Variant report

Variant	nsv1065473
Chromosome Location	chr19:53680455-53709341
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:781)
CpG islands
(count:977)
Chromatin interactive
region (count:13)
LncRNA
region (count:14)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:781 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr19:53696341-53696692	H1-hESC	embryonic stem cell:	n/a	n/a
2	BACH1	chr19:53700005-53700557	H1-hESC	embryonic stem cell:	n/a	n/a
3	BACH1	chr19:53696179-53696305	H1-hESC	embryonic stem cell:	n/a	n/a
4	BHLHE40	chr19:53698652-53698829	K562	blood:	n/a	n/a
5	BHLHE40	chr19:53696330-53696718	K562	blood:	n/a	n/a
6	BHLHE40	chr19:53698601-53698837	GM12878	blood:	n/a	n/a
7	BRCA1	chr19:53696315-53697043	H1-hESC	embryonic stem cell:	n/a	n/a
8	CBX3	chr19:53696473-53696709	K562	blood:	n/a	n/a
9	CBX3	chr19:53688313-53688728	K562	blood:	n/a	n/a
10	CCNT2	chr19:53696493-53696794	K562	blood:	n/a	n/a
11	CEBPB	chr19:53696599-53696928	K562	blood:	n/a	n/a
12	CEBPB	chr19:53685649-53685941	IMR90	lung:	n/a	n/a
13	CEBPB	chr19:53696413-53696725	K562	blood:	n/a	n/a
14	CHD1	chr19:53696275-53696352	H1-hESC	embryonic stem cell:	n/a	n/a
15	CHD2	chr19:53686488-53686939	Hela-S3	cervix:	n/a	n/a
16	CHD2	chr19:53696473-53696936	K562	blood:	n/a	n/a
17	CHD2	chr19:53700567-53700576	K562	blood:	n/a	n/a
18	CHD2	chr19:53696117-53696928	H1-hESC	embryonic stem cell:	n/a	n/a
19	CREB1	chr19:53698604-53698892	H1-hESC	embryonic stem cell:	n/a	n/a
20	CTCF	chr19:53698620-53698770	GM12866	blood:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
21	CTCF	chr19:53698584-53698866	GM12892	blood:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
22	CTCF	chr19:53698660-53698810	WI-38	lung:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
23	CTCF	chr19:53693640-53693790	GM12865	blood:	n/a	n/a
24	CTCF	chr19:53698700-53698850	HFF-Myc	foreskin:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
25	CTCF	chr19:53688465-53688682	ProgFib	skin:	n/a	n/a
26	CTCF	chr19:53693168-53693186	LNCaP	prostate:	n/a	n/a
27	CTCF	chr19:53698595-53698838	Hela-S3	cervix:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
28	CTCF	chr19:53698569-53698878	K562	blood:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
29	CTCF	chr19:53698578-53698860	Gliobla	brain:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
30	CTCF	chr19:53698576-53699002	HCT-116	colon:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
31	CTCF	chr19:53693020-53693170	HUVEC	blood vessel:	n/a	n/a
32	CTCF	chr19:53696320-53696470	HBMEC	blood vessel:	n/a	n/a
33	CTCF	chr19:53693020-53693170	SK-N-SH_RA	brain:	n/a	n/a
34	CTCF	chr19:53698660-53698810	WERI-Rb-1	eye:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
35	CTCF	chr19:53698660-53698810	K562	blood:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
36	CTCF	chr19:53700362-53700429	GM12878	blood:	n/a	n/a
37	CTCF	chr19:53700323-53700398	Spleen_OC	spleen:	n/a	n/a
38	CTCF	chr19:53698562-53698815	SK-N-SH_RA	brain:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
39	CTCF	chr19:53688433-53688683	A549	lung:	n/a	n/a
40	CTCF	chr19:53693040-53693190	HPAF	blood vessel:	n/a	n/a
41	CTCF	chr19:53698260-53698410	NHDF-neo	bronchial:	n/a	n/a
42	CTCF	chr19:53698540-53698690	A549	lung:	n/a	n/a
43	CTCF	chr19:53698579-53698860	Pancreas_OC	pancreas:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
44	CTCF	chr19:53698680-53698830	A549	lung:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
45	CTCF	chr19:53698567-53698912	K562	blood:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
46	CTCF	chr19:53693040-53693190	A549	lung:	n/a	n/a
47	CTCF	chr19:53688579-53688636	GM10248	blood:	n/a	n/a
48	CTCF	chr19:53698620-53698770	GM12871	blood:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725
49	CTCF	chr19:53693620-53693770	HPAF	blood vessel:	n/a	n/a
50	CTCF	chr19:53698482-53698946	HepG2	liver:	n/a	chr19:53698716-53698737 chr19:53698715-53698731 chr19:53698718-53698725

