Variant report

Variant	nsv1061222
Chromosome Location	chr17:15672934-15999778
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5580)
CpG islands
(count:4030)
Chromatin interactive
region (count:185)
LncRNA
region (count:22)
Mature miRNA
region (count: 0)
miRNA target
sites (count:4)

(count:5580 , 50 per page) page: 1 2 3 4 5 6 7 ... 112

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr17:15751284-15751354	HepG2	liver:	n/a	n/a
2	ARID3A	chr17:15917080-15917553	HepG2	liver:	n/a	n/a
3	ARID3A	chr17:15901668-15902127	K562	blood:	n/a	n/a
4	ARID3A	chr17:15901834-15902081	HepG2	liver:	n/a	n/a
5	ARID3A	chr17:15885154-15885723	K562	blood:	n/a	n/a
6	ARID3A	chr17:15943987-15944643	HepG2	liver:	n/a	n/a
7	ARID3A	chr17:15902968-15903142	K562	blood:	n/a	n/a
8	ARID3A	chr17:15797015-15797215	HepG2	liver:	n/a	n/a
9	ARID3A	chr17:15862124-15862878	K562	blood:	n/a	n/a
10	ARID3A	chr17:15929429-15929620	K562	blood:	n/a	n/a
11	ARID3A	chr17:15902481-15903240	HepG2	liver:	n/a	n/a
12	ARID3A	chr17:15824115-15824501	HepG2	liver:	n/a	n/a
13	ARID3A	chr17:15869288-15870075	HepG2	liver:	n/a	n/a
14	ARID3A	chr17:15942859-15943125	HepG2	liver:	n/a	n/a
15	ARID3A	chr17:15732174-15732334	K562	blood:	n/a	n/a
16	ARID3A	chr17:15946193-15946249	HepG2	liver:	n/a	n/a
17	ARID3A	chr17:15732156-15732356	HepG2	liver:	n/a	n/a
18	ARID3A	chr17:15862592-15862696	HepG2	liver:	n/a	n/a
19	ARID3A	chr17:15776171-15776279	K562	blood:	n/a	n/a
20	ARID3A	chr17:15931068-15932170	K562	blood:	n/a	n/a
21	ARID3A	chr17:15914877-15915353	HepG2	liver:	n/a	n/a
22	ATF1	chr17:15875851-15876087	K562	blood:	n/a	n/a
23	ATF1	chr17:15930958-15931807	K562	blood:	n/a	n/a
24	ATF1	chr17:15885244-15885573	K562	blood:	n/a	n/a
25	ATF1	chr17:15902769-15903231	K562	blood:	n/a	n/a
26	ATF1	chr17:15787038-15787445	K562	blood:	n/a	n/a
27	ATF1	chr17:15862062-15862804	K562	blood:	n/a	n/a
28	ATF2	chr17:15734368-15734979	GM12878	blood:	n/a	n/a
29	ATF2	chr17:15884411-15884928	GM12878	blood:	n/a	n/a
30	ATF2	chr17:15862152-15862876	GM12878	blood:	n/a	n/a
31	ATF2	chr17:15902507-15903189	H1-hESC	embryonic stem cell:	n/a	n/a
32	ATF2	chr17:15869409-15870334	H1-hESC	embryonic stem cell:	n/a	chr17:15869886-15869893
33	ATF2	chr17:15930985-15931892	GM12878	blood:	n/a	n/a
34	ATF2	chr17:15931264-15931818	GM12878	blood:	n/a	n/a
35	ATF2	chr17:15884539-15884890	GM12878	blood:	n/a	n/a
36	ATF2	chr17:15869467-15870240	H1-hESC	embryonic stem cell:	n/a	chr17:15869886-15869893
37	ATF2	chr17:15902715-15903257	GM12878	blood:	n/a	n/a
38	ATF2	chr17:15734474-15734908	GM12878	blood:	n/a	n/a
39	ATF2	chr17:15902636-15903255	H1-hESC	embryonic stem cell:	n/a	n/a
40	ATF2	chr17:15862096-15862864	GM12878	blood:	n/a	n/a
41	ATF3	chr17:15862405-15862898	HCT-116	colon:	n/a	n/a
42	ATF3	chr17:15902763-15903342	A549	lung:	n/a	chr17:15902790-15902799
43	ATF3	chr17:15862158-15862877	K562	blood:	n/a	n/a
44	ATF3	chr17:15824081-15824430	HepG2	liver:	n/a	n/a
45	ATF3	chr17:15824043-15824356	K562	blood:	n/a	n/a
46	ATF3	chr17:15902819-15903127	K562	blood:	n/a	n/a
47	ATF3	chr17:15824079-15824287	HepG2	liver:	n/a	n/a
48	ATF3	chr17:15931346-15931800	K562	blood:	n/a	n/a
49	ATF3	chr17:15824077-15824242	K562	blood:	n/a	n/a
50	ATF3	chr17:15862386-15862953	HCT-116	colon:	n/a	n/a

