Variant report
Variant | nsv1062819 |
---|---|
Chromosome Location | chr16:32510812-33097410 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:4269)
- CpG islands (count:2260)
- Chromatin interactive region (count:5)
- LncRNA region (count:47)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr16:32547652-32548159 | K562 | blood: | n/a | n/a |
2 | ARID3A | chr16:32817100-32817669 | HepG2 | liver: | n/a | n/a |
3 | ARID3A | chr16:32590243-32590613 | K562 | blood: | n/a | n/a |
4 | ARID3A | chr16:32657798-32657972 | HepG2 | liver: | n/a | n/a |
5 | ARID3A | chr16:32655940-32657281 | HepG2 | liver: | n/a | n/a |
6 | ARID3A | chr16:32876710-32876890 | HepG2 | liver: | n/a | n/a |
7 | ARID3A | chr16:32817496-32817662 | K562 | blood: | n/a | n/a |
8 | ARID3A | chr16:32818363-32818754 | HepG2 | liver: | n/a | n/a |
9 | ATF1 | chr16:32550785-32551178 | K562 | blood: | n/a | n/a |
10 | ATF1 | chr16:32515726-32516011 | K562 | blood: | n/a | n/a |
11 | ATF1 | chr16:32873309-32873509 | K562 | blood: | n/a | n/a |
12 | ATF1 | chr16:32547497-32547620 | K562 | blood: | n/a | n/a |
13 | ATF1 | chr16:32568174-32568349 | K562 | blood: | n/a | n/a |
14 | ATF1 | chr16:32521319-32521519 | K562 | blood: | n/a | n/a |
15 | ATF1 | chr16:32526924-32527721 | K562 | blood: | n/a | n/a |
16 | ATF1 | chr16:32559923-32560294 | K562 | blood: | n/a | n/a |
17 | ATF1 | chr16:32583782-32583972 | K562 | blood: | n/a | n/a |
18 | ATF1 | chr16:32832855-32832989 | K562 | blood: | n/a | n/a |
19 | ATF1 | chr16:32558594-32558903 | K562 | blood: | n/a | n/a |
20 | ATF1 | chr16:32549843-32550009 | K562 | blood: | n/a | n/a |
21 | ATF3 | chr16:32909214-32909368 | K562 | blood: | n/a | n/a |
22 | ATF3 | chr16:32993758-32993903 | K562 | blood: | n/a | n/a |
23 | ATF3 | chr16:32876765-32876921 | K562 | blood: | n/a | n/a |
24 | BACH1 | chr16:32553830-32554374 | K562 | blood: | n/a | n/a |
25 | BACH1 | chr16:32531668-32531907 | K562 | blood: | n/a | n/a |
26 | BACH1 | chr16:32639174-32639436 | H1-hESC | embryonic stem cell: | n/a | n/a |
27 | BACH1 | chr16:32590237-32590618 | K562 | blood: | n/a | n/a |
28 | BATF | chr16:33042934-33043504 | GM12878 | blood: | n/a | n/a |
29 | BATF | chr16:32799795-32800035 | GM12878 | blood: | n/a | n/a |
30 | BATF | chr16:33051640-33051829 | GM12878 | blood: | n/a | n/a |
31 | BATF | chr16:33002463-33002715 | GM12878 | blood: | n/a | n/a |
32 | BATF | chr16:32727057-32727270 | GM12878 | blood: | n/a | n/a |
33 | BATF | chr16:33087692-33087910 | GM12878 | blood: | n/a | n/a |
34 | BATF | chr16:33044181-33044885 | GM12878 | blood: | n/a | chr16:33044727-33044738 |
35 | BATF | chr16:33042313-33042791 | GM12878 | blood: | n/a | n/a |
36 | BATF | chr16:33020846-33021096 | GM12878 | blood: | n/a | n/a |
37 | BATF | chr16:33043855-33044053 | GM12878 | blood: | n/a | n/a |
38 | BATF | chr16:32652782-32652951 | GM12878 | blood: | n/a | n/a |
39 | BATF | chr16:32846943-32847213 | GM12878 | blood: | n/a | n/a |
40 | BATF | chr16:33087718-33087908 | GM12878 | blood: | n/a | n/a |
41 | BATF | chr16:32909165-32909547 | GM12878 | blood: | n/a | n/a |
42 | BATF | chr16:33092972-33093212 | GM12878 | blood: | n/a | n/a |
43 | BATF | chr16:33052311-33052561 | GM12878 | blood: | n/a | n/a |
44 | BATF | chr16:33052317-33052590 | GM12878 | blood: | n/a | n/a |
45 | BATF | chr16:33041862-33042137 | GM12878 | blood: | n/a | n/a |
46 | BATF | chr16:33082292-33082557 | GM12878 | blood: | n/a | n/a |
47 | BATF | chr16:33046034-33046402 | GM12878 | blood: | n/a | n/a |
48 | BATF | chr16:32848099-32848439 | GM12878 | blood: | n/a | n/a |
49 | BATF | chr16:33044491-33044914 | GM12878 | blood: | n/a | chr16:33044727-33044738 |
