Variant report

Variant	nsv1064502
Chromosome Location	chr19:40758049-40781360
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:490)
CpG islands
(count:61)
Chromatin interactive
region (count:25)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:490 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:40759543-40760059	HepG2	liver:	n/a	n/a
2	ARID3A	chr19:40778392-40779106	K562	blood:	n/a	n/a
3	ARID3A	chr19:40765566-40765617	K562	blood:	n/a	n/a
4	ATF1	chr19:40778758-40779057	K562	blood:	n/a	n/a
5	ATF1	chr19:40774538-40774835	K562	blood:	n/a	chr19:40774689-40774703
6	ATF3	chr19:40774438-40774827	K562	blood:	n/a	n/a
7	BACH1	chr19:40770822-40770846	H1-hESC	embryonic stem cell:	n/a	n/a
8	BACH1	chr19:40780681-40780685	K562	blood:	n/a	n/a
9	BACH1	chr19:40758454-40758709	H1-hESC	embryonic stem cell:	n/a	n/a
10	BACH1	chr19:40774417-40774736	K562	blood:	n/a	n/a
11	BHLHE40	chr19:40778193-40779131	K562	blood:	n/a	n/a
12	BHLHE40	chr19:40781087-40781345	GM12878	blood:	n/a	n/a
13	BHLHE40	chr19:40781026-40781347	K562	blood:	n/a	n/a
14	BHLHE40	chr19:40780462-40780858	GM12878	blood:	n/a	n/a
15	BHLHE40	chr19:40780502-40780719	K562	blood:	n/a	n/a
16	BHLHE40	chr19:40774566-40774823	K562	blood:	n/a	n/a
17	CBX3	chr19:40773410-40773796	K562	blood:	n/a	n/a
18	CBX3	chr19:40778246-40779098	K562	blood:	n/a	n/a
19	CBX3	chr19:40774408-40774951	K562	blood:	n/a	n/a
20	CBX3	chr19:40781122-40781516	K562	blood:	n/a	n/a
21	CCNT2	chr19:40778633-40779035	K562	blood:	n/a	n/a
22	CEBPB	chr19:40773449-40773645	K562	blood:	n/a	n/a
23	CEBPB	chr19:40778379-40779154	K562	blood:	n/a	n/a
24	CEBPB	chr19:40767591-40767877	IMR90	lung:	n/a	n/a
25	CEBPB	chr19:40778270-40779334	K562	blood:	n/a	n/a
26	CEBPB	chr19:40774526-40774890	IMR90	lung:	n/a	chr19:40774707-40774718
27	CEBPB	chr19:40763060-40763425	Hela-S3	cervix:	n/a	n/a
28	CEBPB	chr19:40774442-40774891	K562	blood:	n/a	chr19:40774707-40774718
29	CEBPB	chr19:40767643-40767832	A549	lung:	n/a	n/a
30	CEBPB	chr19:40767709-40767785	K562	blood:	n/a	n/a
31	CEBPB	chr19:40774566-40774838	HepG2	liver:	n/a	chr19:40774707-40774718
32	CEBPB	chr19:40774503-40774911	K562	blood:	n/a	chr19:40774707-40774718
33	CEBPB	chr19:40774556-40774777	A549	lung:	n/a	chr19:40774707-40774718
34	CEBPB	chr19:40774540-40774752	K562	blood:	n/a	chr19:40774707-40774718
35	CEBPB	chr19:40762892-40763477	MCF-7	breast:	n/a	n/a
36	CEBPD	chr19:40778564-40779167	K562	blood:	n/a	n/a
37	CEBPD	chr19:40778558-40779143	K562	blood:	n/a	n/a
38	CHD2	chr19:40780645-40780923	K562	blood:	n/a	n/a
39	CHD2	chr19:40780572-40781350	GM12878	blood:	n/a	n/a
40	CHD2	chr19:40778196-40778944	K562	blood:	n/a	n/a
41	CHD2	chr19:40770689-40770809	H1-hESC	embryonic stem cell:	n/a	n/a
42	CHD2	chr19:40763004-40763078	Hela-S3	cervix:	n/a	chr19:40763068-40763078
43	CREB1	chr19:40774430-40774899	K562	blood:	n/a	n/a
44	CREB1	chr19:40774397-40774903	K562	blood:	n/a	n/a
45	CTCF	chr19:40770139-40770190	MCF-7	breast:	n/a	chr19:40770162-40770180 chr19:40770165-40770178 chr19:40770163-40770179
46	CTCF	chr19:40762534-40762634	MCF-7	breast:	n/a	n/a
47	CTCF	chr19:40761120-40761270	Caco-2	colon:	n/a	chr19:40761196-40761209
48	CTCF	chr19:40776452-40776639	H1-hESC	embryonic stem cell:	n/a	n/a
49	CTCF	chr19:40770374-40770429	MCF-7	breast:	n/a	n/a
50	CTCF	chr19:40770147-40770204	GM12878	blood:	n/a	chr19:40770162-40770180 chr19:40770165-40770178 chr19:40770163-40770179

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:40770176-40770226	SK-N-MC	brain:	n/a
2	chr19:40770176-40770226	Jurkat	blood:	n/a
3	chr19:40770176-40770226	A549	lung:	n/a
4	chr19:40770176-40770226	SKMC	muscle:	n/a
5	chr19:40770176-40770226	AG10803	skin:	n/a
6	chr19:40770176-40770226	HepG2	liver:	n/a
7	chr19:40770176-40770226	SK-N-SH	brain:	n/a
8	chr19:40770176-40770226	HEEpiC	esophagus:	n/a
9	chr19:40770176-40770226	SK-N-SH_RA	brain:	n/a
10	chr19:40770176-40770226	ECC-1	luminal epithelium:	n/a
11	chr19:40770176-40770226	MCF-7	breast:	n/a
12	chr19:40770176-40770226	HIPEpiC	eye:	n/a
13	chr19:40770176-40770226	NHDF-neo	bronchial:	n/a
14	chr19:40770176-40770226	HCT-116	colon:	n/a
15	chr19:40770176-40770226	HMEC	breast:	n/a
16	chr19:40770176-40770226	RPTEC	kidney:	n/a
17	chr19:40770176-40770226	LNCaP	prostate:	n/a
18	chr19:40770176-40770226	T-47D	breast:	n/a
19	chr19:40770176-40770226	HNPCEpiC	eye:	n/a
20	chr19:40770176-40770226	GM06990	blood:	n/a