(count:4030 , 50 per page) page: 1 2 3 4 5 6 7 ... 81

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:15686309-15686359	HEK293	kidney:	embryo
2	chr17:15853470-15853520	HRCEpiC	kidney:	n/a
3	chr17:15869607-15869657	RPTEC	kidney:	n/a
4	chr17:15690132-15690182	HRE	kidney:	n/a
5	chr17:15686309-15686359	HEK293	kidney:	embryo
6	chr17:15853470-15853520	HRCEpiC	kidney:	n/a
7	chr17:15869607-15869657	RPTEC	kidney:	n/a
8	chr17:15690132-15690182	HRE	kidney:	n/a
9	chr17:15683060-15683110	SAEC	small airway:	n/a
10	chr17:15770678-15770728	RPTEC	kidney:	n/a
11	chr17:15903290-15903340	HUVEC	blood vessel:	n/a
12	chr17:15848110-15848160	HAEpiC	amniotic membrane:	n/a
13	chr17:15845357-15845407	Hepatocyte	liver:	n/a
14	chr17:15902560-15902610	BE2_C	brain:	n/a
15	chr17:15820699-15820749	HMEC	breast:	n/a
16	chr17:15906619-15906669	NT2-D1	testis:	n/a
17	chr17:15820699-15820749	GM12878	blood:	n/a
18	chr17:15860951-15861001	NH-A	brain:	n/a
19	chr17:15824118-15824168	HEEpiC	esophagus:	n/a
20	chr17:15869607-15869657	HAEpiC	amniotic membrane:	n/a
21	chr17:15901788-15901838	HIPEpiC	eye:	n/a
22	chr17:15770678-15770728	AoSMC	blood vessel:	n/a
23	chr17:15770678-15770728	MCF-7	breast:	n/a
24	chr17:15824118-15824168	A549	lung:	n/a
25	chr17:15903687-15903737	AoSMC	blood vessel:	n/a
26	chr17:15902560-15902610	SK-N-SH	brain:	n/a
27	chr17:15903739-15903789	ovcar-3	ovarian:	n/a
28	chr17:15821386-15821436	GM06990	blood:	n/a
29	chr17:15902660-15902710	PrEC	prostate:	n/a
30	chr17:15848216-15848266	MCF10A-Er-Src	breast:	n/a
31	chr17:15817372-15817422	Hela-S3	cervix:	n/a
32	chr17:15902660-15902710	PANC-1	pancreas:	n/a
33	chr17:15690132-15690182	IMR90	lung:	fetal
34	chr17:15686309-15686359	NH-A	brain:	n/a
35	chr17:15692425-15692475	SKMC	muscle:	n/a
36	chr17:15821386-15821436	HEEpiC	esophagus:	n/a
37	chr17:15902660-15902710	GM12892	blood:	n/a
38	chr17:15686309-15686359	LNCaP	prostate:	n/a
39	chr17:15821016-15821066	NH-A	brain:	n/a
40	chr17:15689920-15689970	GM06990	blood:	n/a
41	chr17:15902560-15902610	HUVEC	blood vessel:	n/a
42	chr17:15848828-15848878	SAEC	small airway:	n/a
43	chr17:15692425-15692475	BE2_C	brain:	n/a
44	chr17:15902952-15903002	NH-A	brain:	n/a
45	chr17:15849556-15849606	SK-N-SH_RA	brain:	n/a
46	chr17:15902560-15902610	HPAEpiC	pulmonary alveolar:	n/a
47	chr17:15686309-15686359	SK-N-SH_RA	brain:	n/a
48	chr17:15770678-15770728	SKMC	muscle:	n/a
49	chr17:15817372-15817422	CMK	blood:	n/a
50	chr17:15683060-15683110	CMK	blood:	n/a

