Variant report

Variant	nsv1062776
Chromosome Location	chr19:20818886-21273361
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2922)
CpG islands
(count:2077)
Chromatin interactive
region (count:50)
LncRNA
region (count:28)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:2922 , 50 per page) page: 1 2 3 4 5 6 7 ... 59

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:21203172-21203518	K562	blood:	n/a	n/a
2	ARID3A	chr19:21264926-21265138	K562	blood:	n/a	n/a
3	ARID3A	chr19:21203103-21203905	HepG2	liver:	n/a	n/a
4	ARID3A	chr19:20958836-20959136	HepG2	liver:	n/a	n/a
5	ARID3A	chr19:21264624-21264646	K562	blood:	n/a	n/a
6	ARID3A	chr19:20844355-20844678	HepG2	liver:	n/a	n/a
7	ARID3A	chr19:20847533-20847536	HepG2	liver:	n/a	n/a
8	ARID3A	chr19:21264757-21265267	HepG2	liver:	n/a	n/a
9	ATF1	chr19:20958907-20959195	K562	blood:	n/a	n/a
10	ATF1	chr19:20844226-20844577	K562	blood:	n/a	n/a
11	ATF1	chr19:21147595-21147600	K562	blood:	n/a	n/a
12	ATF1	chr19:21203206-21203570	K562	blood:	n/a	n/a
13	ATF1	chr19:21264742-21265106	K562	blood:	n/a	n/a
14	ATF2	chr19:21211128-21211612	GM12878	blood:	n/a	n/a
15	ATF2	chr19:21211069-21211600	GM12878	blood:	n/a	n/a
16	ATF2	chr19:21203137-21203776	GM12878	blood:	n/a	n/a
17	ATF2	chr19:21264842-21265261	H1-hESC	embryonic stem cell:	n/a	n/a
18	ATF2	chr19:21205758-21206247	GM12878	blood:	n/a	n/a
19	ATF3	chr19:21205907-21206172	K562	blood:	n/a	n/a
20	BACH1	chr19:21203736-21203976	H1-hESC	embryonic stem cell:	n/a	n/a
21	BACH1	chr19:21203338-21203360	K562	blood:	n/a	n/a
22	BACH1	chr19:21106073-21106302	H1-hESC	embryonic stem cell:	n/a	n/a
23	BACH1	chr19:21264961-21264962	K562	blood:	n/a	n/a
24	BATF	chr19:20847409-20847671	GM12878	blood:	n/a	n/a
25	BATF	chr19:21267212-21267440	GM12878	blood:	n/a	n/a
26	BATF	chr19:20834258-20834481	GM12878	blood:	n/a	chr19:20834373-20834384
27	BATF	chr19:21032836-21033000	GM12878	blood:	n/a	chr19:21032899-21032910 chr19:21032904-21032914
28	BATF	chr19:21211727-21212086	GM12878	blood:	n/a	n/a
29	BATF	chr19:21205876-21206186	GM12878	blood:	n/a	n/a
30	BATF	chr19:20970637-20971050	GM12878	blood:	n/a	chr19:20970856-20970867 chr19:20970857-20970867
31	BATF	chr19:21211304-21211567	GM12878	blood:	n/a	chr19:21211457-21211467
32	BATF	chr19:21205859-21206209	GM12878	blood:	n/a	n/a
33	BATF	chr19:21210999-21211662	GM12878	blood:	n/a	chr19:21211457-21211467
34	BATF	chr19:21032838-21032997	GM12878	blood:	n/a	chr19:21032899-21032910 chr19:21032904-21032914
35	BATF	chr19:20933377-20933590	GM12878	blood:	n/a	n/a
36	BATF	chr19:20970646-20970943	GM12878	blood:	n/a	chr19:20970856-20970867 chr19:20970857-20970867
37	BCL11A	chr19:21205905-21206089	GM12878	blood:	n/a	n/a
38	BCL11A	chr19:20970637-20970914	GM12878	blood:	n/a	chr19:20970859-20970868 chr19:20970860-20970869
39	BCL11A	chr19:21205878-21206151	GM12878	blood:	n/a	n/a
40	BCL11A	chr19:21210944-21211891	GM12878	blood:	n/a	chr19:21211460-21211469 chr19:21211459-21211468
41	BCL11A	chr19:21211293-21211575	GM12878	blood:	n/a	chr19:21211460-21211469 chr19:21211459-21211468
42	BCL3	chr19:21211314-21211625	GM12878	blood:	n/a	chr19:21211460-21211469 chr19:21211459-21211468
43	BCL3	chr19:21205826-21206186	GM12878	blood:	n/a	n/a
44	BCLAF1	chr19:21203409-21203891	GM12878	blood:	n/a	n/a
45	BCLAF1	chr19:21203607-21204001	GM12878	blood:	n/a	n/a
46	BCLAF1	chr19:21211186-21211620	GM12878	blood:	n/a	chr19:21211460-21211469 chr19:21211459-21211468
47	BCLAF1	chr19:21106064-21106734	GM12878	blood:	n/a	n/a
48	BHLHE40	chr19:21211136-21211643	GM12878	blood:	n/a	n/a
49	BHLHE40	chr19:21264737-21264982	GM12878	blood:	n/a	n/a
50	BHLHE40	chr19:20958960-20959285	GM12878	blood:	n/a	n/a