21	chr19:40770176-40770226	ProgFib	skin:	n/a
22	chr19:40770176-40770226	GM19239	blood:	n/a
23	chr19:40770176-40770226	HAEpiC	amniotic membrane:	n/a
24	chr19:40770176-40770226	HCPEpiC	choroid plexus:	n/a
25	chr19:40770176-40770226	NHBE	bronchial:	n/a
26	chr19:40770176-40770226	MCF10A-Er-Src	breast:	n/a
27	chr19:40770176-40770226	PFSK-1	brain:	n/a
28	chr19:40770176-40770226	NT2-D1	testis:	n/a
29	chr19:40770176-40770226	Hela-S3	cervix:	n/a
30	chr19:40770176-40770226	SAEC	small airway:	n/a
31	chr19:40770176-40770226	BJ	skin:	n/a
32	chr19:40770176-40770226	IMR90	lung:	fetal
33	chr19:40770176-40770226	Hepatocyte	liver:	n/a
34	chr19:40770176-40770226	AG04449	skin:	fetal
35	chr19:40770176-40770226	HRE	kidney:	n/a
36	chr19:40770176-40770226	HRCEpiC	kidney:	n/a
37	chr19:40770176-40770226	NH-A	brain:	n/a
38	chr19:40770176-40770226	AG09319	gingival:	n/a
39	chr19:40770176-40770226	K562	blood:	n/a
40	chr19:40770176-40770226	BE2_C	brain:	n/a
41	chr19:40770176-40770226	NB4	blood:	n/a
42	chr19:40770176-40770226	HCM	heart:	n/a
43	chr19:40770176-40770226	U87	brain:	n/a
44	chr19:40770176-40770226	AoSMC	blood vessel:	n/a
45	chr19:40770176-40770226	H1-hESC	embryonic stem cell:	embryo
46	chr19:40770176-40770226	CMK	blood:	n/a
47	chr19:40770176-40770226	Caco-2	colon:	n/a
48	chr19:40770176-40770226	HCF	heart:	n/a
49	chr19:40770176-40770226	GM12891	blood:	n/a
50	chr19:40770176-40770226	HEK293	kidney:	embryo

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:40763137..40764665-chr19:40768633..40770903,2	MCF-7	breast:
2	chr19:40757204..40758764-chr19:40774239..40776253,2	K562	blood:
3	chr19:40772625..40774748-chr19:40789587..40791342,2	MCF-7	breast:
4	chr17:56708147..56710537-chr19:40780894..40783062,2	MCF-7	breast:
5	chr19:40730135..40732831-chr19:40769478..40772203,2	MCF-7	breast:
6	chr19:40757637..40759923-chr19:40784996..40787780,2	K562	blood:
7	chr19:40776409..40778614-chr19:40779445..40781045,2	K562	blood:
8	chr19:40776468..40779839-chr19:40784717..40787633,5	MCF-7	breast:
9	chr19:40776878..40778500-chr19:40970454..40972142,2	K562	blood:
10	chr19:40766133..40769095-chr19:40773189..40775084,2	K562	blood:
11	chr19:40773358..40775863-chr19:40778274..40780379,3	K562	blood:
12	chr19:40754146..40755800-chr19:40763608..40765954,2	K562	blood:
13	chr19:40778844..40781132-chr19:41035904..41037926,2	K562	blood:
14	chr19:40780031..40782205-chr19:40949064..40951116,2	K562	blood:
15	chr19:40774152..40777118-chr19:40779107..40782198,3	MCF-7	breast:
16	chr19:40763137..40764665-chr19:40768633..40770903,2	MCF-7	breast:
17	chr19:40770481..40772610-chr19:40774016..40777021,3	K562	blood:
18	chr19:40774152..40777118-chr19:40779107..40782198,3	MCF-7	breast:
19	chr19:40769216..40771181-chr19:40778063..40779733,2	K562	blood:
20	chr19:40768260..40771807-chr19:40783478..40786593,4	K562	blood:
21	chr19:40766133..40769095-chr19:40773189..40775084,2	K562	blood:
22	chr19:40749209..40752062-chr19:40757715..40759395,2	K562	blood:
23	chr19:40770481..40772610-chr19:40774016..40777021,3	K562	blood:
24	chr19:40772355..40774714-chr19:40778588..40781448,2	MCF-7	breast:
25	chr19:40763181..40767170-chr19:40767340..40771711,5	K562	blood:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC118344.1-1	chr19:40780067-40781386	ENSG00000205041.1
2	lnc-MAP3K10-1	chr19:40779416-40780009	l_1686_chr19:40779415-40784234_testes
3	lnc-MAP3K10-1	chr19:40780043-40780172	l_1686_chr19:40779415-40784234_testes
4	lnc-AC118344.1-1	chr19:40779396-40779537	ENSG00000205041.1
5	lnc-MAP3K10-1	chr19:40780617-40780699	l_1686_chr19:40779415-40784234_testes
6	lnc-MAP3K10-1	chr19:40780649-40780699	NONHSAT066362
7	lnc-AC118344.1-2	chr19:40774549-40774992	NONHSAT066360

No data

Variant related genes	Relation type
AKT2	TF binding region
AKT2	CpG island
ENSG00000212195	chromatin interactions
ENSG00000090013	chromatin interactions
ENSG00000160460	chromatin interactions
ENSG00000268366	chromatin interactions
ENSG00000205041	chromatin interactions
ENSG00000105221	chromatin interactions
ENSG00000105219	chromatin interactions
ENSG00000167565	chromatin interactions

Extended variants