(count:185 , 50 per page) page: 1 2 3 4

No.	Distal block	Cell Line	Cell type
1	chr17:15818394..15820006-chr17:15827327..15829668,2	K562	blood:
2	chr17:15864704..15867341-chr17:15873793..15875461,2	K562	blood:
3	chr17:15943040..15946944-chr17:15948607..15952058,5	K562	blood:
4	chr17:15854395..15858152-chr17:15900264..15903071,3	K562	blood:
5	chr17:15962217..15964355-chr17:15964514..15967478,2	K562	blood:
6	chr17:15963401..15966357-chr17:16012433..16014400,2	K562	blood:
7	chr17:15553842..15556755-chr17:15901183..15904132,3	MCF-7	breast:
8	chr17:15845973..15849997-chr17:15902965..15906205,4	K562	blood:
9	chr17:15874041..15877357-chr17:15878347..15881339,3	K562	blood:
10	chr17:15900606..15905101-chr17:15906142..15909387,7	K562	blood:
11	chr17:15732168..15733133-chr17:15847994..15848750,2	MCF-7	breast:
12	chr17:15852422..15855230-chr17:15859382..15862010,2	MCF-7	breast:
13	chr17:15852422..15855230-chr17:15859382..15862010,2	MCF-7	breast:
14	chr17:15816332..15819901-chr17:15820743..15823352,3	K562	blood:
15	chr17:15861172..15863617-chr17:15879746..15882543,3	K562	blood:
16	chr17:15920209..15922955-chr17:15924177..15926730,2	K562	blood:
17	chr17:15861872..15863395-chr17:15873905..15875556,2	K562	blood:
18	chr17:15825518..15827432-chr17:15846826..15848843,2	MCF-7	breast:
19	chr17:15905164..15907778-chr17:15930822..15933599,2	K562	blood:
20	chr17:15811700..15814068-chr17:15815539..15817502,2	K562	blood:
21	chr17:15847638..15850175-chr17:15861024..15863509,3	MCF-7	breast:
22	chr17:15901865..15904758-chr17:15916069..15919403,5	MCF-7	breast:
23	chr17:15847031..15848615-chr17:15884845..15887227,2	K562	blood:
24	chr17:15926396..15928188-chr17:15929360..15931528,3	K562	blood:
25	chr17:15819602..15821859-chr17:15822735..15824245,2	MCF-7	breast:
26	chr17:15935922..15937736-chr17:15946128..15948484,2	K562	blood:
27	chr17:15918728..15924279-chr17:15927914..15931403,6	K562	blood:
28	chr17:15822515..15824157-chr17:15838082..15840784,2	K562	blood:
29	chr17:15791535..15794057-chr17:15795691..15797755,2	MCF-7	breast:
30	chr17:15811001..15813774-chr17:15817788..15820656,2	K562	blood:
31	chr17:15918143..15920477-chr17:15921495..15924893,3	K562	blood:
32	chr1:201979391..201980146-chr17:15902285..15903134,2	HCT-116	colon:
33	chr17:15788370..15791029-chr17:15792412..15794241,3	MCF-7	breast:
34	chr17:15553526..15556124-chr17:15902249..15904435,2	MCF-7	breast:
35	chr17:15905982..15907631-chr17:15908656..15910993,3	K562	blood:
36	chr17:15782611..15786264-chr17:15794710..15797679,3	MCF-7	breast:
37	chr17:15861872..15863395-chr17:15873905..15875556,2	K562	blood:
38	chr17:15850283..15852272-chr17:15862525..15865065,2	K562	blood:
39	chr17:15788370..15791029-chr17:15792412..15794241,3	MCF-7	breast:
40	chr17:15811700..15814068-chr17:15815539..15817502,2	K562	blood:
41	chr17:15903003..15903658-chr3:58419013..58419568,2	Hela-S3	cervix:
42	chr17:15917993..15922048-chr17:15928334..15931723,4	MCF-7	breast:
43	chr17:15866407..15869569-chr17:15884863..15887251,3	K562	blood:
44	chr17:15902291..15902878-chr2:128284164..128285109,2	Hela-S3	cervix:
45	chr17:15911426..15914074-chr17:15914828..15917002,2	K562	blood:
46	chr17:15846970..15849466-chr17:15929115..15931769,2	K562	blood:
47	chr17:15842295..15844901-chr17:15846137..15847870,2	MCF-7	breast:
48	chr17:15978459..15981234-chr17:15984249..15986179,2	K562	blood:
49	chr17:15866407..15869569-chr17:15884863..15887251,3	K562	blood:
50	chr17:15904178..15905978-chr17:15910048..15912649,2	K562	blood:

