Variant report

Variant	nsv1065102
Chromosome Location	chr20:29835037-30011213
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:844)
CpG islands
(count:1833)
Chromatin interactive
region (count:26)
LncRNA
region (count:19)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:844 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr20:29901133-29901495	HepG2	liver:	n/a	n/a
2	ARID3A	chr20:30001402-30001664	HepG2	liver:	n/a	n/a
3	ATF1	chr20:29901261-29901460	K562	blood:	n/a	n/a
4	BRCA1	chr20:29848239-29848439	Hela-S3	cervix:	n/a	n/a
5	CEBPB	chr20:29930995-29931186	HepG2	liver:	n/a	chr20:29931087-29931098
6	CEBPB	chr20:29886588-29886598	H1-hESC	embryonic stem cell:	n/a	n/a
7	CEBPB	chr20:29929046-29929296	Hela-S3	cervix:	n/a	n/a
8	CEBPB	chr20:29901113-29901610	MCF-7	breast:	n/a	n/a
9	CEBPB	chr20:29891290-29891604	HepG2	liver:	n/a	chr20:29891449-29891460
10	CEBPB	chr20:29886446-29886770	HepG2	liver:	n/a	chr20:29886585-29886596
11	CEBPB	chr20:29926865-29926997	HepG2	liver:	n/a	n/a
12	CEBPB	chr20:29939648-29939720	HepG2	liver:	n/a	chr20:29939667-29939678
13	CEBPB	chr20:29848137-29848451	HepG2	liver:	n/a	n/a
14	CEBPB	chr20:29970579-29970843	HepG2	liver:	n/a	chr20:29970692-29970701 chr20:29970692-29970703
15	CEBPB	chr20:29886470-29886721	A549	lung:	n/a	chr20:29886585-29886596
16	CEBPB	chr20:29970567-29970830	A549	lung:	n/a	chr20:29970692-29970701 chr20:29970692-29970703
17	CEBPB	chr20:29901178-29901527	HepG2	liver:	n/a	n/a
18	CEBPB	chr20:29901179-29901489	IMR90	lung:	n/a	n/a
19	CEBPB	chr20:29848051-29848478	MCF-7	breast:	n/a	n/a
20	CEBPB	chr20:29929475-29929483	K562	blood:	n/a	n/a
21	CEBPB	chr20:29848174-29848446	Hela-S3	cervix:	n/a	n/a
22	CEBPB	chr20:29891404-29891489	IMR90	lung:	n/a	chr20:29891449-29891460
23	CEBPB	chr20:29835515-29835606	HepG2	liver:	n/a	n/a
24	CHD2	chr20:29952083-29952448	K562	blood:	n/a	n/a
25	CHD2	chr20:29952144-29952438	HepG2	liver:	n/a	n/a
26	CHD2	chr20:29848229-29848272	HepG2	liver:	n/a	n/a
27	CTCF	chr20:30001390-30001677	MCF-7	breast:	n/a	n/a
28	CTCF	chr20:29901280-29901430	GM12867	blood:	n/a	chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368
29	CTCF	chr20:30001480-30001630	HMF	breast:	n/a	n/a
30	CTCF	chr20:29900964-29901155	H1-hESC	embryonic stem cell:	n/a	n/a
31	CTCF	chr20:29848190-29848448	GM13977	blood:	n/a	chr20:29848317-29848330 chr20:29848310-29848331 chr20:29848355-29848363 chr20:29848316-29848332 chr20:29848315-29848333
32	CTCF	chr20:29901260-29901410	HCPEpiC	choroid plexus:	n/a	chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368
33	CTCF	chr20:29901280-29901430	AG09319	gingival:	n/a	chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368
34	CTCF	chr20:29901140-29901290	HFF	foreskin:	n/a	n/a
35	CTCF	chr20:30001460-30001610	GM12874	blood:	n/a	n/a
36	CTCF	chr20:29901240-29901390	HMEC	breast:	n/a	chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368
37	CTCF	chr20:29901260-29901410	HRPEpiC	eye:	n/a	chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368
38	CTCF	chr20:30001379-30001694	MCF-7	breast:	n/a	n/a
39	CTCF	chr20:29848174-29848434	K562	blood:	n/a	chr20:29848317-29848330 chr20:29848310-29848331 chr20:29848355-29848363 chr20:29848316-29848332 chr20:29848315-29848333
40	CTCF	chr20:29901013-29901041	GM13977	blood:	n/a	n/a
41	CTCF	chr20:29901000-29901150	MCF-7	breast:	n/a	n/a
42	CTCF	chr20:29848300-29848450	HCT-116	colon:	n/a	chr20:29848317-29848330 chr20:29848310-29848331 chr20:29848355-29848363 chr20:29848316-29848332 chr20:29848315-29848333
43	CTCF	chr20:29900930-29901093	GM12891	blood:	n/a	n/a
44	CTCF	chr20:29901036-29901565	MCF-7	breast:	n/a	chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368
45	CTCF	chr20:29901260-29901410	WERI-Rb-1	eye:	n/a	chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368
46	CTCF	chr20:29900924-29901514	K562	blood:	n/a	chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368
47	CTCF	chr20:30001500-30001650	GM12870	blood:	n/a	n/a
48	CTCF	chr20:29901240-29901390	GM12872	blood:	n/a	chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368
49	CTCF	chr20:30001418-30001651	HepG2	liver:	n/a	n/a
50	CTCF	chr20:29848071-29848759	SK-N-SH	brain:	n/a	chr20:29848317-29848330 chr20:29848310-29848331 chr20:29848355-29848363 chr20:29848316-29848332 chr20:29848315-29848333