(count:2077 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:21203417-21203467	SK-N-SH	brain:	n/a
2	chr19:21203723-21203773	AG10803	skin:	n/a
3	chr19:20844070-20844120	GM12878	blood:	n/a
4	chr19:21203417-21203467	SK-N-SH	brain:	n/a
5	chr19:21203723-21203773	AG10803	skin:	n/a
6	chr19:20844070-20844120	GM12878	blood:	n/a
7	chr19:21203417-21203467	Hela-S3	cervix:	n/a
8	chr19:20959492-20959542	NH-A	brain:	n/a
9	chr19:21262035-21262085	SAEC	small airway:	n/a
10	chr19:20959091-20959141	HepG2	liver:	n/a
11	chr19:21203493-21203543	AG09309	skin:	n/a
12	chr19:20845590-20845640	HNPCEpiC	eye:	n/a
13	chr19:20959100-20959150	AG04450	lung:	fetal
14	chr19:20844070-20844120	CMK	blood:	n/a
15	chr19:21203359-21203409	HMEC	breast:	n/a
16	chr19:21264371-21264421	SAEC	small airway:	n/a
17	chr19:21106370-21106420	GM12892	blood:	n/a
18	chr19:20844070-20844120	NH-A	brain:	n/a
19	chr19:21106053-21106103	AG09319	gingival:	n/a
20	chr19:21105452-21105502	NB4	blood:	n/a
21	chr19:21106043-21106093	HCM	heart:	n/a
22	chr19:21240978-21241028	MCF10A-Er-Src	breast:	n/a
23	chr19:21264896-21264946	HepG2	liver:	n/a
24	chr19:21264982-21265032	CMK	blood:	n/a
25	chr19:21203493-21203543	H1-hESC	embryonic stem cell:	embryo
26	chr19:20845590-20845640	A549	lung:	n/a
27	chr19:21106027-21106077	PFSK-1	brain:	n/a
28	chr19:21264371-21264421	SKMC	muscle:	n/a
29	chr19:21203417-21203467	HCPEpiC	choroid plexus:	n/a
30	chr19:21264131-21264181	LNCaP	prostate:	n/a
31	chr19:20844070-20844120	GM19239	blood:	n/a
32	chr19:20844070-20844120	HPAEpiC	pulmonary alveolar:	n/a
33	chr19:21240978-21241028	HIPEpiC	eye:	n/a
34	chr19:21106027-21106077	GM12891	blood:	n/a
35	chr19:21265264-21265314	NH-A	brain:	n/a
36	chr19:20844422-20844472	GM12878	blood:	n/a
37	chr19:21106053-21106103	HAEpiC	amniotic membrane:	n/a
38	chr19:21262035-21262085	HRPEpiC	eye:	n/a
39	chr19:21262035-21262085	AG09309	skin:	n/a
40	chr19:21240978-21241028	HCM	heart:	n/a
41	chr19:21106043-21106093	RPTEC	kidney:	n/a
42	chr19:20959492-20959542	HIPEpiC	eye:	n/a
43	chr19:21105452-21105502	MCF10A-Er-Src	breast:	n/a
44	chr19:21105452-21105502	U87	brain:	n/a
45	chr19:20844070-20844120	AG09319	gingival:	n/a
46	chr19:21203417-21203467	Jurkat	blood:	n/a
47	chr19:21106016-21106066	PrEC	prostate:	n/a
48	chr19:21203493-21203543	SK-N-SH_RA	brain:	n/a
49	chr19:20959091-20959141	NHDF-neo	bronchial:	n/a
50	chr19:21265421-21265471	Jurkat	blood:	n/a