(count:22 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZSWIM7-2	chr17:15883557-15883681	NONHSAT145880
2	lnc-ZSWIM7-6	chr17:15960288-15961051	NONHSAT145890
3	lnc-ZSWIM7-2	chr17:15880893-15881227	NONHSAT145880
4	lnc-AC002553.1-2	chr17:15947935-15948275	NONHSAT145887
5	lnc-ZSWIM7-4	chr17:15948169-15948278	NONHSAT145886
6	lnc-TRIM16-5	chr17:15709980-15710212	ENSG00000237057
7	lnc-ZSWIM7-1	chr17:15949364-15949795	NONHSAT145888
8	lnc-TTC19-1	chr17:15987356-15987695	NONHSAT145891
9	lnc-TRIM16-5	chr17:15709555-15710212	ENSG00000237057.2
10	lnc-ADORA2B-1	chr17:15884512-15885318	predAs_engstrom06_BC031588_1
11	lnc-ZSWIM7-1	chr17:15948896-15948923	NONHSAT145888
12	lnc-ZSWIM7-7	chr17:15788959-15789222	predAs_ge08_ADORA2B_1
13	lnc-TRIM16-5	chr17:15719279-15719356	ENSG00000237057.2
14	lnc-ZSWIM7-2	chr17:15881358-15881477	NONHSAT145880
15	lnc-TRIM16-5	chr17:15720842-15720943	ENSG00000237057
16	lnc-AC002553.1-1	chr17:15943786-15944587	NONHSAT145885
17	lnc-TRIM16-5	chr17:15720842-15721056	ENSG00000237057.2
18	lnc-ZSWIM7-2	chr17:15879883-15880406	NONHSAT145880
19	lnc-ZSWIM7-6	chr17:15961221-15961249	NONHSAT145890
20	lnc-TRIM16-5	chr17:15719279-15719356	ENSG00000237057
21	lnc-ZSWIM7-4	chr17:15947766-15948163	NONHSAT145886
22	lnc-ZSWIM7-1	chr17:15949376-15949795	ENSG00000248550

No data

(count:4 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	ADORA2B	hsa-miR-27b-3p	chr17:15878960-15878980
2	ADORA2B	hsa-miR-27b-3p	chr17:15878973-15878980
3	NCOR1	hsa-let-7b-5p	chr17:15934835-15934829
4	TTC19	hsa-miR-30c-5p	chr17:15930416-15930438