(count:1833 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr20:29994192-29994242	AoSMC	blood vessel:	n/a
2	chr20:29844549-29844599	NHDF-neo	bronchial:	n/a
3	chr20:29979846-29979896	GM12878	blood:	n/a
4	chr20:29994192-29994242	AoSMC	blood vessel:	n/a
5	chr20:29844549-29844599	NHDF-neo	bronchial:	n/a
6	chr20:29979846-29979896	GM12878	blood:	n/a
7	chr20:29979846-29979896	ECC-1	luminal epithelium:	n/a
8	chr20:29896479-29896529	BJ	skin:	n/a
9	chr20:29978114-29978164	SK-N-SH	brain:	n/a
10	chr20:29845320-29845370	GM12891	blood:	n/a
11	chr20:29845272-29845322	AG09309	skin:	n/a
12	chr20:29994089-29994139	SK-N-SH_RA	brain:	n/a
13	chr20:29994089-29994139	HCF	heart:	n/a
14	chr20:29896928-29896978	ECC-1	luminal epithelium:	n/a
15	chr20:29956062-29956112	HPAEpiC	pulmonary alveolar:	n/a
16	chr20:29978176-29978226	NHBE	bronchial:	n/a
17	chr20:30008142-30008192	NH-A	brain:	n/a
18	chr20:29994089-29994139	HRE	kidney:	n/a
19	chr20:30007925-30007975	SKMC	muscle:	n/a
20	chr20:29978353-29978403	BJ	skin:	n/a
21	chr20:29994173-29994223	NHBE	bronchial:	n/a
22	chr20:29960982-29961032	SK-N-MC	brain:	n/a
23	chr20:29844516-29844566	HCM	heart:	n/a
24	chr20:29978353-29978403	MCF10A-Er-Src	breast:	n/a
25	chr20:29844549-29844599	ProgFib	skin:	n/a
26	chr20:29896928-29896978	BJ	skin:	n/a
27	chr20:29847402-29847452	IMR90	lung:	fetal
28	chr20:29994846-29994896	NB4	blood:	n/a
29	chr20:29955259-29955309	AG04449	skin:	fetal
30	chr20:29845320-29845370	T-47D	breast:	n/a
31	chr20:29978353-29978403	AoSMC	blood vessel:	n/a
32	chr20:29844516-29844566	NHDF-neo	bronchial:	n/a
33	chr20:29847402-29847452	SK-N-SH_RA	brain:	n/a
34	chr20:29995343-29995393	HCF	heart:	n/a
35	chr20:29845272-29845322	AG09319	gingival:	n/a
36	chr20:29896456-29896506	IMR90	lung:	fetal
37	chr20:29844575-29844625	NHDF-neo	bronchial:	n/a
38	chr20:29965177-29965227	HMEC	breast:	n/a
39	chr20:29956028-29956078	SK-N-SH_RA	brain:	n/a
40	chr20:29994089-29994139	PANC-1	pancreas:	n/a
41	chr20:29965177-29965227	PFSK-1	brain:	n/a
42	chr20:29978114-29978164	PFSK-1	brain:	n/a
43	chr20:29993663-29993713	HUVEC	blood vessel:	n/a
44	chr20:29896479-29896529	AG10803	skin:	n/a
45	chr20:29994089-29994139	HCPEpiC	choroid plexus:	n/a
46	chr20:29978176-29978226	HCM	heart:	n/a
47	chr20:29956330-29956380	K562	blood:	n/a
48	chr20:30008142-30008192	HEK293	kidney:	embryo
49	chr20:30008986-30009036	AG10803	skin:	n/a
50	chr20:30007925-30007975	HRCEpiC	kidney:	n/a