(count:50 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:21230722..21233642-chr19:21264436..21267129,2	K562	blood:
2	chr17:41381905..41383742-chr19:21236269..21237789,3	K562	blood:
3	chr19:21086946..21088802-chr19:21210415..21213328,2	MCF-7	breast:
4	chr19:21267358..21270716-chr19:21272495..21275149,3	MCF-7	breast:
5	chr19:21264733..21265247-chr19:21541544..21542206,2	NB4	blood:
6	chr19:21246343..21248444-chr19:21263959..21266875,2	K562	blood:
7	chr19:20958957..20961587-chr19:20963643..20966546,2	K562	blood:
8	chr19:20835189..20837977-chr19:20841442..20843188,2	K562	blood:
9	chr19:21264715..21265215-chrX:53710755..53711257,2	NB4	blood:
10	chr19:21217901..21220893-chr19:21222403..21225000,3	K562	blood:
11	chr17:57969004..57971186-chr19:21264179..21266125,2	MCF-7	breast:
12	chr19:20835290..20838224-chr19:20839365..20841081,2	K562	blood:
13	chr19:21264288..21266539-chr19:21271478..21272991,2	MCF-7	breast:
14	chr19:21203269..21205162-chr19:21263863..21266449,2	MCF-7	breast:
15	chr19:21267358..21270716-chr19:21272495..21275149,3	MCF-7	breast:
16	chr17:41381927..41383535-chr19:21236269..21237789,2	MCF-7	breast:
17	chr19:20831482..20833710-chr19:20840893..20843099,3	K562	blood:
18	chr19:21097861..21100856-chr19:21103633..21106940,3	MCF-7	breast:
19	chr19:21268213..21268800-chr19:21327512..21328424,2	MCF-7	breast:
20	chr19:20835189..20837977-chr19:20841442..20843188,2	K562	blood:
21	chr19:21260635..21262427-chr19:21263416..21266258,2	K562	blood:
22	chr19:21238270..21239771-chr19:21264302..21266943,2	K562	blood:
23	chr19:21051172..21052986-chr19:21053944..21056414,2	MCF-7	breast:
24	chr19:21238270..21239771-chr19:21264302..21266943,2	K562	blood:
25	chr19:21236568..21238876-chr19:21241377..21243478,2	K562	blood:
26	chr19:21268071..21270842-chr19:21283139..21285114,2	K562	blood:
27	chr19:21086946..21088802-chr19:21210415..21213328,2	MCF-7	breast:
28	chr19:21204714..21207211-chr19:21209787..21213344,3	K562	blood:
29	chr19:21246343..21248444-chr19:21263959..21266875,2	K562	blood:
30	chr19:21263410..21266735-chr19:21269462..21274138,5	K562	blood:
31	chr19:20957022..20960457-chr19:20966415..20968798,3	K562	blood:
32	chr19:21203226..21204874-chr19:21207837..21209473,2	MCF-7	breast:
33	chr17:41398648..41400647-chr19:21234769..21236289,5	MCF-7	breast:
34	chr19:21264345..21264942-chr7:89975847..89976737,2	Hela-S3	cervix:
35	chr19:21183047..21184669-chr19:21201811..21203556,2	MCF-7	breast:
36	chr19:21051172..21052986-chr19:21053944..21056414,2	MCF-7	breast:
37	chr19:21214855..21215355-chr5:68664827..68665328,2	NB4	blood:
38	chr19:21260366..21262135-chr19:21263416..21265253,2	K562	blood:
39	chr19:20831482..20833710-chr19:20840893..20843099,3	K562	blood:
40	chr19:21203226..21204874-chr19:21207837..21209473,2	MCF-7	breast:
41	chr19:21124387..21126595-chr19:21129898..21132890,2	MCF-7	breast:
42	chr19:21257717..21259573-chr19:21372943..21374798,2	K562	blood:
43	chr19:21124387..21126595-chr19:21129898..21132890,2	MCF-7	breast:
44	chr19:21264764..21267719-chr19:21267936..21273188,6	K562	blood:
45	chr19:21215243..21217384-chr19:21265595..21267237,2	K562	blood:
46	chr19:21217901..21220893-chr19:21222403..21225000,3	K562	blood:
47	chr19:21204714..21207211-chr19:21209787..21213344,3	K562	blood:
48	chr19:20957022..20960457-chr19:20966415..20968798,3	K562	blood:
49	chr19:21203269..21205162-chr19:21263863..21266449,2	MCF-7	breast:
50	chr19:20835290..20838224-chr19:20839365..20841081,2	K562	blood:

