Variant report

Variant	nsv1062687
Chromosome Location	chr16:82165516-82213799
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:916)
CpG islands
(count:1161)
Chromatin interactive
region (count:66)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:916 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr16:82171421-82171791	K562	blood:	n/a	chr16:82171498-82171514
2	ARID3A	chr16:82203782-82203982	K562	blood:	n/a	n/a
3	ARID3A	chr16:82186318-82186575	K562	blood:	n/a	n/a
4	ARID3A	chr16:82203663-82204220	HepG2	liver:	n/a	n/a
5	ATF1	chr16:82186202-82186631	K562	blood:	n/a	n/a
6	ATF3	chr16:82203551-82204057	HepG2	liver:	n/a	chr16:82203971-82203980 chr16:82203909-82203918
7	ATF3	chr16:82186239-82186529	K562	blood:	n/a	n/a
8	ATF3	chr16:82203551-82203958	K562	blood:	n/a	chr16:82203909-82203918
9	BACH1	chr16:82204199-82204294	K562	blood:	n/a	n/a
10	BACH1	chr16:82203841-82204108	H1-hESC	embryonic stem cell:	n/a	n/a
11	BCLAF1	chr16:82203666-82204152	GM12878	blood:	n/a	n/a
12	BHLHE40	chr16:82200782-82200796	K562	blood:	n/a	n/a
13	BHLHE40	chr16:82203561-82204092	GM12878	blood:	n/a	n/a
14	BHLHE40	chr16:82186268-82186497	K562	blood:	n/a	n/a
15	BHLHE40	chr16:82203395-82204432	K562	blood:	n/a	n/a
16	BHLHE40	chr16:82203428-82204348	HepG2	liver:	n/a	n/a
17	BRCA1	chr16:82203568-82203959	HepG2	liver:	n/a	n/a
18	BRCA1	chr16:82203499-82203957	Hela-S3	cervix:	n/a	n/a
19	CBX3	chr16:82203410-82204468	K562	blood:	n/a	n/a
20	CCNT2	chr16:82203351-82204398	K562	blood:	n/a	n/a
21	CEBPB	chr16:82209244-82209596	HepG2	liver:	n/a	chr16:82209416-82209425 chr16:82209414-82209425 chr16:82209416-82209425 chr16:82209414-82209427 chr16:82209416-82209425 chr16:82209416-82209425
22	CEBPB	chr16:82203751-82203965	HepG2	liver:	n/a	n/a
23	CEBPB	chr16:82205635-82205861	A549	lung:	n/a	n/a
24	CEBPB	chr16:82186139-82186762	MCF-7	breast:	n/a	n/a
25	CEBPB	chr16:82190820-82191450	K562	blood:	n/a	chr16:82190996-82191007
26	CEBPB	chr16:82190844-82191194	A549	lung:	n/a	chr16:82190996-82191007
27	CEBPB	chr16:82209244-82209572	IMR90	lung:	n/a	chr16:82209416-82209425 chr16:82209414-82209425 chr16:82209416-82209425 chr16:82209414-82209427 chr16:82209416-82209425 chr16:82209416-82209425
28	CEBPB	chr16:82209387-82209527	H1-hESC	embryonic stem cell:	n/a	chr16:82209416-82209425 chr16:82209414-82209425 chr16:82209416-82209425 chr16:82209414-82209427 chr16:82209416-82209425 chr16:82209416-82209425
29	CEBPB	chr16:82190836-82191169	Hela-S3	cervix:	n/a	chr16:82190996-82191007
30	CEBPB	chr16:82190820-82191192	HepG2	liver:	n/a	chr16:82190996-82191007
31	CEBPB	chr16:82203556-82204068	Hela-S3	cervix:	n/a	n/a
32	CEBPB	chr16:82186026-82186851	MCF-7	breast:	n/a	n/a
33	CEBPB	chr16:82190815-82191229	MCF-7	breast:	n/a	chr16:82190996-82191007
34	CEBPB	chr16:82190805-82191146	K562	blood:	n/a	chr16:82190996-82191007
35	CEBPB	chr16:82190786-82191267	MCF-7	breast:	n/a	chr16:82190996-82191007
36	CEBPB	chr16:82190791-82191296	A549	lung:	n/a	chr16:82190996-82191007
37	CEBPB	chr16:82189376-82189568	K562	blood:	n/a	n/a
38	CEBPB	chr16:82205664-82205809	IMR90	lung:	n/a	n/a
39	CEBPB	chr16:82209244-82209577	K562	blood:	n/a	chr16:82209416-82209425 chr16:82209414-82209425 chr16:82209416-82209425 chr16:82209414-82209427 chr16:82209416-82209425 chr16:82209416-82209425
40	CEBPB	chr16:82209296-82209544	Hela-S3	cervix:	n/a	chr16:82209416-82209425 chr16:82209414-82209425 chr16:82209416-82209425 chr16:82209414-82209427 chr16:82209416-82209425 chr16:82209416-82209425
41	CEBPB	chr16:82190873-82191115	H1-hESC	embryonic stem cell:	n/a	chr16:82190996-82191007
42	CEBPB	chr16:82209253-82209562	A549	lung:	n/a	chr16:82209416-82209425 chr16:82209414-82209425 chr16:82209416-82209425 chr16:82209414-82209427 chr16:82209416-82209425 chr16:82209416-82209425
43	CEBPB	chr16:82190811-82191204	IMR90	lung:	n/a	chr16:82190996-82191007
44	CEBPD	chr16:82203484-82204114	HepG2	liver:	n/a	n/a
45	CHD1	chr16:82203241-82203743	H1-hESC	embryonic stem cell:	n/a	n/a
46	CHD1	chr16:82203633-82203647	GM12878	blood:	n/a	n/a