50 | BATF | chr16:33048704-33048907 | GM12878 | blood: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr16:33038922-33038972 | NH-A | brain: | n/a |
2 | chr16:32822612-32822662 | HCF | heart: | n/a |
3 | chr16:32857007-32857057 | HRPEpiC | eye: | n/a |
4 | chr16:33038922-33038972 | NH-A | brain: | n/a |
5 | chr16:32822612-32822662 | HCF | heart: | n/a |
6 | chr16:32857007-32857057 | HRPEpiC | eye: | n/a |
7 | chr16:32936664-32936714 | HL-60 | blood: | n/a |
8 | chr16:32822480-32822530 | HNPCEpiC | eye: | n/a |
9 | chr16:32936895-32936945 | ECC-1 | luminal epithelium: | n/a |
10 | chr16:32823000-32823050 | SK-N-SH | brain: | n/a |
11 | chr16:33039897-33039947 | NB4 | blood: | n/a |
12 | chr16:32857551-32857601 | MCF-7 | breast: | n/a |
13 | chr16:32858241-32858291 | HPAEpiC | pulmonary alveolar: | n/a |
14 | chr16:33006163-33006213 | RPTEC | kidney: | n/a |
15 | chr16:33006163-33006213 | HUVEC | blood vessel: | n/a |
16 | chr16:32895392-32895442 | Caco-2 | colon: | n/a |
17 | chr16:32820218-32820268 | Jurkat | blood: | n/a |
18 | chr16:32853952-32854002 | LNCaP | prostate: | n/a |
19 | chr16:32822392-32822442 | SKMC | muscle: | n/a |
20 | chr16:32599417-32599467 | GM06990 | blood: | n/a |
21 | chr16:32937057-32937107 | HIPEpiC | eye: | n/a |
22 | chr16:32820218-32820268 | HCF | heart: | n/a |
23 | chr16:32822392-32822442 | HCF | heart: | n/a |
24 | chr16:32858241-32858291 | BJ | skin: | n/a |
25 | chr16:33070551-33070601 | SK-N-SH_RA | brain: | n/a |
26 | chr16:32857923-32857973 | NB4 | blood: | n/a |
27 | chr16:32599433-32599483 | HCPEpiC | choroid plexus: | n/a |
28 | chr16:32823289-32823339 | T-47D | breast: | n/a |
29 | chr16:32940983-32941033 | NHDF-neo | bronchial: | n/a |
30 | chr16:32940983-32941033 | PrEC | prostate: | n/a |
31 | chr16:32940983-32941033 | GM12878 | blood: | n/a |
32 | chr16:33071657-33071707 | ovcar-3 | ovarian: | n/a |
33 | chr16:32940983-32941033 | SAEC | small airway: | n/a |
34 | chr16:33040206-33040256 | AG10803 | skin: | n/a |
35 | chr16:32822392-32822442 | SK-N-MC | brain: | n/a |
36 | chr16:32822480-32822530 | LNCaP | prostate: | n/a |
37 | chr16:32857007-32857057 | Hepatocyte | liver: | n/a |
38 | chr16:32857347-32857397 | GM12878 | blood: | n/a |
39 | chr16:33071657-33071707 | U87 | brain: | n/a |
40 | chr16:33070551-33070601 | K562 | blood: | n/a |
41 | chr16:32659887-32659937 | HUVEC | blood vessel: | n/a |
42 | chr16:32599417-32599467 | BE2_C | brain: | n/a |
43 | chr16:32937057-32937107 | Jurkat | blood: | n/a |
44 | chr16:32823584-32823634 | HCM | heart: | n/a |
45 | chr16:33038657-33038707 | ovcar-3 | ovarian: | n/a |
46 | chr16:33006163-33006213 | SKMC | muscle: | n/a |
47 | chr16:33070551-33070601 | AoSMC | blood vessel: | n/a |
48 | chr16:33044270-33044320 | HIPEpiC | eye: | n/a |
49 | chr16:32822612-32822662 | ProgFib | skin: | n/a |
50 | chr16:32822612-32822662 | HRPEpiC | eye: | n/a |
(count:5 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr16:32951293..32951850-chr16:33618657..33619267,2 | MCF-7 | breast: | |
2 | chr16:32993835..32994354-chr16:33619041..33619624,2 | MCF-7 | breast: | |
3 | chr16:32876653..32877208-chr16:33618895..33619446,2 | MCF-7 | breast: | |
4 | chr16:32876380..32877212-chr16:32951315..32951834,2 | MCF-7 | breast: | |
5 | chr16:32876380..32877212-chr16:32951315..32951834,2 | MCF-7 | breast: |
(count:47 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-RP11-1277H1.1.1-4 | chr16:32899139-32900195 | ENSG00000214614.2 |
2 | lnc-RP11-1277H1.1.1-9 | chr16:32989782-32989827 | NONHSAT142058 |
3 | lnc-AC133485.1.1-2 | chr16:32626742-32626953 | XLOC_011694 |
4 | lnc-AC133485.1.1-4 | chr16:32686358-32686427 | ENSG00000260974.1 |
