Variant report

Variant	nsv1061144
Chromosome Location	chr19:24439471-24596738
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:121483249..121485033-chr19:24456836..24458356,4	K562	blood:
2	chr1:121483249..121485033-chr19:24456855..24458356,4	K562	blood:

Extended variants
information (count: 10983 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:10983 , 50 per page) page: 1 2 3 4 5 6 7 ... 220

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs537804725	chr19:24439471-24439472	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs549506200	chr19:24439499-24439500	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs73528785	chr19:24439518-24439519	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs535182741	chr19:24439570-24439571	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs184687063	chr19:24439577-24439578	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs571879635	chr19:24439601-24439602	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs539263387	chr19:24439607-24439608	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs559249863	chr19:24439617-24439618	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs575933464	chr19:24439628-24439629	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs543741648	chr19:24439652-24439653	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs146698069	chr19:24439666-24439667	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs574805994	chr19:24439681-24439682	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs2193520	chr19:24439743-24439744	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs189137400	chr19:24439769-24439770	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs368861868	chr19:24439771-24439772	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs527848781	chr19:24439786-24439787	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs552809532	chr19:24439833-24439834	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs372154053	chr19:24439834-24439835	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs115810343	chr19:24439838-24439839	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs550482632	chr19:24439875-24439876	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs567939264	chr19:24439896-24439897	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs180929128	chr19:24439916-24439917	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs547054564	chr19:24439927-24439928	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs201648800	chr19:24439961-24439962	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs539200075	chr19:24439999-24440000	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs73015249	chr19:24440600-24440601	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs551090358	chr19:24440658-24440659	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs569723732	chr19:24440659-24440660	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs150179323	chr19:24440669-24440670	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs555335179	chr19:24440706-24440707	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs187220592	chr19:24440735-24440736	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs112319879	chr19:24440764-24440765	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs145145060	chr19:24440776-24440777	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs534966646	chr19:24440796-24440797	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs189941282	chr19:24440853-24440854	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs112011697	chr19:24440892-24440893	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs546294828	chr19:24440902-24440903	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs558303193	chr19:24440941-24440942	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs10425862	chr19:24440959-24440960	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs370158759	chr19:24440972-24440973	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs544003371	chr19:24440974-24440975	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs181208217	chr19:24441015-24441016	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs142346161	chr19:24441031-24441032	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs529588469	chr19:24441054-24441055	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs146476084	chr19:24441115-24441116	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs558901759	chr19:24441123-24441124	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs139166364	chr19:24441128-24441129	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs551029149	chr19:24441132-24441133	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs563408522	chr19:24441141-24441142	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs562615042	chr19:24441152-24441153	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
Lung cancer	18438408	CNVD

Chromatin state (count:285 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24435000-24440000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:24436000-24439600	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:24440600-24444800	ZNF genes & repeats	Liver	Liver
4	chr19:24442400-24445000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr19:24443000-24446200	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr19:24444000-24444800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
7	chr19:24444800-24446400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr19:24445200-24445400	ZNF genes & repeats	Brain Substantia Nigra	brain
9	chr19:24445400-24445800	Active TSS	Brain Substantia Nigra	brain
10	chr19:24450200-24451400	ZNF genes & repeats	Adipose Nuclei	Adipose
11	chr19:24451400-24451600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
12	chr19:24455800-24462600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr19:24457000-24458600	ZNF genes & repeats	Liver	Liver
14	chr19:24457600-24458600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
15	chr19:24468000-24473400	ZNF genes & repeats	Liver	Liver
16	chr19:24468400-24496800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
17	chr19:24468600-24477400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
18	chr19:24469200-24504400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr19:24472000-24475000	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr19:24472800-24473200	Active TSS	Aorta	Aorta
21	chr19:24473200-24474200	Weak transcription	Aorta	Aorta
22	chr19:24474000-24474800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
23	chr19:24474200-24474400	ZNF genes & repeats	Brain Substantia Nigra	brain
24	chr19:24474200-24474400	ZNF genes & repeats	Dnd41	blood
25	chr19:24474200-24474400	ZNF genes & repeats	Osteobl	bone
26	chr19:24474200-24474600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
27	chr19:24474200-24474600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
28	chr19:24474200-24474800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
29	chr19:24474200-24474800	ZNF genes & repeats	Primary T cells from cord blood	blood
30	chr19:24474200-24474800	Active TSS	Aorta	Aorta
31	chr19:24474200-24474800	ZNF genes & repeats	NH-A	brain
32	chr19:24474200-24475000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
33	chr19:24474400-24474800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr19:24474600-24474800	ZNF genes & repeats	HepG2	liver
35	chr19:24474600-24474800	ZNF genes & repeats	HUVEC	blood vessel
36	chr19:24474600-24474800	ZNF genes & repeats	K562	blood
37	chr19:24475000-24475600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr19:24475600-24504400	ZNF genes & repeats	Liver	Liver
39	chr19:24478600-24484600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr19:24480000-24493400	ZNF genes & repeats	Adipose Nuclei	Adipose
41	chr19:24480800-24481400	Active TSS	Aorta	Aorta
42	chr19:24481600-24494000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
43	chr19:24484400-24485000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr19:24484800-24486000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
45	chr19:24486400-24487200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
46	chr19:24486400-24490800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
47	chr19:24491800-24492400	Active TSS	Aorta	Aorta
48	chr19:24495600-24497600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
49	chr19:24499000-24502200	ZNF genes & repeats	Adipose Nuclei	Adipose
50	chr19:24499200-24502000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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