47	CHD2	chr16:82205451-82205545	K562	blood:	n/a	n/a
48	CHD2	chr16:82203532-82204361	K562	blood:	n/a	n/a
49	CHD2	chr16:82203821-82204240	GM12878	blood:	n/a	n/a
50	CHD2	chr16:82203483-82204435	H1-hESC	embryonic stem cell:	n/a	n/a

(count:1161 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr16:82203986-82204036	HUVEC	blood vessel:	n/a
2	chr16:82191819-82191869	HCT-116	colon:	n/a
3	chr16:82203986-82204036	HUVEC	blood vessel:	n/a
4	chr16:82191819-82191869	HCT-116	colon:	n/a
5	chr16:82203996-82204046	BJ	skin:	n/a
6	chr16:82203996-82204046	NHBE	bronchial:	n/a
7	chr16:82203702-82203752	GM06990	blood:	n/a
8	chr16:82204172-82204222	HEK293	kidney:	embryo
9	chr16:82204172-82204222	Hepatocyte	liver:	n/a
10	chr16:82172885-82172935	HL-60	blood:	n/a
11	chr16:82204172-82204222	HEEpiC	esophagus:	n/a
12	chr16:82171817-82171867	HMEC	breast:	n/a
13	chr16:82203585-82203635	GM12892	blood:	n/a
14	chr16:82203986-82204036	SAEC	small airway:	n/a
15	chr16:82182319-82182369	SK-N-MC	brain:	n/a
16	chr16:82172885-82172935	HRCEpiC	kidney:	n/a
17	chr16:82204391-82204441	MCF-7	breast:	n/a
18	chr16:82203988-82204038	SK-N-SH_RA	brain:	n/a
19	chr16:82191819-82191869	HAEpiC	amniotic membrane:	n/a
20	chr16:82173104-82173154	Caco-2	colon:	n/a
21	chr16:82171817-82171867	HAEpiC	amniotic membrane:	n/a
22	chr16:82204945-82204995	AG04450	lung:	fetal
23	chr16:82203702-82203752	AG04449	skin:	fetal
24	chr16:82203702-82203752	AG04450	lung:	fetal
25	chr16:82182319-82182369	ECC-1	luminal epithelium:	n/a
26	chr16:82204046-82204096	HepG2	liver:	n/a
27	chr16:82203996-82204046	H1-hESC	embryonic stem cell:	embryo
28	chr16:82203988-82204038	Jurkat	blood:	n/a
29	chr16:82182319-82182369	PrEC	prostate:	n/a
30	chr16:82204167-82204217	NHBE	bronchial:	n/a
31	chr16:82172885-82172935	MCF10A-Er-Src	breast:	n/a
32	chr16:82204401-82204451	GM12891	blood:	n/a
33	chr16:82203986-82204036	HRCEpiC	kidney:	n/a
34	chr16:82204046-82204096	HAEpiC	amniotic membrane:	n/a
35	chr16:82191819-82191869	HEEpiC	esophagus:	n/a
36	chr16:82204172-82204222	HRPEpiC	eye:	n/a
37	chr16:82204172-82204222	U87	brain:	n/a
38	chr16:82204391-82204441	HRPEpiC	eye:	n/a
39	chr16:82204945-82204995	HEEpiC	esophagus:	n/a
40	chr16:82203702-82203752	HCF	heart:	n/a
41	chr16:82204401-82204451	HAEpiC	amniotic membrane:	n/a
42	chr16:82203986-82204036	HCM	heart:	n/a
43	chr16:82172885-82172935	HRPEpiC	eye:	n/a
44	chr16:82203988-82204038	SAEC	small airway:	n/a
45	chr16:82173104-82173154	GM12878	blood:	n/a
46	chr16:82204046-82204096	HEK293	kidney:	embryo
47	chr16:82204945-82204995	BJ	skin:	n/a
48	chr16:82173104-82173154	HMEC	breast:	n/a
49	chr16:82203702-82203752	Caco-2	colon:	n/a
50	chr16:82182319-82182369	MCF-7	breast:	n/a

(count:66 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr16:82203485..82205710-chr16:82205973..82207992,2	K562	blood:
2	chr16:82177951..82181955-chr16:82182501..82188169,6	MCF-7	breast:
3	chr16:82181923..82184718-chr16:82200148..82202665,2	K562	blood:
4	chr16:82188527..82191409-chr16:82201354..82203921,2	K562	blood:
5	chr16:82185992..82189074-chr16:82193243..82196142,4	MCF-7	breast:
6	chr16:82117283..82118187-chr16:82171594..82172375,3	MCF-7	breast:
7	chr16:82199846..82201653-chr16:82203599..82206559,2	MCF-7	breast:
8	chr16:82170854..82172760-chr16:82203881..82205592,2	K562	blood:
9	chr11:62608799..62609639-chr16:82203591..82204468,2	NB4	blood:
10	chr16:82184093..82185777-chr16:82196617..82198190,2	K562	blood:
11	chr16:82184389..82188133-chr16:82192183..82193900,3	K562	blood:
12	chr16:82203390..82203935-chr19:13262639..13263471,2	Hela-S3	cervix:
13	chr16:82169199..82174282-chr16:82184479..82189945,7	MCF-7	breast:
14	chr16:82169980..82174652-chr16:82184410..82186452,4	MCF-7	breast:
15	chr16:82104751..82105655-chr16:82170497..82171564,4	MCF-7	breast:
16	chr16:82117593..82118221-chr16:82186289..82186795,2	MCF-7	breast:
17	chr16:82171180..82173441-chr16:82201395..82203780,2	MCF-7	breast:
18	chr16:82202012..82204954-chr16:82205071..82206681,2	MCF-7	breast:
19	chr16:82176048..82178919-chr16:82182025..82184797,2	K562	blood:
20	chr16:82185992..82189074-chr16:82193243..82196142,4	MCF-7	breast:
21	chr16:82185928..82187822-chr16:82197235..82199870,2	MCF-7	breast:
22	chr11:64901980..64902550-chr16:82203349..82203968,2	Hela-S3	cervix:
23	chr16:82181923..82184718-chr16:82200148..82202665,2	K562	blood:
24	chr16:82203934..82205687-chr16:82217060..82219188,2	MCF-7	breast:
25	chr16:82203331..82204106-chr20:18488610..18489467,2	Hela-S3	cervix:
26	chr16:82117334..82118246-chr16:82170586..82171478,6	MCF-7	breast:
27	chr16:82196485..82199484-chr16:82202307..82204878,3	MCF-7	breast:
28	chr16:82185306..82186813-chr16:82193802..82195374,2	MCF-7	breast:
29	chr16:82169937..82172835-chr16:82201832..82204154,3	MCF-7	breast:
30	chr16:82204064..82206323-chr16:82214672..82216826,2	K562	blood:
31	chr16:82187699..82189970-chr16:82194493..82196647,2	MCF-7	breast:
32	chr16:82184389..82188133-chr16:82192183..82193900,3	K562	blood:
33	chr16:82184407..82186885-chr16:82187436..82189068,2	K562	blood:
34	chr16:82183487..82186422-chr16:82203517..82206140,2	MCF-7	breast:
35	chr16:82202997..82205982-chr16:82208138..82211154,3	K562	blood:
36	chr16:82207842..82210813-chr16:82220344..82222897,2	MCF-7	breast:
37	chr16:82181355..82183363-chr16:82185760..82189196,3	MCF-7	breast:
38	chr16:82169363..82172355-chr16:82189531..82191592,2	K562	blood:
39	chr16:82211064..82211822-chr16:82263223..82264188,4	MCF-7	breast:
40	chr16:82170213..82174323-chr16:82178396..82183619,5	MCF-7	breast:
41	chr16:82184093..82185777-chr16:82196617..82198190,2	K562	blood:
42	chr16:82192311..82195081-chr16:82198371..82200683,2	K562	blood:
43	chr16:82181355..82183363-chr16:82185760..82189196,3	MCF-7	breast:
44	chr16:82184407..82186885-chr16:82187436..82189068,2	K562	blood:
45	chr16:82185928..82187822-chr16:82197235..82199870,2	MCF-7	breast:
46	chr16:82170684..82171505-chr16:82186323..82186849,2	MCF-7	breast:
47	chr16:82203331..82204094-chr7:94536560..94537463,2	HCT-116	colon:
48	chr16:82203527..82204190-chr2:26101329..26101957,2	HCT-116	colon:
49	chr16:82177951..82181955-chr16:82182501..82188169,6	MCF-7	breast:
50	chr16:82148823..82151078-chr16:82169723..82171440,2	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SDR42E1-1	chr16:82173194-82173236	ENSG00000261235.1
2	lnc-MPHOSPH6-4	chr16:82169316-82169610	NONHSAT143979
3	lnc-HSD17B2-1	chr16:82209037-82209408	ENSG00000261029.1
4	lnc-MPHOSPH6-4	chr16:82170464-82170646	NONHSAT143979
5	lnc-MPHOSPH6-4	chr16:82168723-82168872	NONHSAT143979
6	lnc-HSD17B2-1	chr16:82203901-82203952	ENSG00000261029.1

No data

Variant related genes	Relation type
ENSG00000261029	TF binding region
MPHOSPH6	TF binding region
ENSG00000261235	TF binding region
ENSG00000261029	CpG island
MPHOSPH6	CpG island
ENSG00000261235	CpG island
ENSG00000261235	chromatin interactions
ENSG00000132199	chromatin interactions
ENSG00000135698	chromatin interactions
ENSG00000143970	chromatin interactions
ENSG00000133316	chromatin interactions
ENSG00000117899	chromatin interactions
ENSG00000158528	chromatin interactions
ENSG00000160888	chromatin interactions
ENSG00000261029	chromatin interactions
ENSG00000101310	chromatin interactions
ENSG00000204427	chromatin interactions
ENSG00000162298	chromatin interactions

Extended variants
information (count: 2826 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:2826 , 50 per page) page: 1 2 3 4 5 6 7 ... 57

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs189578138	chr16:82165558-82165559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs570133080	chr16:82165562-82165563	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs537267083	chr16:82165565-82165566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs558818217	chr16:82165569-82165570	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs576950133	chr16:82165570-82165571	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs8047857	chr16:82165577-82165578	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