5 | lnc-AC133485.1.1-3 | chr16:32676974-32677014 | ENSG00000260311.1 |
6 | lnc-AC133485.1.1-3 | chr16:32661637-32661722 | ENSG00000261569.1 |
7 | lnc-RP11-1277H1.1.1-4 | chr16:32898658-32898880 | ENSG00000214614.2 |
8 | lnc-RP11-1277H1.1.1-11 | chr16:32926544-32926857 | NONHSAT142052 |
9 | lnc-RP11-1277H1.1.1-3 | chr16:33007600-33008091 | ENSG00000260921.1 |
10 | lnc-AC133485.1.1-2 | chr16:32613844-32613953 | NONHSAT142021 |
11 | lnc-TP53TG3-5 | chr16:33054930-33055459 | ENSG00000260141.1 |
12 | lnc-RP11-1277H1.1.1-11 | chr16:32926395-32926440 | NONHSAT142052 |
13 | lnc-AC133485.1.1-2 | chr16:32616227-32616285 | NONHSAT142021 |
14 | lnc-AC133485.1.1-2 | chr16:32626903-32626960 | NONHSAT142022 |
15 | lnc-AC133485.1.1-2 | chr16:32626088-32626324 | XLOC_011694 |
16 | lnc-AC133485.1.1-3 | chr16:32661076-32661211 | ENSG00000261569.1 |
17 | lnc-AC133485.1.1-2 | chr16:32619006-32619076 | NONHSAT142022 |
18 | lnc-RP11-1277H1.1.1-9 | chr16:32989910-32990212 | NONHSAT142058 |
19 | lnc-AC133485.1.1-3 | chr16:32661463-32661540 | ENSG00000261569.1 |
20 | lnc-AC133485.1.1-2 | chr16:32611620-32611754 | NONHSAT142021 |
21 | lnc-AC133485.1.1-3 | chr16:32660514-32660649 | ENSG00000261569.1 |
22 | lnc-RP11-1277H1.1.1-4 | chr16:32898658-32899949 | ENSG00000214614.2 |
23 | lnc-AC133485.1.1-4 | chr16:32689961-32690152 | ENSG00000260974.1 |
24 | lnc-RP11-1277H1.1.1-4 | chr16:32896515-32896578 | ENSG00000214614.2 |
25 | lnc-RP11-1277H1.1.1-4 | chr16:32897547-32898093 | ENSG00000214614.2 |
26 | lnc-TP53TG3-1 | chr16:32752331-32752415 | ENSG00000260845.1 |
27 | lnc-AC133485.1.1-3 | chr16:32677470-32677854 | ENSG00000260311.1 |
28 | lnc-RP11-1277H1.1.1-4 | chr16:32897778-32897912 | ENSG00000214614.2 |
29 | lnc-AC133485.1.1-2 | chr16:32619515-32619547 | NONHSAT142021 |
30 | lnc-RP11-1277H1.1.1-4 | chr16:32897796-32898008 | ENSG00000214614.2 |
31 | lnc-AC133485.1.1-2 | chr16:32618849-32619005 | NONHSAT142021 |
32 | lnc-TP53TG3-11 | chr16:32751296-32751487 | NONHSAT142041 |
33 | lnc-RP11-1277H1.1.1-4 | chr16:32898371-32898495 | ENSG00000214614.2 |
34 | lnc-AC133485.1.1-2 | chr16:32616227-32616285 | NONHSAT142022 |
35 | lnc-RP11-1277H1.1.1-4 | chr16:32898658-32898850 | ENSG00000214614.2 |
36 | lnc-TP53TG3-1 | chr16:32747230-32748010 | ENSG00000260845.1 |
37 | lnc-AC133485.1.1-2 | chr16:32626742-32626807 | NONHSAT142022 |
38 | lnc-TP53TG3-11 | chr16:32750948-32750981 | NONHSAT142041 |
39 | lnc-AC133485.1.1-3 | chr16:32661637-32661722 | ENSG00000261569.1 |
40 | lnc-AC133485.1.1-2 | chr16:32626287-32626324 | NONHSAT142022 |
41 | lnc-AC133485.1.1-2 | chr16:32613896-32614018 | NONHSAT142022 |
42 | lnc-RP11-1277H1.1.1-3 | chr16:33007112-33007188 | ENSG00000260921.1 |
43 | lnc-AC133485.1.1-3 | chr16:32674902-32675277 | ENSG00000261569.1 |
44 | lnc-AC133485.1.1-2 | chr16:32619515-32619545 | NONHSAT142022 |
45 | lnc-RP11-1277H1.1.1-3 | chr16:33006858-33006938 | ENSG00000260921.1 |
46 | lnc-TP53TG3-17 | chr16:32943089-32943890 | NONHSAT142053 |
47 | lnc-AC133485.1.1-2 | chr16:32616957-32617035 | NONHSAT142021 |
No data |
No data |
Variant related genes | Relation type |
---|---|
IGHV3OR16-8 | TF binding region |
ENSG00000260864 | TF binding region |
IGHV2OR16-5 | TF binding region |
ENSG00000261263 | TF binding region |
TP53TG3 | TF binding region |
ENSG00000259966 | TF binding region |
ENSG00000261108 | TF binding region |
ENSG00000260610 | TF binding region |
ENSG00000260158 | TF binding region |
IGHV3OR16-15 | TF binding region |
ENSG00000261719 | TF binding region |
ENSG00000261391 | TF binding region |
ENSG00000260974 | TF binding region |
ENSG00000261111 | TF binding region |
ENSG00000214614 | TF binding region |
IGHV3OR16-10 | TF binding region |