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:30001111..30001772-chr20:30200396..30200937,2	MCF-7	breast:
2	chr20:29874751..29877240-chr20:29903779..29906129,2	K562	blood:
3	chr20:29933564..29935935-chr20:29935958..29938008,2	MCF-7	breast:
4	chr20:29874751..29877240-chr20:29903779..29906129,2	K562	blood:
5	chr20:29905971..29908391-chr20:29910613..29913391,2	K562	blood:
6	chr20:29905971..29908391-chr20:29910613..29913391,2	K562	blood:
7	chr20:29583664..29584204-chr20:29847922..29848698,2	MCF-7	breast:
8	chr20:29955069..29955719-chr20:29963915..29964847,2	MCF-7	breast:
9	chr20:29900644..29901274-chr20:30041865..30042847,4	MCF-7	breast:
10	chr20:30001115..30001627-chr20:30090661..30091593,2	MCF-7	breast:
11	chr20:29900827..29901742-chr20:30090593..30091579,4	MCF-7	breast:
12	chr20:29933564..29935935-chr20:29935958..29938008,2	MCF-7	breast:
13	chr20:29960399..29962900-chr20:29964371..29965877,2	MCF-7	breast:
14	chr20:30001098..30001991-chr20:30090702..30091623,2	MCF-7	breast:
15	chr20:29984307..29986959-chr20:29988552..29991737,3	K562	blood:
16	chr20:29940769..29942399-chr20:29945457..29948097,2	MCF-7	breast:
17	chr20:30006873..30009795-chr20:30012384..30014922,2	MCF-7	breast:
18	chr20:29992014..29994023-chr20:30071484..30073415,2	K562	blood:
19	chr20:30001102..30001956-chr20:30200407..30201209,2	MCF-7	breast:
20	chr20:29960399..29962900-chr20:29964371..29965877,2	MCF-7	breast:
21	chr20:29900754..29901422-chr20:30042008..30042651,2	MCF-7	breast:
22	chr20:29940769..29942399-chr20:29945457..29948097,2	MCF-7	breast:
23	chr20:29984307..29986959-chr20:29988552..29991737,3	K562	blood:
24	chr20:29583096..29583858-chr20:29848251..29848776,2	K562	blood:
25	chr20:29962541..29965456-chr20:29970473..29972766,2	K562	blood:
26	chr20:29976860..29979727-chr20:29989751..29991908,2	MCF-7	breast:

(count:19 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DEFB119-1	chr20:29978226-29978452	NONHSAT079290
2	lnc-DEFB119-1	chr20:29964966-29965242	NR_073153
3	lnc-DEFB115-1	chr20:29857512-29857638	NONHSAT079283
4	lnc-DEFB116-4	chr20:29899691-29899765	NONHSAT079284
5	lnc-DEFB115-1	chr20:29852980-29853059	NONHSAT079283
6	lnc-DEFB116-4	chr20:29899106-29899362	NONHSAT079284
7	lnc-DEFB119-1	chr20:29966155-29966194	NR_073153
8	lnc-DEFB119-2	chr20:29929174-29929962	NONHSAT079285
9	lnc-DEFB119-1	chr20:29976126-29976162	NONHSAT079289
10	lnc-DEFB119-1	chr20:29966155-29966194	NONHSAT079289
11	lnc-DEFB119-1	chr20:29964966-29965242	NONHSAT079289
12	lnc-DEFB119-1	chr20:29976126-29976162	NONHSAT079290
13	lnc-DEFB119-1	chr20:29964966-29965165	NONHSAT079290
14	lnc-DEFB119-2	chr20:29930249-29931017	NONHSAT079285
15	lnc-DEFB119-2	chr20:29931121-29931202	NONHSAT079285
16	lnc-DEFB119-1	chr20:29978226-29978452	NR_073153
17	lnc-DEFB119-2	chr20:29931511-29932274	NONHSAT079285
18	lnc-DEFB119-1	chr20:29978226-29978452	NONHSAT079289
19	lnc-DEFB121-1	chr20:30009242-30009481	NONHSAT079292

No data

Variant related genes	Relation type
RPL31P3	TF binding region
ENSG00000212134	TF binding region
DEFB118	TF binding region
RNA5SP480	TF binding region
DKKL1P1	TF binding region
DEFB117	TF binding region
HAUS6P2	TF binding region
DEFB119	TF binding region
DEFB116	TF binding region
ENSG00000224628	TF binding region
DEFB115	TF binding region
DEFB121	TF binding region
RPL31P3	CpG island
ENSG00000212134	CpG island
DEFB118	CpG island
RNA5SP480	CpG island
DKKL1P1	CpG island
DEFB117	CpG island
HAUS6P2	CpG island
DEFB119	CpG island
DEFB116	CpG island
ENSG00000224628	CpG island
DEFB115	CpG island
DEFB121	CpG island
ENSG00000180483	chromatin interactions
ENSG00000212134	chromatin interactions