Variant related genes	Relation type
ZSWIM5P1	TF binding region
ADORA2B	TF binding region
ENSG00000237057	TF binding region
RNU6-314P	TF binding region
TTC19	TF binding region
ENSG00000227790	TF binding region
ENSG00000265519	TF binding region
RNA5SP436	TF binding region
NCOR1	TF binding region
IL6STP1	TF binding region
ENSG00000233979	TF binding region
MEIS3P1	TF binding region
ENSG00000227782	TF binding region
ZSWIM7	TF binding region
ENSG00000233090	TF binding region
RPLP1P11	TF binding region
ZSWIM5P1	CpG island
ADORA2B	CpG island
ENSG00000237057	CpG island
RNU6-314P	CpG island
TTC19	CpG island
ENSG00000227790	CpG island
ENSG00000265519	CpG island
RNA5SP436	CpG island
NCOR1	CpG island
IL6STP1	CpG island
ENSG00000233979	CpG island
MEIS3P1	CpG island
ENSG00000227782	CpG island
ZSWIM7	CpG island
ENSG00000233090	CpG island
RPLP1P11	CpG island
ENSG00000161547	chromatin interactions
ENSG00000108474	chromatin interactions
ENSG00000120742	chromatin interactions
ENSG00000227782	chromatin interactions
ENSG00000144895	chromatin interactions
ENSG00000251537	chromatin interactions
ENSG00000092931	chromatin interactions
ENSG00000214941	chromatin interactions
ENSG00000112081	chromatin interactions
ENSG00000144711	chromatin interactions
ENSG00000011295	chromatin interactions
ENSG00000170425	chromatin interactions
ENSG00000223501	chromatin interactions
ENSG00000230844	chromatin interactions
ENSG00000231500	chromatin interactions
ENSG00000149547	chromatin interactions
ENSG00000227790	chromatin interactions
ENSG00000075413	chromatin interactions
ENSG00000266261	chromatin interactions
ENSG00000107036	chromatin interactions
ENSG00000143933	chromatin interactions
ENSG00000126653	chromatin interactions
ENSG00000163435	chromatin interactions
ENSG00000168291	chromatin interactions
ENSG00000199071	chromatin interactions
ENSG00000234678	chromatin interactions
ENSG00000163166	chromatin interactions
ENSG00000251192	chromatin interactions
ENSG00000243686	chromatin interactions
ENSG00000141027	chromatin interactions
BDH2	miRNA target sites

Extended variants
information (count: 10648 )
Associated
traits (count: 177 )

Variant overlapped rSNPs/rCNVs (count:10648 , 50 per page) page: 1 2 3 4 5 6 7 ... 213

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs537158337	chr17:15672983-15672984	Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
2	rs556827127	chr17:15672989-15672990	Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
3	rs576901386	chr17:15673009-15673010	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs116732799	chr17:15673014-15673015	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs141338566	chr17:15673015-15673016	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs542409735	chr17:15673064-15673065	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs562319490	chr17:15673084-15673085	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs530864101	chr17:15673090-15673091	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs544687310	chr17:15673106-15673107	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs564461678	chr17:15673126-15673127	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs533138080	chr17:15673178-15673179	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs546617221	chr17:15673203-15673204	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs565610825	chr17:15673223-15673224	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs114387486	chr17:15673326-15673327	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs192975496	chr17:15673337-15673338	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs568244263	chr17:15673397-15673398	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs373265347	chr17:15673434-15673435	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs536890023	chr17:15673530-15673531	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs557004145	chr17:15673537-15673538	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs145397097	chr17:15673601-15673602	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs539414832	chr17:15673606-15673607	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs184159016	chr17:15673611-15673612	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs573540035	chr17:15673641-15673642	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs189555546	chr17:15673646-15673647	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs572591335	chr17:15673648-15673649	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs660347	chr17:15673658-15673659	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs148005421	chr17:15673672-15673673	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs659957	chr17:15673720-15673721	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs659945	chr17:15673727-15673728	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs555831643	chr17:15673746-15673747	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs111865045	chr17:15673773-15673774	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs544510862	chr17:15673778-15673779	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs565772	chr17:15673779-15673780	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs7208480	chr17:15673784-15673785	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs564579015	chr17:15673785-15673786	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs201559829	chr17:15673811-15673812	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs62072426	chr17:15673812-15673813	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs529227675	chr17:15673821-15673822	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs560123246	chr17:15673858-15673859	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs181780368	chr17:15673911-15673912	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs548457179	chr17:15673927-15673928	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs71253176	chr17:15673965-15673966	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs530710294	chr17:15673967-15673968	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs550524612	chr17:15673974-15673975	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs570530612	chr17:15673978-15673979	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs112920148	chr17:15673991-15673992	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs71253177	chr17:15673996-15673997	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs71253178	chr17:15674024-15674025	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs138662042	chr17:15674046-15674047	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs566474397	chr17:15674058-15674059	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:177)

