Variant report

Variant	nsv1063550
Chromosome Location	chr19:24460806-24507160
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2881 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:2881 , 50 per page) page: 1 2 3 4 5 6 7 ... 58

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534185702	chr19:24460820-24460821	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs559193092	chr19:24460840-24460841	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs571102525	chr19:24460854-24460855	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs537424423	chr19:24460867-24460868	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs548912499	chr19:24460868-24460869	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs574168402	chr19:24460880-24460881	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs201573149	chr19:24460893-24460894	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs541529211	chr19:24460894-24460895	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs193003898	chr19:24460901-24460902	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs184787283	chr19:24460918-24460919	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs545726955	chr19:24460920-24460921	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs188523337	chr19:24460930-24460931	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs531671633	chr19:24460937-24460938	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs372954334	chr19:24460943-24460944	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs562752927	chr19:24460959-24460960	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs562890140	chr19:24460973-24460974	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs530169942	chr19:24460974-24460975	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs537933386	chr19:24460977-24460978	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs386808217	chr19:24460983-24460984	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs1609035	chr19:24460984-24460985	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs113490271	chr19:24460987-24460988	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs8189903	chr19:24460993-24460994	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs571246056	chr19:24460997-24460998	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs527310202	chr19:24461006-24461007	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs116223872	chr19:24461020-24461021	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs150907579	chr19:24461040-24461041	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs555695055	chr19:24461046-24461047	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs573473620	chr19:24461047-24461048	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs535148237	chr19:24461059-24461060	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs547488102	chr19:24461082-24461083	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs8189946	chr19:24461089-24461090	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs181651822	chr19:24461163-24461164	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs545963203	chr19:24461176-24461177	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs185986337	chr19:24461177-24461178	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs113982895	chr19:24461183-24461184	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs576377511	chr19:24461201-24461202	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs79300026	chr19:24461266-24461267	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs374195844	chr19:24461280-24461281	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs2434844	chr19:24461282-24461283	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs189586653	chr19:24461311-24461312	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs182045881	chr19:24461312-24461313	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs540955678	chr19:24461323-24461324	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs77130574	chr19:24461347-24461348	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs552703442	chr19:24461387-24461388	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs115087476	chr19:24461424-24461425	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs538150044	chr19:24461425-24461426	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs531846785	chr19:24461426-24461427	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs186253066	chr19:24461427-24461428	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs568464900	chr19:24461431-24461432	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs535407989	chr19:24461444-24461445	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
Lung cancer	18438408	CNVD

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24455800-24462600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:24468000-24473400	ZNF genes & repeats	Liver	Liver
3	chr19:24468400-24496800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:24468600-24477400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr19:24469200-24504400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr19:24472000-24475000	ZNF genes & repeats	Adipose Nuclei	Adipose
7	chr19:24472800-24473200	Active TSS	Aorta	Aorta
8	chr19:24473200-24474200	Weak transcription	Aorta	Aorta
9	chr19:24474000-24474800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
10	chr19:24474200-24474400	ZNF genes & repeats	Brain Substantia Nigra	brain
11	chr19:24474200-24474400	ZNF genes & repeats	Dnd41	blood
12	chr19:24474200-24474400	ZNF genes & repeats	Osteobl	bone
13	chr19:24474200-24474600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
14	chr19:24474200-24474600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
15	chr19:24474200-24474800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
16	chr19:24474200-24474800	ZNF genes & repeats	Primary T cells from cord blood	blood
17	chr19:24474200-24474800	Active TSS	Aorta	Aorta
18	chr19:24474200-24474800	ZNF genes & repeats	NH-A	brain
19	chr19:24474200-24475000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
20	chr19:24474400-24474800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr19:24474600-24474800	ZNF genes & repeats	HepG2	liver
22	chr19:24474600-24474800	ZNF genes & repeats	HUVEC	blood vessel
23	chr19:24474600-24474800	ZNF genes & repeats	K562	blood
24	chr19:24475000-24475600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr19:24475600-24504400	ZNF genes & repeats	Liver	Liver
26	chr19:24478600-24484600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr19:24480000-24493400	ZNF genes & repeats	Adipose Nuclei	Adipose
28	chr19:24480800-24481400	Active TSS	Aorta	Aorta
29	chr19:24481600-24494000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
30	chr19:24484400-24485000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr19:24484800-24486000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
32	chr19:24486400-24487200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
33	chr19:24486400-24490800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
34	chr19:24491800-24492400	Active TSS	Aorta	Aorta
35	chr19:24495600-24497600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
36	chr19:24499000-24502200	ZNF genes & repeats	Adipose Nuclei	Adipose
37	chr19:24499200-24502000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
38	chr19:24500800-24501200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr19:24503800-24512000	ZNF genes & repeats	Adipose Nuclei	Adipose
40	chr19:24505400-24505800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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