(count:28 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF85-7	chr19:20957538-20959081	l_1659_chr19:20946829-20959081_testes
2	lnc-ZNF85-7	chr19:20946830-20947163	l_1659_chr19:20946829-20959081_testes
3	lnc-ZNF85-1	chr19:21155029-21155323	XLOC_013005
4	lnc-ZNF626-1	chr19:20828490-20828585	ENSG00000269110.1
5	lnc-ZNF85-1	chr19:21165698-21166016	ENSG00000268326.1
6	lnc-ZNF626-5	chr19:21154460-21154697	NONHSAT063678
7	lnc-ZNF626-1	chr19:20844250-20844389	ENSG00000269110.1
8	lnc-ZNF85-1	chr19:21165698-21167734	XLOC_013005
9	lnc-ZNF626-5	chr19:21154184-21154294	NONHSAT063678
10	lnc-ZNF626-4	chr19:21021321-21021373	NONHSAT063675
11	lnc-ZNF85-1	chr19:21155068-21155323	ENSG00000268326.1
12	lnc-ZNF714-1	chr19:21264971-21265154	NONHSAT063683
13	lnc-ZNF626-4	chr19:21030087-21030223	NONHSAT063675
14	lnc-ZNF626-5	chr19:21149318-21149428	NONHSAT063678
15	lnc-ZNF85-2	chr19:21004401-21005077	ENSG00000250870
16	lnc-ZNF430-1	chr19:21246730-21247067	NONHSAT063682
17	lnc-ZNF85-4	chr19:21116830-21116956	NR_045830
18	lnc-ZNF85-4	chr19:21106059-21106222	NR_045830
19	lnc-ZNF85-8	chr19:20941246-20941758	NONHSAT063671
20	lnc-ZNF85-4	chr19:21125607-21126783	NR_045830
21	lnc-ZNF85-4	chr19:21117755-21117853	NR_045830
22	lnc-ZNF626-4	chr19:21022210-21022336	NONHSAT063675
23	lnc-ZNF85-3	chr19:20845800-20845837	XLOC_013004
24	lnc-ZNF626-3	chr19:20967402-20967958	NONHSAT063672
25	lnc-ZNF430-2	chr19:21266826-21266875	NONHSAT063684
26	lnc-ZNF626-1	chr19:20829085-20829211	ENSG00000269110.1
27	lnc-ZNF85-2	chr19:20997935-21000305	ENSG00000250870
28	lnc-ZNF85-3	chr19:20857719-20857891	XLOC_013004