ENSG00000260047 | TF binding region |
SLC6A10P | TF binding region |
ENSG00000261259 | TF binding region |
HERC2P5 | TF binding region |
IGHV1OR16-2 | TF binding region |
IGHV3OR16-6 | TF binding region |
ENSG00000261569 | TF binding region |
ENSG00000262187 | TF binding region |
ENSG00000260845 | TF binding region |
ENSG00000260921 | TF binding region |
ENSG00000259934 | TF binding region |
ENSG00000260900 | TF binding region |
IGHV1OR16-4 | TF binding region |
ENSG00000260311 | TF binding region |
IGHV3OR16-8 | CpG island |
ENSG00000260864 | CpG island |
IGHV2OR16-5 | CpG island |
ENSG00000261263 | CpG island |
TP53TG3 | CpG island |
ENSG00000259966 | CpG island |
ENSG00000261108 | CpG island |
ENSG00000260610 | CpG island |
ENSG00000260158 | CpG island |
IGHV3OR16-15 | CpG island |
ENSG00000261719 | CpG island |
ENSG00000261391 | CpG island |
ENSG00000260974 | CpG island |
ENSG00000261111 | CpG island |
ENSG00000214614 | CpG island |
IGHV3OR16-10 | CpG island |
ENSG00000260047 | CpG island |
SLC6A10P | CpG island |
ENSG00000261259 | CpG island |
HERC2P5 | CpG island |
IGHV1OR16-2 | CpG island |
IGHV3OR16-6 | CpG island |
ENSG00000261569 | CpG island |
ENSG00000262187 | CpG island |
ENSG00000260845 | CpG island |
ENSG00000260921 | CpG island |
ENSG00000259934 | CpG island |
ENSG00000260900 | CpG island |
IGHV1OR16-4 | CpG island |
ENSG00000260311 | CpG island |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs141751990 | chr16:32511214-32511215 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
2 | rs556878444 | chr16:32511242-32511243 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
3 | rs575155527 | chr16:32511256-32511257 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
4 | rs367719683 | chr16:32511272-32511273 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
5 | rs560722351 | chr16:32511290-32511291 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
6 | rs182266247 | chr16:32511295-32511296 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
7 | rs539987931 | chr16:32511303-32511304 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
8 | rs184888605 | chr16:32511351-32511352 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
9 | rs532054365 | chr16:32511375-32511376 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
10 | rs62043434 | chr16:32511416-32511417 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
11 | rs1587993 | chr16:32511482-32511483 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
12 | rs138825037 | chr16:32511485-32511486 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
13 | rs191452788 | chr16:32511512-32511513 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
14 | rs548817690 | chr16:32511521-32511522 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
15 | rs567105439 | chr16:32511550-32511551 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
16 | rs183172671 | chr16:32511619-32511620 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
17 | rs534384713 | chr16:32511623-32511624 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
18 | rs558833834 | chr16:32511640-32511641 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
19 | rs570915674 | chr16:32511676-32511677 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
20 | rs28821478 | chr16:32511699-32511700 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
21 | rs111358298 | chr16:32511707-32511708 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
22 | rs537861253 | chr16:32511746-32511747 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
23 | rs556093140 | chr16:32511750-32511751 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