Disease	PMID	Source
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	17603634	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	19435819	CNVD
Non-small cell lung cancer	19010865	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16774939	CNVD
Hepatocellular carcinoma	18803288	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Esophageal adenocarcinoma	18519675	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Chordoma	21602918	CNVD
Miller-Dieker syndrome	22283845	CNVD
Non-syndromic sensorineural hearing loss	17457615	CNVD
Cancer	22429812	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Ewing''s sarcoma	21437220	CNVD
Follicular lymphoma	19010834	CNVD
Colorectal cancer	20709793	CNVD
Acute myeloid leukemia	16864856	CNVD
Endometrial cancer	22040021	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Breast cancer	22028636	CNVD
Breast cancer	20837533	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
colon cancer	17210682	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Basal cell lymphoma	17053054	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Cancer	16751803	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Chronic lymphocytic leukemia	17971485	CNVD
Basal cell lymphoma	17170743	CNVD
Breast cancer	16461572	CNVD
Colorectal cancer	16272173	CNVD
Follicular lymphoma	17170743	CNVD
Human rectal carcinomas	16397240	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Ovarian cancer	22174824	CNVD
Moyamoya disease	22323933	CNVD
small cell lung cancer	20016488	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	21251322	CNVD
Myelodysplastic syndrome	21251322	CNVD
Cancer	20164919	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20724749	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Acute myeloid leukemia	17237825	CNVD
Colorectal cancer	21645411	CNVD
HIV/AIDS	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
HIV/AIDS	17953491	CNVD
HIV/AIDS	20877625	CNVD
Immune disease	21076436	CNVD
Rheumatoid arthritis	17953491	CNVD
Type 1 diabetes	17953491	CNVD
HIV/AIDS	15637236	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Ovarian cancer	21781307	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Neurofibromatosis	18196300	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Multiple myeloma	16616336	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21509527	CNVD
Pancreatic cancer	21811587	CNVD
Autism	17322880	CNVD
Hereditary neuropathy with liability to pressure palsy	19521722	CNVD
Schizophrenia	19571808	CNVD
Schizophrenia	19955444	CNVD
Charcot-marie-tooth disease	18787571	CNVD
Breast cancer	20409316	CNVD
Autism	18414403	CNVD
Breast cancer	17001317	CNVD
Rhabdomyosarcoma	16790082	CNVD
Myelofibrosis	22110671	CNVD
Peripheral neuropathy	21193943	CNVD
Schizophrenia	20587603	CNVD
Schizophrenia	22958593	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Ovarian cancer	20844748	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Charcot-marie-tooth disease	16463004	CNVD
Osteosarcoma	22292074	CNVD
Charcot	16760730	CNVD
Mental retardation	17901693	CNVD
ovarian endometriomas	16273235	CNVD
Breast cancer	21858162	CNVD
Ovarian cancer	21720365	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17142309	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Autism	22102821	CNVD
Gastric cancer	18160780	CNVD
Non-syndromic sensorineural hearing loss	19212409	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
early-passage human iPS cells	21368824	CNVD
Pancreatic cancer	17952125	CNVD
Osteosarcoma	21215367	CNVD
Smith-Magenis syndrome	18923513	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	16272173	CNVD
Austim spectrum disorder	21302340	CNVD
Autism	22492990	CNVD
Congenital abnormalities	21549014	CNVD
Developmental delay	18414209	CNVD
Developmental delay	21549014	CNVD
Epilepsy	20970697	CNVD
Mental retardation	18414209	CNVD
Mental retardation	21549014	CNVD
Smith-Magenis syndrome	21981782	CNVD
Smith-Magenis syndrome	20188345	CNVD
Smith-Magenis syndrome	16775514	CNVD
Smith-Magenis syndrome	22585170	CNVD
Smith-Magenis syndrome	22241247	CNVD
Autism	20970697	CNVD
Mental retardation	19951919	CNVD
Potocki-Lupski syndrome	21271655	CNVD
Potocki-lupski syndrome	17357070	CNVD
Potocki-lupski syndrome	20110824	CNVD
Potocki-lupski syndrome	18923514	CNVD
Potocki-lupski syndrome	22241247	CNVD
Potocki-lupski syndrome	20188345	CNVD
Schizophrenia	21399695	CNVD
Mental retardation	16773131	CNVD
Adenocarcinoma	19607727	CNVD
Squamous cell cancer	19607727	CNVD
Non-small cell lung cancer	21829676	CNVD
Glioblastoma multiforme	17002787	CNVD
Charcot-marie-tooth disease	22470819	CNVD
Neurofibromatosis	22470819	CNVD
Neuropathy	22470819	CNVD
Smith-Magenis syndrome	18301319	CNVD
Smith-Magenis syndrome	17357070	CNVD
Smith-Magenis syndrome	18469339	CNVD
Smith-Magenis syndrome	22241097	CNVD
Smith-Magenis syndrome	22470819	CNVD
Tourette syndrome	18923514	CNVD
Type 1 diabetes	22470819	CNVD
Potocki-lupski syndrome	18469339	CNVD
Follicular lymphoma	20505157	CNVD
T-cell lymphomas	19863542	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:6950 , 50 per page) page: 1 2 3 4 5 6 7 ... 139

