Variant report
Variant | nsv1065124 |
---|---|
Chromosome Location | chr20:29833958-29912341 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:551)
- CpG islands (count:611)
- Chromatin interactive region (count:9)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr20:29901133-29901495 | HepG2 | liver: | n/a | n/a |
2 | ATF1 | chr20:29901261-29901460 | K562 | blood: | n/a | n/a |
3 | BRCA1 | chr20:29848239-29848439 | Hela-S3 | cervix: | n/a | n/a |
4 | CEBPB | chr20:29848174-29848446 | Hela-S3 | cervix: | n/a | n/a |
5 | CEBPB | chr20:29848051-29848478 | MCF-7 | breast: | n/a | n/a |
6 | CEBPB | chr20:29891290-29891604 | HepG2 | liver: | n/a | chr20:29891449-29891460 |
7 | CEBPB | chr20:29901113-29901610 | MCF-7 | breast: | n/a | n/a |
8 | CEBPB | chr20:29901178-29901527 | HepG2 | liver: | n/a | n/a |
9 | CEBPB | chr20:29886470-29886721 | A549 | lung: | n/a | chr20:29886585-29886596 |
10 | CEBPB | chr20:29848137-29848451 | HepG2 | liver: | n/a | n/a |
11 | CEBPB | chr20:29901179-29901489 | IMR90 | lung: | n/a | n/a |
12 | CEBPB | chr20:29891404-29891489 | IMR90 | lung: | n/a | chr20:29891449-29891460 |
13 | CEBPB | chr20:29886588-29886598 | H1-hESC | embryonic stem cell: | n/a | n/a |
14 | CEBPB | chr20:29835515-29835606 | HepG2 | liver: | n/a | n/a |
15 | CEBPB | chr20:29886446-29886770 | HepG2 | liver: | n/a | chr20:29886585-29886596 |
16 | CHD2 | chr20:29848229-29848272 | HepG2 | liver: | n/a | n/a |
17 | CTCF | chr20:29901180-29901330 | A549 | lung: | n/a | n/a |
18 | CTCF | chr20:29901180-29901330 | NHLF | lung: | n/a | n/a |
19 | CTCF | chr20:29900958-29901070 | GM19238 | blood: | n/a | n/a |
20 | CTCF | chr20:29848219-29848378 | SK-N-SH_RA | brain: | n/a | chr20:29848317-29848330 chr20:29848310-29848331 chr20:29848355-29848363 chr20:29848316-29848332 chr20:29848315-29848333 |
21 | CTCF | chr20:29848260-29848410 | HCFaa | heart: | n/a | chr20:29848317-29848330 chr20:29848310-29848331 chr20:29848355-29848363 chr20:29848316-29848332 chr20:29848315-29848333 |
22 | CTCF | chr20:29901270-29901454 | GM19239 | blood: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
23 | CTCF | chr20:29900986-29901043 | GM12892 | blood: | n/a | n/a |
24 | CTCF | chr20:29901280-29901430 | HMF | breast: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
25 | CTCF | chr20:29900774-29900845 | Gliobla | brain: | n/a | n/a |
26 | CTCF | chr20:29901000-29901150 | MCF-7 | breast: | n/a | n/a |
27 | CTCF | chr20:29848180-29848330 | HUVEC | blood vessel: | n/a | chr20:29848317-29848330 |
28 | CTCF | chr20:29901240-29901390 | HMEC | breast: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
29 | CTCF | chr20:29901260-29901410 | Hela-S3 | cervix: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
30 | CTCF | chr20:29900995-29901554 | T-47D | breast: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
31 | CTCF | chr20:29900640-29900790 | A549 | lung: | n/a | n/a |
32 | CTCF | chr20:29901280-29901430 | GM12864 | blood: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
33 | CTCF | chr20:29901300-29901450 | HCT-116 | colon: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
34 | CTCF | chr20:29901280-29901430 | AG04450 | lung: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
35 | CTCF | chr20:29840646-29840673 | Lung_OC | lung: | n/a | n/a |
36 | CTCF | chr20:29901300-29901450 | HRE | kidney: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
37 | CTCF | chr20:29901231-29901467 | LNCaP | prostate: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
38 | CTCF | chr20:29848220-29848370 | GM12875 | blood: | n/a | chr20:29848317-29848330 chr20:29848310-29848331 chr20:29848355-29848363 chr20:29848316-29848332 chr20:29848315-29848333 |
39 | CTCF | chr20:29848460-29848610 | GM12867 | blood: | n/a | n/a |
40 | CTCF | chr20:29891691-29891731 | GM20000 | blood: | n/a | n/a |
41 | CTCF | chr20:29848147-29848441 | T-47D | breast: | n/a | chr20:29848317-29848330 chr20:29848310-29848331 chr20:29848355-29848363 chr20:29848316-29848332 chr20:29848315-29848333 |
42 | CTCF | chr20:29900915-29901551 | A549 | lung: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
43 | CTCF | chr20:29900940-29901090 | GM12866 | blood: | n/a | n/a |
44 | CTCF | chr20:29900960-29901110 | AG04449 | skin: | n/a | n/a |
45 | CTCF | chr20:29848273-29848339 | Lung_OC | lung: | n/a | chr20:29848317-29848330 chr20:29848310-29848331 chr20:29848316-29848332 chr20:29848315-29848333 |
46 | CTCF | chr20:29901240-29901390 | WI-38 | lung: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