24 | rs575186600 | chr16:32511758-32511759 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
25 | rs145701055 | chr16:32511766-32511767 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
26 | rs372582967 | chr16:32511772-32511773 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
27 | rs572981702 | chr16:32511823-32511824 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
28 | rs540418421 | chr16:32511854-32511855 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
29 | rs564869323 | chr16:32511865-32511866 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
30 | rs571350441 | chr16:32511911-32511912 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
31 | rs28778587 | chr16:32511914-32511915 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
32 | rs544228693 | chr16:32511921-32511922 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
33 | rs562437337 | chr16:32511922-32511923 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
34 | rs529700778 | chr16:32512001-32512002 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
35 | rs548929465 | chr16:32512006-32512007 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
36 | rs560766370 | chr16:32512031-32512032 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
37 | rs62043435 | chr16:32512040-32512041 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
38 | rs552697691 | chr16:32512060-32512061 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
39 | rs570860167 | chr16:32512078-32512079 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
40 | rs538309494 | chr16:32512079-32512080 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
41 | rs549780236 | chr16:32512086-32512087 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
42 | rs568148712 | chr16:32512099-32512100 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
43 | rs535433672 | chr16:32512103-32512104 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
44 | rs554490428 | chr16:32512106-32512107 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
45 | rs573081149 | chr16:32512155-32512156 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
46 | rs28794273 | chr16:32512192-32512193 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
47 | rs558670087 | chr16:32512193-32512194 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
48 | rs576885721 | chr16:32512225-32512226 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
49 | rs28877617 | chr16:32512249-32512250 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
50 | rs544359594 | chr16:32512276-32512277 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Hodgkin''s lymphoma | 20651079 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Melanoma | 18172304 | CNVD |
Breast cancer | 16608533 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 17133270 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Lung adenocarcinoma | 17086460 | CNVD |
Lung cancer | 17086460 | CNVD |
Autism | 22566537 | CNVD |
Intellectual disability | 22566537 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 17603634 | CNVD |
Breast cancer | 21264507 | CNVD |
Cervical cancer | 21063398 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Autism | 19415332 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Schizophrenia | 22958593 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Autism | 22495311 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Breast cancer | 21858162 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Mental retardation | 19951919 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Bladder cancer | 21909424 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Breast cancer | 21785460 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Breast cancer | 21990379 | CNVD |