information (count: 900 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:900 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs574613153	chr19:40758066-40758067	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs117700627	chr19:40758094-40758095	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs372389200	chr19:40758122-40758123	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs563707926	chr19:40758161-40758162	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs375540115	chr19:40758183-40758184	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs531067582	chr19:40758220-40758221	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs181857097	chr19:40758280-40758281	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs564662705	chr19:40758307-40758308	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs528732615	chr19:40758349-40758350	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs143987939	chr19:40758424-40758425	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs568135259	chr19:40758435-40758436	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs535560282	chr19:40758444-40758445	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs186590790	chr19:40758473-40758474	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs71334903	chr19:40758508-40758509	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs544475386	chr19:40758510-40758511	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs375629452	chr19:40758550-40758551	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs568881387	chr19:40758551-40758552	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs539341753	chr19:40758554-40758555	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs558065661	chr19:40758606-40758607	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs563074156	chr19:40758693-40758694	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs62107566	chr19:40758715-40758716	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs572679002	chr19:40758748-40758749	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs533709690	chr19:40758770-40758771	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs57554707	chr19:40758796-40758797	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs574549791	chr19:40758803-40758804	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs542310212	chr19:40758812-40758813	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs190610578	chr19:40758814-40758815	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs111760449	chr19:40758849-40758850	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs546166844	chr19:40758865-40758866	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs564799745	chr19:40758878-40758879	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs181480269	chr19:40758928-40758929	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs547183120	chr19:40758933-40758934	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs562276878	chr19:40759098-40759099	Enhancers Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs528935476	chr19:40759116-40759117	Enhancers Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs550690487	chr19:40759166-40759167	Enhancers Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs568743171	chr19:40759167-40759168	Enhancers Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs112298060	chr19:40759199-40759200	Enhancers Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs377719287	chr19:40759242-40759243	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs146219607	chr19:40759278-40759279	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs560373953	chr19:40759300-40759301	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs116442705	chr19:40759321-40759322	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs555093910	chr19:40759331-40759332	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs370456281	chr19:40759355-40759356	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs78937981	chr19:40759364-40759365	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs142515817	chr19:40759366-40759367	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs10689398	chr19:40759367-40759368	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs386389021	chr19:40759368-40759369	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs199673581	chr19:40759370-40759371	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs397824824	chr19:40759371-40759372	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs573549507	chr19:40759375-40759376	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Ovarian neoplasms	16753589	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Lung cancer	21569311	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Gastric cancer	18160780	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	19029149	CNVD