47 | CTCF | chr20:29901260-29901410 | AG04450 | lung: | n/a | chr20:29901352-29901373 chr20:29901332-29901353 chr20:29901350-29901368 |
48 | CTCF | chr20:29848260-29848410 | GM12868 | blood: | n/a | chr20:29848317-29848330 chr20:29848310-29848331 chr20:29848355-29848363 chr20:29848316-29848332 chr20:29848315-29848333 |
49 | CTCF | chr20:29900993-29901060 | GM12878 | blood: | n/a | n/a |
50 | CTCF | chr20:29900958-29901074 | HepG2 | liver: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:29892486-29892536 | GM06990 | blood: | n/a |
2 | chr20:29892486-29892536 | GM06990 | blood: | n/a |
3 | chr20:29896479-29896529 | SKMC | muscle: | n/a |
4 | chr20:29892486-29892536 | GM12892 | blood: | n/a |
5 | chr20:29896479-29896529 | HMEC | breast: | n/a |
6 | chr20:29892486-29892536 | GM12891 | blood: | n/a |
7 | chr20:29844549-29844599 | AoSMC | blood vessel: | n/a |
8 | chr20:29845272-29845322 | ovcar-3 | ovarian: | n/a |
9 | chr20:29896479-29896529 | HEK293 | kidney: | embryo |
10 | chr20:29844575-29844625 | NH-A | brain: | n/a |
11 | chr20:29844516-29844566 | MCF10A-Er-Src | breast: | n/a |
12 | chr20:29847402-29847452 | GM19239 | blood: | n/a |
13 | chr20:29892486-29892536 | AoSMC | blood vessel: | n/a |
14 | chr20:29847402-29847452 | SKMC | muscle: | n/a |
15 | chr20:29844549-29844599 | PANC-1 | pancreas: | n/a |
16 | chr20:29844516-29844566 | SK-N-MC | brain: | n/a |
17 | chr20:29847402-29847452 | K562 | blood: | n/a |
18 | chr20:29844575-29844625 | PFSK-1 | brain: | n/a |
19 | chr20:29845320-29845370 | SKMC | muscle: | n/a |
20 | chr20:29844549-29844599 | HEEpiC | esophagus: | n/a |
21 | chr20:29896479-29896529 | GM06990 | blood: | n/a |
22 | chr20:29844575-29844625 | LNCaP | prostate: | n/a |
23 | chr20:29844516-29844566 | HEK293 | kidney: | embryo |
24 | chr20:29847402-29847452 | CMK | blood: | n/a |
25 | chr20:29892486-29892536 | Jurkat | blood: | n/a |
26 | chr20:29892486-29892536 | HCPEpiC | choroid plexus: | n/a |
27 | chr20:29845272-29845322 | Caco-2 | colon: | n/a |
28 | chr20:29844575-29844625 | HCF | heart: | n/a |
29 | chr20:29896456-29896506 | HCM | heart: | n/a |
30 | chr20:29847402-29847452 | H1-hESC | embryonic stem cell: | embryo |
31 | chr20:29892486-29892536 | MCF10A-Er-Src | breast: | n/a |
32 | chr20:29844516-29844566 | HRCEpiC | kidney: | n/a |
33 | chr20:29896479-29896529 | HCPEpiC | choroid plexus: | n/a |
34 | chr20:29844549-29844599 | AG10803 | skin: | n/a |
35 | chr20:29847402-29847452 | U87 | brain: | n/a |
36 | chr20:29844575-29844625 | CMK | blood: | n/a |
37 | chr20:29896928-29896978 | AG04450 | lung: | fetal |
38 | chr20:29892486-29892536 | BJ | skin: | n/a |
39 | chr20:29844575-29844625 | GM12878 | blood: | n/a |
40 | chr20:29844549-29844599 | AG09309 | skin: | n/a |
41 | chr20:29896456-29896506 | CMK | blood: | n/a |
42 | chr20:29892486-29892536 | MCF-7 | breast: | n/a |
43 | chr20:29896479-29896529 | Hela-S3 | cervix: | n/a |
44 | chr20:29892486-29892536 | SKMC | muscle: | n/a |
45 | chr20:29844549-29844599 | HNPCEpiC | eye: | n/a |
46 | chr20:29844549-29844599 | HRPEpiC | eye: | n/a |
47 | chr20:29896928-29896978 | HepG2 | liver: | n/a |
48 | chr20:29892486-29892536 | NHDF-neo | bronchial: | n/a |
49 | chr20:29892486-29892536 | HNPCEpiC | eye: | n/a |
50 | chr20:29844575-29844625 | HCM | heart: | n/a |
(count:9 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:29874751..29877240-chr20:29903779..29906129,2 | K562 | blood: | |
2 | chr20:29900644..29901274-chr20:30041865..30042847,4 | MCF-7 | breast: | |
3 | chr20:29874751..29877240-chr20:29903779..29906129,2 | K562 | blood: | |
4 | chr20:29905971..29908391-chr20:29910613..29913391,2 | K562 | blood: | |
5 | chr20:29583096..29583858-chr20:29848251..29848776,2 | K562 | blood: | |
6 | chr20:29900754..29901422-chr20:30042008..30042651,2 | MCF-7 | breast: | |
7 | chr20:29900827..29901742-chr20:30090593..30091579,4 | MCF-7 | breast: | |
8 | chr20:29583664..29584204-chr20:29847922..29848698,2 | MCF-7 | breast: | |
9 | chr20:29905971..29908391-chr20:29910613..29913391,2 | K562 | blood: |
(count:4 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-DEFB115-1 | chr20:29857512-29857638 | NONHSAT079283 |
2 | lnc-DEFB116-4 | chr20:29899691-29899765 | NONHSAT079284 |
3 | lnc-DEFB116-4 | chr20:29899106-29899362 | NONHSAT079284 |
4 | lnc-DEFB115-1 | chr20:29852980-29853059 | NONHSAT079283 |
No data |
No data |
Variant related genes | Relation type |
---|---|
RPL31P3 | TF binding region |
DKKL1P1 | TF binding region |
DEFB116 | TF binding region |
