70941319	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs200410378	chr16:70941362-70941363	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs113656574	chr16:70941364-70941365	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs200593817	chr16:70941377-70941378	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs201896117	chr16:70941378-70941379	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs566246383	chr16:70941449-70941450	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs540050976	chr16:70941484-70941485	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs558420833	chr16:70941488-70941489	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs576787960	chr16:70941507-70941508	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs543808041	chr16:70941510-70941511	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs1798486	chr16:70941523-70941524	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs555332195	chr16:70941551-70941552	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs573563795	chr16:70941572-70941573	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs541076248	chr16:70941582-70941583	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs376675911	chr16:70941587-70941588	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs191001028	chr16:70941613-70941614	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs1798485	chr16:70941620-70941621	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs532929283	chr16:70941647-70941648	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs544788859	chr16:70941704-70941705	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs563174446	chr16:70941727-70941728	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs552085658	chr16:70941754-70941755	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs201227615	chr16:70941828-70941829	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs530713437	chr16:70941839-70941840	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs549051376	chr16:70941840-70941841	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs377348678	chr16:70941868-70941869	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs868748	chr16:70941888-70941889	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs12102709	chr16:70941929-70941930	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs885576	chr16:70941963-70941964	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs529290866	chr16:70941968-70941969	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Prostate cancer	17245344	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute myeloid leukemia	16864856	CNVD
Infiltrating lobular breast cancer	19191266	CNVD
T-cell lymphomas	19863542	CNVD
small cell lung cancer	20016488	CNVD
Hepatocellular carcinoma	16750200	CNVD
Medulloblastoma	16783165	CNVD
Neuroblastoma	21899760	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	18628472	CNVD
Breast cancer	21806811	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21509527	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Neuroblastoma	18923524	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Bipolar disorder	19114987	CNVD
Schizophrenia	23813976	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:2613 , 50 per page) page: 1 2 3 4 5 6 7 ... 53

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70922600-70949400	Weak transcription	Pancreas	Pancrea
2	chr16:70934200-70949200	Weak transcription	Fetal Intestine Small	intestine
3	chr16:70935000-70944400	Weak transcription	Fetal Intestine Large	intestine
4	chr16:70937000-70943000	Strong transcription	Fetal Brain Female	brain
5	chr16:70937400-70943000	Strong transcription	Brain Anterior Caudate	brain
6	chr16:70937800-70941400	Weak transcription	Fetal Stomach	stomach
7	chr16:70937800-70947600	Weak transcription	Fetal Brain Male	brain
8	chr16:70938000-70943400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr16:70938000-70949400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr16:70938200-70942400	Weak transcription	Brain Angular Gyrus	brain
11	chr16:70938200-70949800	Weak transcription	Brain Substantia Nigra	brain
12	chr16:70938400-70944600	Weak transcription	Brain Hippocampus Middle	brain
13	chr16:70940000-70941000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr16:70940000-70943000	Strong transcription	Brain Inferior Temporal Lobe	brain
15	chr16:70940200-70940600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr16:70940400-70943000	Strong transcription	Brain Germinal Matrix	brain
17	chr16:70940600-70941200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr16:70940600-70942400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr16:70941000-70941400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr16:70941000-70941400	Strong transcription	Brain Cingulate Gyrus	brain
21	chr16:70941200-70942800	Strong transcription	Stomach Smooth Muscle	stomach
22	chr16:70941400-70941600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr16:70941400-70942800	Strong transcription	Fetal Stomach	stomach
24	chr16:70941400-70951400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr16:70941600-70941800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr16:70941800-70942600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr16:70942200-70942600	Active TSS	Spleen	Spleen
28	chr16:70942400-70942600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr16:70942400-70943000	Strong transcription	Brain Angular Gyrus	brain
30	chr16:70942600-70943000	Enhancers	Spleen	Spleen
31	chr16:70942600-70949200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr16:70942800-70943000	ZNF genes & repeats	Fetal Stomach	stomach
33	chr16:70943000-70944200	Weak transcription	Fetal Brain Female	brain
34	chr16:70943000-70945800	Weak transcription	Brain Germinal Matrix	brain
35	chr16:70943000-70949400	Weak transcription	Brain Anterior Caudate	brain
36	chr16:70943000-70950000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr16:70943000-70955800	Weak transcription	Brain Angular Gyrus	brain
38	chr16:70946000-70950600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr16:70949200-70950000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr16:70949200-70950000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr16:70949200-70950200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
42	chr16:70949200-70950400	ZNF genes & repeats	Fetal Intestine Small	intestine
43	chr16:70949200-70955400	Weak transcription	Fetal Brain Male	brain
44	chr16:70949400-70950000	Strong transcription	Brain Anterior Caudate	brain
45	chr16:70949400-70950000	ZNF genes & repeats	Pancreas	Pancrea
46	chr16:70949400-70950200	ZNF genes & repeats	Brain Germinal Matrix	brain
47	chr16:70949400-70950400	ZNF genes & repeats	Fetal Brain Female	brain
48	chr16:70949400-70951400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr16:70949600-70950600	ZNF genes & repeats	Fetal Stomach	stomach
50	chr16:70949800-70950600	Strong transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links