Breast cancer	20409316	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Renal cell carcinoma	18765545	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Genital abnormality	22378287	CNVD
Hypospadia	22378287	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Astrocytoma	22246337	CNVD
Anaplastic thyroid cancer	18753363	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1341 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40732800-40759000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr19:40738000-40763800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr19:40739200-40758400	Strong transcription	Fetal Intestine Small	intestine
4	chr19:40741600-40761000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr19:40743200-40760800	Weak transcription	HMEC	breast
6	chr19:40745800-40760800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr19:40746400-40760800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr19:40747200-40759400	Weak transcription	Hela-S3	cervix
9	chr19:40747200-40760800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr19:40747400-40759200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr19:40748200-40758200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr19:40748400-40758400	Weak transcription	Osteobl	bone
13	chr19:40748400-40761000	Weak transcription	Small Intestine	intestine
14	chr19:40748600-40759400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr19:40748800-40760800	Weak transcription	NH-A	brain
16	chr19:40749000-40759000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr19:40749400-40759200	Weak transcription	HUVEC	blood vessel
18	chr19:40750000-40763800	Strong transcription	Thymus	Thymus
19	chr19:40750000-40764000	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr19:40751000-40761800	Weak transcription	Fetal Kidney	kidney
21	chr19:40751200-40758600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr19:40751200-40761600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr19:40751200-40771200	Weak transcription	Fetal Heart	heart
24	chr19:40751600-40758400	Weak transcription	HSMMtube	muscle
25	chr19:40751800-40758400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr19:40751800-40763600	Strong transcription	Fetal Stomach	stomach
27	chr19:40752000-40759000	Weak transcription	NHDF-Ad	bronchial
28	chr19:40752600-40763400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr19:40752800-40758400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr19:40752800-40763400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr19:40753000-40772000	Weak transcription	Fetal Brain Male	brain
32	chr19:40753200-40762800	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr19:40753200-40763000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr19:40753200-40763600	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr19:40753200-40763800	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr19:40753200-40764600	Strong transcription	Primary T cells from cord blood	blood
37	chr19:40753400-40758400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr19:40753600-40763400	Strong transcription	Fetal Thymus	thymus
39	chr19:40753600-40763800	Strong transcription	Dnd41	blood
40	chr19:40753800-40763400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr19:40753800-40763800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr19:40753800-40764400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr19:40754000-40763000	Strong transcription	Brain Germinal Matrix	brain
44	chr19:40754200-40759800	Strong transcription	Fetal Muscle Leg	muscle
45	chr19:40754200-40760800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr19:40754400-40758600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr19:40754600-40759000	Weak transcription	Brain Anterior Caudate	brain
48	chr19:40754600-40759000	Weak transcription	NHEK	skin
49	chr19:40754600-40759600	Weak transcription	Colon Smooth Muscle	Colon
50	chr19:40755000-40763200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links