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	ZNF85	hsa-miR-26b-5p	chr19:21126672-21126693

Variant related genes	Relation type
VN1R79P	TF binding region
ENSG00000269147	TF binding region
ENSG00000269373	TF binding region
ENSG00000271598	TF binding region
VN1R80P	TF binding region
ENSG00000269040	TF binding region
ZNF85	TF binding region
ENSG00000268326	TF binding region
ENSG00000266156	TF binding region
KRT18P40	TF binding region
ZNF626	TF binding region
ENSG00000269110	TF binding region
ZNF66	TF binding region
ZNF714	TF binding region
ENSG00000265650	TF binding region
ENSG00000268416	TF binding region
ZNF430	TF binding region
ENSG00000269779	TF binding region
VN1R79P	CpG island
ENSG00000269147	CpG island
ENSG00000269373	CpG island
ENSG00000271598	CpG island
VN1R80P	CpG island
ENSG00000269040	CpG island
ZNF85	CpG island
ENSG00000268326	CpG island
ENSG00000266156	CpG island
KRT18P40	CpG island
ZNF626	CpG island
ENSG00000269110	CpG island
ZNF66	CpG island
ZNF714	CpG island
ENSG00000265650	CpG island
ENSG00000268416	CpG island
ZNF430	CpG island
ENSG00000269779	CpG island
ENSG00000268598	chromatin interactions
ENSG00000105750	chromatin interactions
ENSG00000108423	chromatin interactions
ENSG00000236383	chromatin interactions
ENSG00000118620	chromatin interactions
ENSG00000152942	chromatin interactions
ENSG00000269040	chromatin interactions
ENSG00000160352	chromatin interactions
ENSG00000086758	chromatin interactions
ENSG00000160229	chromatin interactions
ENSG00000085231	chromatin interactions
ENSG00000108443	chromatin interactions
ENSG00000105793	chromatin interactions
ENSG00000265650	chromatin interactions
ENSG00000172687	chromatin interactions
ENSG00000271598	chromatin interactions
RAB5A	miRNA target sites
WDR33	miRNA target sites
CCNE2	miRNA target sites
WNK1	miRNA target sites
MATR3	miRNA target sites
OAZ1	miRNA target sites

Extended variants
information (count: 14518 )
Associated
traits (count: 45 )

Variant overlapped rSNPs/rCNVs (count:14518 , 50 per page) page: 1 2 3 4 5 6 7 ... 291

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10404964	chr19:20818895-20818896	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs144185558	chr19:20818915-20818916	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs576833241	chr19:20818942-20818943	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs140501715	chr19:20818948-20818949	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs79235419	chr19:20818958-20818959	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs4808257	chr19:20818989-20818990	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs182885315	chr19:20819000-20819001	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs537159938	chr19:20819005-20819006	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs557472657	chr19:20819039-20819040	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs577168166	chr19:20819076-20819077	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs11670612	chr19:20819099-20819100	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs576458424	chr19:20819134-20819135	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs144439594	chr19:20819155-20819156	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs561935205	chr19:20819156-20819157	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs573193771	chr19:20819174-20819175	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs550487964	chr19:20819192-20819193	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs188436093	chr19:20819198-20819199	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs561871598	chr19:20819238-20819239	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs10405703	chr19:20819243-20819244	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
20	rs539740313	chr19:20819247-20819248	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs564333336	chr19:20819264-20819265	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs559032557	chr19:20819281-20819282	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs193224401	chr19:20819304-20819305	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs183781786	chr19:20819315-20819316	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs532775510	chr19:20819350-20819351	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs189184805	chr19:20819366-20819367	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs566036088	chr19:20819433-20819434	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs77393882	chr19:20819452-20819453	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs191237173	chr19:20819479-20819480	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs183772758	chr19:20819494-20819495	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs367809599	chr19:20819500-20819501	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs568553102	chr19:20819546-20819547	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs368612319	chr19:20819552-20819553	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs188351970	chr19:20819553-20819554	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs80026436	chr19:20819565-20819566	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs78140571	chr19:20819566-20819567	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs74733073	chr19:20819568-20819569	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs139522012	chr19:20819655-20819656	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs142572936	chr19:20819693-20819694	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs553403718	chr19:20819708-20819709	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs573132518	chr19:20819711-20819712	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs542134193	chr19:20819717-20819718	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs150921461	chr19:20819723-20819724	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs191732327	chr19:20819737-20819738	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs544429426	chr19:20819746-20819747	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs185156252	chr19:20819753-20819754	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs533069965	chr19:20819757-20819758	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs11667375	chr19:20819764-20819765	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
49	rs559727791	chr19:20819784-20819785	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs115358525	chr19:20819789-20819790	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:45)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Melanoma	20877625	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Schizophrenia	20967226	CNVD

Chromatin state (count:6850 , 50 per page) page: 1 2 3 4 5 6 7 ... 137

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:20812400-20827200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:20814600-20842200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:20814800-20820200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr19:20815000-20825400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr19:20815000-20827400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr19:20815000-20827400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr19:20815000-20843400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr19:20815200-20843200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:20815400-20821000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr19:20815800-20820200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr19:20815800-20827200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
12	chr19:20816000-20820200	ZNF genes & repeats	Placenta	Placenta
13	chr19:20816000-20822600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr19:20816200-20819000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
15	chr19:20816200-20819800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
16	chr19:20816200-20820000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
17	chr19:20816200-20820000	ZNF genes & repeats	Colon Smooth Muscle	Colon
18	chr19:20816200-20820200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
19	chr19:20816200-20820200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
20	chr19:20816200-20820200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
21	chr19:20816200-20820200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr19:20816200-20821000	ZNF genes & repeats	Fetal Muscle Leg	muscle
23	chr19:20816200-20822600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr19:20816200-20822600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
25	chr19:20816200-20822600	ZNF genes & repeats	Adipose Nuclei	Adipose
26	chr19:20816200-20822600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
27	chr19:20816200-20822800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr19:20816200-20827000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr19:20816200-20827200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
30	chr19:20816200-20827200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
31	chr19:20816200-20827200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
32	chr19:20816200-20827400	ZNF genes & repeats	Fetal Lung	lung
33	chr19:20816200-20827600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr19:20816200-20828200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr19:20816200-20831000	ZNF genes & repeats	Liver	Liver
36	chr19:20816200-20843000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
37	chr19:20816400-20819000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
38	chr19:20816400-20819800	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
39	chr19:20816400-20820000	ZNF genes & repeats	Primary B cells from cord blood	blood
40	chr19:20816400-20820200	ZNF genes & repeats	Primary T cells from cord blood	blood
41	chr19:20816400-20820200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
42	chr19:20816400-20820200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
43	chr19:20816400-20820200	ZNF genes & repeats	Brain Germinal Matrix	brain
44	chr19:20816400-20820400	ZNF genes & repeats	Fetal Brain Female	brain
45	chr19:20816400-20821000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
46	chr19:20816400-20825600	ZNF genes & repeats	Fetal Kidney	kidney
47	chr19:20816400-20842600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
48	chr19:20816600-20819000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr19:20816600-20820200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
50	chr19:20816800-20819600	Strong transcription	Osteobl	bone

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