ENSG00000224628 | TF binding region |
DEFB115 | TF binding region |
RPL31P3 | CpG island |
DKKL1P1 | CpG island |
DEFB116 | CpG island |
ENSG00000224628 | CpG island |
DEFB115 | CpG island |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs191403777 | chr20:29833960-29833961 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs183890944 | chr20:29833975-29833976 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs189652726 | chr20:29833981-29833982 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs532103653 | chr20:29834010-29834011 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
5 | rs193034075 | chr20:29834047-29834048 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
6 | rs116935020 | chr20:29834062-29834063 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
7 | rs149255902 | chr20:29834066-29834067 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
8 | rs551257834 | chr20:29834079-29834080 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
9 | rs567907561 | chr20:29834080-29834081 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
10 | rs114708381 | chr20:29834086-29834087 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
11 | rs11907117 | chr20:29834107-29834108 | Weak transcription ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
12 | rs185187999 | chr20:29834120-29834121 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
13 | rs539152097 | chr20:29834137-29834138 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
14 | rs544575160 | chr20:29834145-29834146 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
15 | rs575597706 | chr20:29834158-29834159 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
16 | rs144441066 | chr20:29834195-29834196 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
17 | rs190421947 | chr20:29834198-29834199 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
18 | rs117278602 | chr20:29834215-29834216 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
19 | rs4557063 | chr20:29834240-29834241 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
20 | rs181900757 | chr20:29834241-29834242 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
21 | rs148482670 | chr20:29834253-29834254 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
22 | rs143690374 | chr20:29834261-29834262 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
23 | rs545502443 | chr20:29834282-29834283 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
24 | rs562396154 | chr20:29834290-29834291 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
25 | rs531427848 | chr20:29834301-29834302 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
26 | rs186524356 | chr20:29834304-29834305 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
27 | rs147197412 | chr20:29834308-29834309 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
28 | rs530441501 | chr20:29834321-29834322 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
29 | rs564474367 | chr20:29834322-29834323 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
30 | rs567079361 | chr20:29834325-29834326 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
31 | rs188174157 | chr20:29834326-29834327 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
32 | rs7361611 | chr20:29834350-29834351 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
33 | rs2376538 | chr20:29834368-29834369 | Weak transcription ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
34 | rs569291913 | chr20:29834389-29834390 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
35 | rs568650825 | chr20:29834404-29834405 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
36 | rs140478369 | chr20:29834448-29834449 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
37 | rs568414683 | chr20:29834450-29834451 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
38 | rs533848654 | chr20:29834481-29834482 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
39 | rs553607411 | chr20:29834482-29834483 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
40 | rs576628855 | chr20:29834484-29834485 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
41 | rs6120605 | chr20:29834513-29834514 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
42 | rs35296998 | chr20:29834515-29834516 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
43 | rs144387963 | chr20:29834528-29834529 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
44 | rs556310661 | chr20:29834555-29834556 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