Extended variants
information (count: 1885 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:1885 , 50 per page) page: 1 2 3 4 5 6 7 ... 38

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs576155304	chr20:29835047-29835048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs370341326	chr20:29835062-29835063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs533641767	chr20:29835066-29835067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs547290127	chr20:29835096-29835097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs186709615	chr20:29835104-29835105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs139303807	chr20:29835105-29835106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs201410635	chr20:29835113-29835114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs113883610	chr20:29835141-29835142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs564054217	chr20:29835142-29835143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs6142150	chr20:29835158-29835159	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs556385489	chr20:29835184-29835185	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs368319520	chr20:29835253-29835254	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs145151219	chr20:29835266-29835267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs200845652	chr20:29835278-29835279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs201808926	chr20:29835293-29835294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs562956151	chr20:29835300-29835301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs531891437	chr20:29835309-29835310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs548394267	chr20:29835310-29835311	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs561891548	chr20:29835320-29835321	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs560658598	chr20:29835372-29835373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs113578053	chr20:29835382-29835383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs74463247	chr20:29835391-29835392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs201318658	chr20:29835395-29835396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs199550352	chr20:29835397-29835398	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs148939996	chr20:29835401-29835402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs372326188	chr20:29835402-29835403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs59179513	chr20:29835403-29835404	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs57037962	chr20:29835407-29835408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs141440787	chr20:29835431-29835432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs192011855	chr20:29835436-29835437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs539370243	chr20:29835447-29835448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs375746479	chr20:29835452-29835453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs569754358	chr20:29835471-29835472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs535687772	chr20:29835473-29835474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs145147403	chr20:29835479-29835480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs183169885	chr20:29835484-29835485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs187848971	chr20:29835521-29835522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs529471142	chr20:29835534-29835535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs577531266	chr20:29835541-29835542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs539113833	chr20:29835556-29835557	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs574083669	chr20:29835557-29835558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs546189333	chr20:29835592-29835593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs369943935	chr20:29835615-29835616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs191156889	chr20:29835736-29835737	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs182243463	chr20:29835746-29835747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs372247323	chr20:29835753-29835754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs542447517	chr20:29835772-29835773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs561926375	chr20:29835799-29835800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs370933991	chr20:29835839-29835840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs527803701	chr20:29835842-29835843	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Autism	22495311	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21806811	CNVD
Melanoma	21693616	CNVD
Astrocytoma	17387387	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
colon cancer	17210682	CNVD
Colorectal cancer	20709793	CNVD
Breast cancer	22028636	CNVD
Breast cancer	21264507	CNVD
Thyroid cancer	19087340	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Soft tissue tumor	16732325	CNVD
Colorectal cancer	19359472	CNVD
Gastric cancer	17167181	CNVD
Myeloproliferative neoplasm	19047681	CNVD
Breast cancer	17899364	CNVD
Colorectal cancer	16272173	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Bladder cancer	21909424	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	22860045	CNVD
Ovarian cancer	20844748	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	17603634	CNVD
Melanoma	18172304	CNVD
Breast cancer	16608533	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
early-passage human iPS cells	21368824	CNVD
Lung cancer	18438408	CNVD
Gastric cancer	16891809	CNVD
Prostate cancer	16573809	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17133270	CNVD
Oral cancer	21386901	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Gastric cancer	22014070	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21509527	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Amyotrophic lateral sclerosis	20688871	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:29833400-29835600	Weak transcription	Fetal Heart	heart
2	chr20:29833400-29839400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr20:29843800-29844400	Active TSS	Fetal Heart	heart
4	chr20:29857200-29857800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
5	chr20:29857200-29858600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr20:29857600-29858200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
7	chr20:29858200-29859000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr20:29859000-29860600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chr20:29859600-29860800	ZNF genes & repeats	Adipose Nuclei	Adipose
10	chr20:29860000-29860800	ZNF genes & repeats	Gastric	stomach
11	chr20:29860200-29860600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr20:29860600-29862000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr20:29862000-29862600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr20:29865000-29866600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr20:29865800-29866000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr20:29865800-29866800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
17	chr20:29867400-29868000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr20:29901000-29901400	Active TSS	A549	lung
19	chr20:29901000-29901600	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr20:29901200-29901400	Enhancers	Hela-S3	cervix
21	chr20:29901800-29902200	Active TSS	Fetal Heart	heart
22	chr20:29912400-29912800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr20:29918400-29919800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
24	chr20:29935800-29937200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
25	chr20:29956200-29956800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr20:29976800-29978400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
27	chr20:29982200-29983400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr20:29983200-29983400	Enhancers	Spleen	Spleen
29	chr20:29987000-29987600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
30	chr20:30001400-30001600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr20:30002200-30002800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr20:30006200-30006600	Active TSS	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links