Astrocytoma | 22246337 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Epilepsy | 22499536 | CNVD |
Attention deficit hyperactivity disorder | 21324949 | CNVD |
Austim spectrum disorder | 21302340 | CNVD |
Autism | 22513405 | CNVD |
Autism | 22958593 | CNVD |
Autism | 18184952 | CNVD |
Autism | 19966786 | CNVD |
Autism | 21394203 | CNVD |
Autism | 21969575 | CNVD |
Autism | 22241247 | CNVD |
Autism | 20970697 | CNVD |
Autism | 20942916 | CNVD |
Epilepsy | 20970697 | CNVD |
Intellectual disability | 22045946 | CNVD |
Mental retardation | 19966786 | CNVD |
Developmental delay | 20808231 | CNVD |
Obesity | 20808231 | CNVD |
Autism | 18923514 | CNVD |
Obesity | 21881559 | CNVD |
Obesity | 21956041 | CNVD |
Autism | 20659124 | CNVD |
Mental retardation | 21062444 | CNVD |
Schizophrenia | 20587603 | CNVD |
Schizophrenia | 21285140 | CNVD |
Schizophrenia | 22885689 | CNVD |
Schizophrenia | 20553308 | CNVD |
Schizophrenia | 20970697 | CNVD |
Schizophrenia | 20433910 | CNVD |
Schizophrenia | 22241247 | CNVD |
Autism | 19242545 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Intracranial ependymoma | 16609018 | CNVD |
Schizophrenia | 21399695 | CNVD |
Autism | 21956041 | CNVD |
Disorders of sex development | 21048976 | CNVD |
Autism | 22067053 | CNVD |
Autism | 18156158 | CNVD |
Mental retardation | 20152051 | CNVD |
Autism | 19218893 | CNVD |
Autism | 21289514 | CNVD |
Schizophrenia | 19855392 | CNVD |
neurodevelopmental Syndrome | 20503337 | CNVD |
Benign familial neonatal-infantile seizures | 21060786 | CNVD |
Low-grade fibromyxoid sarcoma | 0 | CNVD |
Cancer | 21183584 | CNVD |
Low-grade fibromyxoid sarcoma | 21536545 | CNVD |
Breast cancer | 21045282 | CNVD |
Neuroblastoma | 20406844 | CNVD |
Autism | 19050728 | CNVD |
Epilepsy | 20923578 | CNVD |
Psychiatric disorder | 19050728 | CNVD |
Schizophrenia | 19348701 | CNVD |
Attention deficit hyperactivity disorder | 19097825 | CNVD |
Autism | 20964600 | CNVD |
Schizophrenia | 19955444 | CNVD |
Schizophrenia | 18990708 | CNVD |
Schizophrenia | 19571808 | CNVD |
Breast cancer | 20409316 | CNVD |
Severe combined immunodeficiency | 19097825 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Autism | 18522746 | CNVD |
Sezary syndrome | 18413736 | CNVD |
Wilms tumour | 21544195 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Cancer | 20164920 | CNVD |
Autism | 19287141 | CNVD |
Schizophrenia | 20967226 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Breast cancer | 21364760 | CNVD |
Breast cancer | 17142309 | CNVD |
Cancer | 20164919 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Non-syndromic sensorineural hearing loss | 22297974 | CNVD |
Lung cancer | 18438408 | CNVD |
Recurrent pregnancy loss | 19789632 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
Glioma | 20126413 | CNVD |
Osteosarcoma | 21215367 | CNVD |
Autism | 21865298 | CNVD |
Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
Breast cancer | 21509527 | CNVD |
Stenocardia | 21860640 | CNVD |
Vasospasm | 21860640 | CNVD |
Breast cancer | 22522925 | CNVD |
Melanoma | 20877625 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:32511200-32562600 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
2 | chr16:32513800-32526800 | ZNF genes & repeats | Duodenum Smooth Muscle | Duodenum |
3 | chr16:32513800-32564000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
4 | chr16:32513800-32572000 | ZNF genes & repeats | Liver | Liver |
5 | chr16:32514600-32561200 | ZNF genes & repeats | HUES64 Cell Line | embryonic stem cell |
6 | chr16:32515200-32518000 | ZNF genes & repeats | iPS-20b Cell Line | embryonic stem cell |
