Variant report

Variant	nsv1064665
Chromosome Location	chr18:25374753-25429234
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr18:25374132..25375724-chr18:25376125..25378154,2	MCF-7	breast:
2	chr18:25374132..25375724-chr18:25376125..25378154,2	MCF-7	breast:
3	chr18:25403860..25406496-chr18:25413422..25415444,2	MCF-7	breast:
4	chr18:25428285..25431235-chr18:25432716..25435281,2	MCF-7	breast:
5	chr18:25422536..25423200-chr5:10132913..10133723,2	MCF-7	breast:
6	chr18:25423651..25425891-chr18:25426260..25429048,2	K562	blood:
7	chr18:25403860..25406496-chr18:25413422..25415444,2	MCF-7	breast:
8	chr18:25423651..25425891-chr18:25426260..25429048,2	K562	blood:

No data

Extended variants
information (count: 1195 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:1195 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4569371	chr18:25374753-25374754	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs535521049	chr18:25374764-25374765	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs553757274	chr18:25374811-25374812	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs184593469	chr18:25374821-25374822	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs375073017	chr18:25374851-25374852	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs4239451	chr18:25374907-25374908	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs4273126	chr18:25374914-25374915	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs201876472	chr18:25374937-25374938	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs576660545	chr18:25374954-25374955	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs544060518	chr18:25374989-25374990	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs555971504	chr18:25375014-25375015	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs574604071	chr18:25375020-25375021	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs541907041	chr18:25375036-25375037	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs150698325	chr18:25375079-25375080	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs373808730	chr18:25375151-25375152	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs545775614	chr18:25375174-25375175	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs564249399	chr18:25375187-25375188	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs574838349	chr18:25375195-25375196	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs74856987	chr18:25375205-25375206	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs552756065	chr18:25375246-25375247	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs149413270	chr18:25375306-25375307	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs144773063	chr18:25375345-25375346	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs547529518	chr18:25375352-25375353	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs566154182	chr18:25375389-25375390	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs115382095	chr18:25375391-25375392	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs114313829	chr18:25375457-25375458	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs4294892	chr18:25375471-25375472	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs560147735	chr18:25375559-25375560	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs537709301	chr18:25375572-25375573	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs189864194	chr18:25375610-25375611	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs556006290	chr18:25375618-25375619	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs4281798	chr18:25375625-25375626	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs576056573	chr18:25375627-25375628	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs77981612	chr18:25375636-25375637	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs78097089	chr18:25375637-25375638	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs543324754	chr18:25375735-25375736	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs181622808	chr18:25375769-25375770	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs572083575	chr18:25375778-25375779	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs374045424	chr18:25375795-25375796	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs545502298	chr18:25375799-25375800	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs139648786	chr18:25375810-25375811	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs185937695	chr18:25375941-25375942	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs543263087	chr18:25375967-25375968	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs144280619	chr18:25376018-25376019	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs529092226	chr18:25376044-25376045	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs547552787	chr18:25376172-25376173	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs190624094	chr18:25376204-25376205	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs201232974	chr18:25376208-25376209	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs533439522	chr18:25376212-25376213	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs564163136	chr18:25376238-25376239	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Esophageal squamous carcinoma	18350619	CNVD
Follicular lymphoma	20505157	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	18923191	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Trisomy 18 syndrome	17576883	CNVD
lymphocytic leukemia	21291569	CNVD
Barrett''s syndrome	19417022	CNVD
Ewing''s sarcoma	17952124	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Glioblastoma multiforme	21922591	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Lung cancer	18438408	CNVD
18q deletion syndrome	19533772	CNVD
Acute myeloid leukemia	16864856	CNVD
Colorectal cancer	21102417	CNVD
Colorectal cancer	20709793	CNVD
Pancreatic cancer	21811562	CNVD
Basal cell lymphoma	21115979	CNVD
Mucosa-associated lymphoid tissue lymphomas	21459788	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
colon cancer	17210682	CNVD
Breast cancer	21785460	CNVD
Hepatocellular carcinoma	16750200	CNVD
Prostate cancer	16573809	CNVD
Autism	16446308	CNVD
Colorectal cancer	19359472	CNVD
Colorectal cancer	16272173	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	18056178	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Metanephric adenoma	20802469	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17133270	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Colorectal cancer	16774939	CNVD
Colorectal cancer	21297112	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	21645411	CNVD
Glioblastoma multiforme	17002787	CNVD
Cancer	21183584	CNVD
Breast cancer	17603634	CNVD
Thyroid cancer	19087340	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	19651600	CNVD
Oral cancer	21386901	CNVD
Colorectal cancer	16912164	CNVD
Renal cell carcinoma	19150565	CNVD
Multiple myeloma	16616336	CNVD
Colorectal cancer	19150955	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Schizophrenia	23813976	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:134 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25374400-25374800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr18:25374600-25375400	Enhancers	Gastric	stomach
3	chr18:25374600-25375400	Enhancers	Ovary	ovary
4	chr18:25374800-25377000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr18:25375200-25375400	Enhancers	Dnd41	blood
6	chr18:25375400-25376400	Weak transcription	Dnd41	blood
7	chr18:25376400-25377400	Enhancers	Dnd41	blood
8	chr18:25377400-25378000	Flanking Active TSS	Dnd41	blood
9	chr18:25378000-25378400	Enhancers	Dnd41	blood
10	chr18:25383800-25384200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr18:25394000-25394600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr18:25400000-25401400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr18:25402800-25403600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr18:25402800-25403600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr18:25402800-25403800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr18:25402800-25405000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr18:25403000-25403600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr18:25403000-25403600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr18:25403200-25403400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr18:25403200-25403600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr18:25403200-25403800	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr18:25403200-25403800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr18:25403400-25404800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr18:25403600-25404800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr18:25403600-25404800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr18:25403600-25405000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr18:25403600-25405200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr18:25403800-25404800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr18:25403800-25405200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr18:25404800-25406200	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr18:25404800-25406400	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr18:25404800-25406400	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr18:25404800-25406800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr18:25404800-25406800	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr18:25404800-25407000	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr18:25405000-25405800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr18:25405000-25406000	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr18:25405000-25406000	Enhancers	Brain Germinal Matrix	brain
39	chr18:25405000-25406200	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr18:25405000-25407000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr18:25405200-25405600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr18:25405200-25405600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr18:25405200-25405800	Enhancers	H9 Cell Line	embryonic stem cell
44	chr18:25405200-25406400	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr18:25405200-25407200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr18:25405400-25406000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr18:25405400-25406000	Enhancers	H1 Cell Line	embryonic stem cell
48	chr18:25405800-25407000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr18:25407000-25410000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr18:25407200-25412400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links