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15672000-15673200	Enhancers	Fetal Muscle Trunk	muscle
2	chr17:15672600-15674200	Enhancers	Stomach Smooth Muscle	stomach
3	chr17:15672800-15673000	Bivalent Enhancer	Fetal Stomach	stomach
4	chr17:15672800-15674000	Enhancers	Fetal Muscle Leg	muscle
5	chr17:15672800-15674400	Enhancers	Left Ventricle	heart
6	chr17:15672800-15674800	Enhancers	Fetal Heart	heart
7	chr17:15673200-15673600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr17:15673600-15674000	Enhancers	Fetal Muscle Trunk	muscle
9	chr17:15674000-15674200	Enhancers	Fetal Stomach	stomach
10	chr17:15680600-15682400	Weak transcription	Aorta	Aorta
11	chr17:15682200-15682600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr17:15682400-15682600	ZNF genes & repeats	Aorta	Aorta
13	chr17:15682600-15686200	Weak transcription	Aorta	Aorta
14	chr17:15683400-15683600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr17:15683600-15685400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr17:15685400-15686000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr17:15685600-15685800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
18	chr17:15685600-15685800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
19	chr17:15685600-15685800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
20	chr17:15685600-15685800	Enhancers	Ovary	ovary
21	chr17:15685600-15686000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr17:15685600-15686200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr17:15685600-15686200	Bivalent/Poised TSS	Brain Angular Gyrus	brain
24	chr17:15685600-15686200	Enhancers	Right Ventricle	heart
25	chr17:15685600-15686400	Enhancers	Fetal Lung	lung
26	chr17:15685600-15687200	Enhancers	Colon Smooth Muscle	Colon
27	chr17:15685800-15686000	Enhancers	Fetal Brain Male	brain
28	chr17:15685800-15686200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
29	chr17:15685800-15686200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
30	chr17:15685800-15686200	Enhancers	Primary hematopoietic stem cells	blood
31	chr17:15685800-15686200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
32	chr17:15685800-15686200	Enhancers	Fetal Muscle Leg	muscle
33	chr17:15685800-15686200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
34	chr17:15685800-15686400	Active TSS	Ovary	ovary
35	chr17:15685800-15686400	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr17:15685800-15686400	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr17:15685800-15686600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr17:15685800-15686600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr17:15685800-15686600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr17:15685800-15686800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr17:15686000-15686200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr17:15686000-15686200	Bivalent Enhancer	Fetal Stomach	stomach
43	chr17:15686000-15686400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr17:15686000-15686400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr17:15686000-15686600	Active TSS	Adipose Nuclei	Adipose
46	chr17:15686000-15686600	Active TSS	Fetal Muscle Trunk	muscle
47	chr17:15686000-15686600	Enhancers	Placenta	Placenta
48	chr17:15686000-15686600	Active TSS	Left Ventricle	heart
49	chr17:15686000-15686600	Active TSS	Right Atrium	heart
50	chr17:15686000-15686800	Active TSS	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links