7 | chr16:32515200-32562800 | ZNF genes & repeats | Adipose Nuclei | Adipose |
8 | chr16:32515400-32516000 | ZNF genes & repeats | Psoas Muscle | Psoas |
9 | chr16:32515400-32518400 | ZNF genes & repeats | Brain Substantia Nigra | brain |
10 | chr16:32515600-32517800 | ZNF genes & repeats | Primary T helper memory cells from peripheral blood 2 | blood |
11 | chr16:32515600-32521600 | ZNF genes & repeats | Brain Anterior Caudate | brain |
12 | chr16:32515800-32518400 | ZNF genes & repeats | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
13 | chr16:32516200-32521600 | ZNF genes & repeats | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
14 | chr16:32516200-32524200 | ZNF genes & repeats | Duodenum Mucosa | Duodenum |
15 | chr16:32516800-32517400 | Active TSS | Aorta | Aorta |
16 | chr16:32517000-32517600 | ZNF genes & repeats | iPS-18 Cell Line | embryonic stem cell |
17 | chr16:32517400-32519000 | ZNF genes & repeats | Primary T helper cells PMA-I stimulated | -- |
18 | chr16:32518000-32518600 | ZNF genes & repeats | Fetal Brain Male | brain |
19 | chr16:32518200-32519000 | Active TSS | Right Atrium | heart |
20 | chr16:32520200-32520400 | ZNF genes & repeats | Brain Substantia Nigra | brain |
21 | chr16:32520400-32523400 | ZNF genes & repeats | Psoas Muscle | Psoas |
22 | chr16:32520600-32523600 | ZNF genes & repeats | Fetal Brain Male | brain |
23 | chr16:32521000-32524200 | ZNF genes & repeats | Brain Substantia Nigra | brain |
24 | chr16:32521200-32521600 | ZNF genes & repeats | Brain Hippocampus Middle | brain |
25 | chr16:32521800-32522000 | ZNF genes & repeats | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
26 | chr16:32521800-32522400 | Active TSS | Right Atrium | heart |
27 | chr16:32523200-32523600 | Bivalent/Poised TSS | Right Atrium | heart |
28 | chr16:32523600-32524200 | Active TSS | Right Atrium | heart |
29 | chr16:32524200-32527800 | Weak transcription | Right Atrium | heart |
30 | chr16:32525600-32527800 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
31 | chr16:32526000-32526400 | ZNF genes & repeats | Duodenum Mucosa | Duodenum |
32 | chr16:32526200-32526600 | Active TSS | Aorta | Aorta |
33 | chr16:32526400-32526600 | ZNF genes & repeats | iPS-20b Cell Line | embryonic stem cell |
34 | chr16:32526600-32528000 | Weak transcription | Aorta | Aorta |
35 | chr16:32526800-32530000 | ZNF genes & repeats | HUES6 Cell Line | embryonic stem cell |
36 | chr16:32527800-32529000 | Active TSS | Right Atrium | heart |
37 | chr16:32528000-32531600 | Active TSS | Aorta | Aorta |
38 | chr16:32528200-32528400 | ZNF genes & repeats | iPS-20b Cell Line | embryonic stem cell |
39 | chr16:32529200-32530400 | ZNF genes & repeats | Fetal Brain Male | brain |
40 | chr16:32529200-32530800 | ZNF genes & repeats | Rectal Mucosa Donor 31 | rectum |
41 | chr16:32529200-32535200 | ZNF genes & repeats | Psoas Muscle | Psoas |
42 | chr16:32529400-32530600 | ZNF genes & repeats | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
43 | chr16:32529400-32570400 | ZNF genes & repeats | Duodenum Smooth Muscle | Duodenum |
44 | chr16:32529800-32536000 | ZNF genes & repeats | iPS-18 Cell Line | embryonic stem cell |
45 | chr16:32529800-32536800 | ZNF genes & repeats | Duodenum Mucosa | Duodenum |
46 | chr16:32530400-32531400 | Weak transcription | Fetal Brain Male | brain |
47 | chr16:32531000-32531200 | ZNF genes & repeats | H1 Cell Line | embryonic stem cell |
48 | chr16:32531400-32534000 | ZNF genes & repeats | Fetal Brain Male | brain |
49 | chr16:32531600-32535600 | Weak transcription | Aorta | Aorta |
50 | chr16:32531600-32538800 | ZNF genes & repeats | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |