Variant report

Variant	nsv10625
Chromosome Location	chr4:187353044-187358125
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTNR1A-1	chr4:187353299-187353392	ENSG00000251165.1
2	lnc-MTNR1A-1	chr4:187353299-187353392	NONHSAT099658
3	lnc-MTNR1A-1	chr4:187353299-187353392	ENSG00000251165.1

Extended variants
information (count: 507 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:507 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs370793512	chr4:187353063-187353064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs570584996	chr4:187353074-187353075	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs58116685	chr4:187353080-187353081	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs114637040	chr4:187353085-187353086	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs369273634	chr4:187353089-187353090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs374380871	chr4:187353101-187353102	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs6825341	chr4:187353113-187353114	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs139393496	chr4:187353130-187353131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs67902527	chr4:187353133-187353134	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs28664079	chr4:187353144-187353145	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs28672368	chr4:187353154-187353155	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs560708344	chr4:187353162-187353163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs375656774	chr4:187353163-187353164	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs28451830	chr4:187353165-187353166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs548533877	chr4:187353166-187353167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs546436742	chr4:187353168-187353169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs371856414	chr4:187353173-187353174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs374195286	chr4:187353174-187353175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs563044800	chr4:187353175-187353176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs370231091	chr4:187353177-187353178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs72714115	chr4:187353180-187353181	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs115460404	chr4:187353182-187353183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs568099023	chr4:187353186-187353187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs527363031	chr4:187353187-187353188	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs72714117	chr4:187353188-187353189	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs77221528	chr4:187353198-187353199	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs67235209	chr4:187353199-187353200	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs556368202	chr4:187353236-187353237	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs569603173	chr4:187353241-187353242	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs190049150	chr4:187353248-187353249	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs181879812	chr4:187353250-187353251	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs28673768	chr4:187353257-187353258	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs373832519	chr4:187353272-187353273	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs540687149	chr4:187353279-187353280	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs141832485	chr4:187353285-187353286	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs115626068	chr4:187353300-187353301	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
37	rs546078979	chr4:187353323-187353324	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
38	rs563117499	chr4:187353349-187353350	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
39	rs368670369	chr4:187353351-187353352	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
40	rs538452317	chr4:187353352-187353353	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
41	rs67831206	chr4:187353362-187353363	Weak transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs376816987	chr4:187353368-187353369	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
43	rs377421122	chr4:187353370-187353371	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
44	rs561642533	chr4:187353373-187353374	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
45	rs527289730	chr4:187353381-187353382	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
46	rs547420423	chr4:187353382-187353383	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
47	rs570449095	chr4:187353387-187353388	Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
48	rs66481440	chr4:187353388-187353389	Weak transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs66985092	chr4:187353390-187353391	Weak transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs569541354	chr4:187353396-187353397	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	16608533	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	16272173	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital anomalies of the kidney and urinary tract	20505237	CNVD
Testicular germ cell tumor	18059402	CNVD
Ovarian cancer	22174824	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21785460	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21633010	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20581869	CNVD
Hepatocellular carcinoma	16750200	CNVD
abnormal development	18461090	CNVD
Neuroblastoma	16790693	CNVD
Colorectal cancer	16774939	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	17053054	CNVD
Facioscapulohumeral muscular dystrophy	21829175	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	20844748	CNVD
Autism	18414403	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164920	CNVD
Cancer	20164919	CNVD
Breast cancer	20409316	CNVD
Rhabdomyosarcoma	16790082	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Developmental delay	22127048	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Cervical cancer	21063398	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:187347200-187353200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:187353200-187353400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:187353200-187354000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:187354000-187354400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:187354000-187357000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:187354400-187357000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:187357000-187357200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:187357000-187357800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:187357000-187357800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:187357000-187357800	ZNF genes & repeats	Gastric	stomach
11	chr4:187357600-187357800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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