45 | rs576086208 | chr20:29834585-29834586 | Weak transcription ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
46 | rs6059764 | chr20:29834612-29834613 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs115465190 | chr20:29834624-29834625 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs371162965 | chr20:29834633-29834634 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs532858877 | chr20:29834639-29834640 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs551382653 | chr20:29834647-29834648 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Gastric cancer | 17908304 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Colorectal cancer | 21645411 | CNVD |
Autism | 22495311 | CNVD |
Anaplastic large cell lymphoma | 18179710 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Pancreatic endocrine tumor | 17639061 | CNVD |
Chordoma | 18071362 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Breast cancer | 21806811 | CNVD |
Melanoma | 21693616 | CNVD |
Astrocytoma | 17387387 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
colon cancer | 17210682 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Breast cancer | 22028636 | CNVD |
Breast cancer | 21264507 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Myeloproliferative neoplasm | 20015882 | CNVD |
Soft tissue tumor | 16732325 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Gastric cancer | 17167181 | CNVD |
Myeloproliferative neoplasm | 19047681 | CNVD |
Breast cancer | 17899364 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Bladder cancer | 21909424 | CNVD |
Hodgkin''s lymphoma | 18641027 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
Cutaneous T-cell lymphoma | 21881587 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Colorectal cancer | 22860045 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Breast cancer | 17603634 | CNVD |
Melanoma | 18172304 | CNVD |
Breast cancer | 16608533 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
Breast cancer | 21364760 | CNVD |
small cell lung cancer | 20016488 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Lung cancer | 18438408 | CNVD |
Gastric cancer | 16891809 | CNVD |
Prostate cancer | 16573809 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Breast cancer | 17133270 | CNVD |
Oral cancer | 21386901 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
Cancer | 20164920 | CNVD |
Melanoma | 20877625 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Gastric cancer | 22014070 | CNVD |
Breast cancer | 22522925 | CNVD |
Breast cancer | 21509527 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Amyotrophic lateral sclerosis | 20688871 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:29833400-29835600 | Weak transcription | Fetal Heart | heart |
2 | chr20:29833400-29839400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
3 | chr20:29834000-29834600 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
4 | chr20:29843800-29844400 | Active TSS | Fetal Heart | heart |
5 | chr20:29857200-29857800 | ZNF genes & repeats | Pancreatic Islets | Pancreatic Islet |
6 | chr20:29857200-29858600 | ZNF genes & repeats | iPS-20b Cell Line | embryonic stem cell |
7 | chr20:29857600-29858200 | ZNF genes & repeats | Duodenum Smooth Muscle | Duodenum |
8 | chr20:29858200-29859000 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
9 | chr20:29859000-29860600 | ZNF genes & repeats | Duodenum Smooth Muscle | Duodenum |
10 | chr20:29859600-29860800 | ZNF genes & repeats | Adipose Nuclei | Adipose |
11 | chr20:29860000-29860800 | ZNF genes & repeats | Gastric | stomach |
12 | chr20:29860200-29860600 | ZNF genes & repeats | H1 Derived Mesenchymal Stem Cells | ES cell derived |
13 | chr20:29860600-29862000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
14 | chr20:29862000-29862600 | ZNF genes & repeats | H1 Derived Mesenchymal Stem Cells | ES cell derived |
15 | chr20:29865000-29866600 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
16 | chr20:29865800-29866000 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
17 | chr20:29865800-29866800 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
18 | chr20:29867400-29868000 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
19 | chr20:29901000-29901400 | Active TSS | A549 | lung |
20 | chr20:29901000-29901600 | Active TSS | ES-I3 Cell Line | embryonic stem cell |
21 | chr20:29901200-29901400 | Enhancers | Hela-S3 | cervix |
22 | chr20:29901800-29902200 | Active TSS | Fetal Heart | heart |