7	rs552990719	chr16:82165587-82165588	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs180949088	chr16:82165594-82165595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs8047878	chr16:82165621-82165622	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs8046621	chr16:82165631-82165632	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs538435832	chr16:82165634-82165635	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs115439988	chr16:82165662-82165663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs546974861	chr16:82165668-82165669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs552321986	chr16:82165697-82165698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs113062910	chr16:82165707-82165708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs56949747	chr16:82165732-82165733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs8048065	chr16:82165746-82165747	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs532585248	chr16:82165769-82165770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs548113462	chr16:82165779-82165780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs559747173	chr16:82165780-82165781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs60881236	chr16:82165785-82165786	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs374636625	chr16:82165786-82165787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs139286185	chr16:82165790-82165791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs10643257	chr16:82165791-82165792	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs386385244	chr16:82165792-82165793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs397703139	chr16:82165796-82165797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs34107649	chr16:82165812-82165813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs113459474	chr16:82165825-82165826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs186304115	chr16:82165828-82165829	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs191147874	chr16:82165847-82165848	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs552695253	chr16:82165856-82165857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs8047139	chr16:82165928-82165929	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs576737340	chr16:82165941-82165942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs534471804	chr16:82165955-82165956	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs553243115	chr16:82165979-82165980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs183458234	chr16:82165997-82165998	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs58159562	chr16:82166026-82166027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs556565023	chr16:82166033-82166034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs190774964	chr16:82166066-82166067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs545533094	chr16:82166096-82166097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs557563641	chr16:82166105-82166106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs4889461	chr16:82166110-82166111	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs375388392	chr16:82166122-82166123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs183270894	chr16:82166124-82166125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs560019136	chr16:82166144-82166145	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs386793031	chr16:82166162-82166163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs8052913	chr16:82166181-82166182	Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
48	rs563715324	chr16:82166208-82166209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs530925868	chr16:82166217-82166218	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs59902565	chr16:82166222-82166223	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17603634	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	17245344	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21806811	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Lung cancer	18438408	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Autism	21865298	CNVD
Myelofibrosis	22110671	CNVD
Non-small cell lung cancer	21829676	CNVD
Obesity	20622171	CNVD
Cancer	20164920	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16461572	CNVD

Chromatin state (count:1692 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82157000-82191200	Weak transcription	Fetal Brain Male	brain
2	chr16:82160200-82172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr16:82160800-82170600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr16:82160800-82171600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr16:82160800-82171600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr16:82160800-82172200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr16:82160800-82172200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr16:82161000-82172000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr16:82161000-82172000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr16:82161200-82170200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr16:82162800-82167400	Weak transcription	Thymus	Thymus
12	chr16:82163400-82167000	Weak transcription	Dnd41	blood
13	chr16:82164000-82169000	Weak transcription	HepG2	liver
14	chr16:82164200-82179400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr16:82165800-82179200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr16:82166000-82172200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr16:82166600-82168200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr16:82166600-82172800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr16:82166800-82167400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr16:82167000-82167200	Enhancers	Primary T cells from cord blood	blood
21	chr16:82167000-82167200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr16:82167000-82167200	Enhancers	Dnd41	blood
23	chr16:82167000-82167400	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr16:82167000-82168000	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr16:82167000-82168600	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr16:82167000-82168600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr16:82167200-82167400	Enhancers	Primary hematopoietic stem cells	blood
28	chr16:82167200-82167400	Weak transcription	Esophagus	oesophagus
29	chr16:82167200-82167600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr16:82167200-82167600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr16:82167200-82167800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr16:82167200-82167800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr16:82167200-82167800	Enhancers	Fetal Thymus	thymus
34	chr16:82167200-82168000	Flanking Active TSS	Primary T cells from cord blood	blood
35	chr16:82167200-82168000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
36	chr16:82167200-82168200	Enhancers	Primary T cells fromperipheralblood	blood
37	chr16:82167200-82168400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr16:82167200-82168400	Flanking Active TSS	Dnd41	blood
39	chr16:82167200-82168600	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr16:82167200-82168800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr16:82167200-82170200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr16:82167200-82179200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr16:82167400-82167600	Enhancers	Esophagus	oesophagus
44	chr16:82167400-82168000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
45	chr16:82167400-82168000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr16:82167400-82168000	Enhancers	Thymus	Thymus
47	chr16:82167400-82179400	Weak transcription	Primary hematopoietic stem cells	blood
48	chr16:82167600-82168000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
49	chr16:82167600-82168000	Enhancers	Primary T killer memory cells from peripheral blood	blood
50	chr16:82167600-82168400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links