(count:977 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:53697534-53697584	HPAEpiC	pulmonary alveolar:	n/a
2	chr19:53697534-53697584	HPAEpiC	pulmonary alveolar:	n/a
3	chr19:53696728-53696778	PrEC	prostate:	n/a
4	chr19:53696753-53696803	NB4	blood:	n/a
5	chr19:53696753-53696803	NHBE	bronchial:	n/a
6	chr19:53685874-53685924	HCF	heart:	n/a
7	chr19:53696886-53696936	HRPEpiC	eye:	n/a
8	chr19:53700527-53700577	BJ	skin:	n/a
9	chr19:53696217-53696267	GM12891	blood:	n/a
10	chr19:53697534-53697584	NT2-D1	testis:	n/a
11	chr19:53696217-53696267	GM12878	blood:	n/a
12	chr19:53696753-53696803	HIPEpiC	eye:	n/a
13	chr19:53700527-53700577	HIPEpiC	eye:	n/a
14	chr19:53697124-53697174	RPTEC	kidney:	n/a
15	chr19:53696326-53696376	HCPEpiC	choroid plexus:	n/a
16	chr19:53696569-53696619	ProgFib	skin:	n/a
17	chr19:53697284-53697334	T-47D	breast:	n/a
18	chr19:53696649-53696699	HCT-116	colon:	n/a
19	chr19:53696217-53696267	GM06990	blood:	n/a
20	chr19:53693063-53693113	HL-60	blood:	n/a
21	chr19:53696886-53696936	T-47D	breast:	n/a
22	chr19:53696623-53696673	HRE	kidney:	n/a
23	chr19:53697284-53697334	HCPEpiC	choroid plexus:	n/a
24	chr19:53696217-53696267	SAEC	small airway:	n/a
25	chr19:53696886-53696936	Hepatocyte	liver:	n/a
26	chr19:53696326-53696376	HCM	heart:	n/a
27	chr19:53697534-53697584	HUVEC	blood vessel:	n/a
28	chr19:53696623-53696673	AG04449	skin:	fetal
29	chr19:53696753-53696803	CMK	blood:	n/a
30	chr19:53696649-53696699	H1-hESC	embryonic stem cell:	embryo
31	chr19:53697534-53697584	ECC-1	luminal epithelium:	n/a
32	chr19:53697124-53697174	MCF-7	breast:	n/a
33	chr19:53700527-53700577	H1-hESC	embryonic stem cell:	embryo
34	chr19:53696623-53696673	Jurkat	blood:	n/a
35	chr19:53696623-53696673	PFSK-1	brain:	n/a
36	chr19:53696886-53696936	RPTEC	kidney:	n/a
37	chr19:53696217-53696267	HNPCEpiC	eye:	n/a
38	chr19:53696217-53696267	NT2-D1	testis:	n/a
39	chr19:53697124-53697174	HNPCEpiC	eye:	n/a
40	chr19:53697534-53697584	GM19239	blood:	n/a
41	chr19:53696217-53696267	ovcar-3	ovarian:	n/a
42	chr19:53697534-53697584	K562	blood:	n/a
43	chr19:53696217-53696267	SKMC	muscle:	n/a
44	chr19:53696886-53696936	NB4	blood:	n/a
45	chr19:53697534-53697584	HepG2	liver:	n/a
46	chr19:53696753-53696803	SK-N-MC	brain:	n/a
47	chr19:53697284-53697334	AG10803	skin:	n/a
48	chr19:53696642-53696692	SKMC	muscle:	n/a
49	chr19:53696649-53696699	HEEpiC	esophagus:	n/a
50	chr19:53696217-53696267	NH-A	brain:	n/a

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:53692021..53693951-chr19:53695076..53697230,2	K562	blood:
2	chr19:53695457..53697741-chr19:53699175..53701996,2	K562	blood:
3	chr19:53686910..53689224-chr19:53694726..53696698,2	K562	blood:
4	chr19:53462207..53464223-chr19:53697419..53699092,2	MCF-7	breast:
5	chr19:53698251..53699428-chr19:54295942..54296559,3	MCF-7	breast:
6	chr19:53700585..53702772-chr19:53706802..53709941,3	MCF-7	breast:
7	chr19:53685574..53688103-chr19:53699507..53701678,2	K562	blood:
8	chr19:53705415..53707075-chr19:53718366..53721132,2	MCF-7	breast:
9	chr19:53698678..53699363-chr19:54014997..54015830,3	MCF-7	breast:
10	chr19:53700585..53702772-chr19:53706802..53709941,3	MCF-7	breast:
11	chr19:53699014..53701688-chr19:53703459..53706126,2	K562	blood:
12	chr19:53695457..53697741-chr19:53699175..53701996,2	K562	blood:
13	chr19:53685672..53687787-chr19:53698865..53701833,2	MCF-7	breast:

(count:14 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF665-1	chr19:53682821-53683237	NONHSAT067643
2	lnc-ZNF665-1	chr19:53696565-53696580	NONHSAT067644
3	lnc-ZNF665-1	chr19:53686137-53686196	NONHSAT067644
4	lnc-ZNF665-1	chr19:53696565-53696639	NONHSAT067643
5	lnc-VN1R2-6	chr19:53707269-53707395	ENSG00000269051.1
6	lnc-ZNF665-1	chr19:53696565-53696619	NONHSAT067645
7	lnc-VN1R2-6	chr19:53703877-53703956	ENSG00000269051.1
8	lnc-ZNF665-1	chr19:53686137-53686196	NONHSAT067643
9	lnc-ZNF665-1	chr19:53683900-53686196	NONHSAT067645
10	lnc-VN1R2-6	chr19:53700364-53700515	ENSG00000269051.1
11	lnc-ZNF665-1	chr19:53682950-53683237	NONHSAT067644
12	lnc-ZNF665-1	chr19:53693439-53693573	NONHSAT067644
13	lnc-ZNF665-1	chr19:53694972-53695088	NONHSAT067644
14	lnc-VN1R2-6	chr19:53705805-53705955	ENSG00000269051.1

No data

Variant related genes	Relation type
ENSG00000269051	TF binding region
ZNF665	TF binding region
ENSG00000269051	CpG island
ZNF665	CpG island
ENSG00000269051	chromatin interactions
ENSG00000197497	chromatin interactions

Extended variants
information (count: 1247 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:1247 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs8101962	chr19:53680455-53680456	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs543486602	chr19:53680460-53680461	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs561650622	chr19:53680548-53680549	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs529024490	chr19:53680592-53680593	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs540737826	chr19:53680615-53680616	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs74649276	chr19:53680666-53680667	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs141105460	chr19:53680667-53680668	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs144917428	chr19:53680676-53680677	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs552838869	chr19:53680677-53680678	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs75369552	chr19:53680683-53680684	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs146658634	chr19:53680696-53680697	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs544311358	chr19:53680703-53680704	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs531872992	chr19:53680713-53680714	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs34570459	chr19:53680714-53680715	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs190115538	chr19:53680726-53680727	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs182853864	chr19:53680758-53680759	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs547534489	chr19:53680764-53680765	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs150554635	chr19:53680789-53680790	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs563414812	chr19:53680790-53680791	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs559172728	chr19:53680794-53680795	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs528326598	chr19:53680799-53680800	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs565873567	chr19:53680823-53680824	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs78613056	chr19:53680827-53680828	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs574622659	chr19:53680828-53680829	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs541643102	chr19:53680842-53680843	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs557975930	chr19:53680863-53680864	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs576440901	chr19:53680876-53680877	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs537317709	chr19:53680900-53680901	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs555420754	chr19:53680915-53680916	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs7251647	chr19:53680921-53680922	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs187916707	chr19:53680962-53680963	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs559137689	chr19:53680984-53680985	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs577662163	chr19:53681009-53681010	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs546027215	chr19:53681029-53681030	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs114368235	chr19:53681088-53681089	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs531904489	chr19:53681132-53681133	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs192245792	chr19:53681143-53681144	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs561757491	chr19:53681167-53681168	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs76427513	chr19:53681189-53681190	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs547769311	chr19:53681262-53681263	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs370555927	chr19:53681276-53681277	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs143453119	chr19:53681310-53681311	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs560259362	chr19:53681315-53681316	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs201730843	chr19:53681354-53681355	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs369785058	chr19:53681358-53681359	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs568334042	chr19:53681366-53681367	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs34794262	chr19:53681370-53681371	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs546072323	chr19:53681406-53681407	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs3934841	chr19:53681442-53681443	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs569835713	chr19:53681475-53681476	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	20459607	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:1569 , 50 per page) page: 1 2 3 4 5 6 7 ... 32

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53664800-53695400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr19:53668800-53683000	Weak transcription	Pancreas	Pancrea
3	chr19:53669400-53685800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr19:53669400-53695600	Weak transcription	Brain Germinal Matrix	brain
5	chr19:53669600-53682800	Weak transcription	Left Ventricle	heart
6	chr19:53669600-53682800	Weak transcription	Osteobl	bone
7	chr19:53670000-53695400	Weak transcription	Right Ventricle	heart
8	chr19:53670200-53695200	Weak transcription	Fetal Brain Female	brain
9	chr19:53670600-53682800	Weak transcription	Dnd41	blood
10	chr19:53672200-53686400	Weak transcription	Colon Smooth Muscle	Colon
11	chr19:53673600-53688200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr19:53674000-53681000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr19:53674000-53682800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr19:53674000-53695400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr19:53674000-53695600	Weak transcription	Brain Angular Gyrus	brain
16	chr19:53674000-53695600	Weak transcription	Brain Anterior Caudate	brain
17	chr19:53674200-53693600	Weak transcription	Brain Hippocampus Middle	brain
18	chr19:53674200-53693600	Weak transcription	Fetal Muscle Leg	muscle
19	chr19:53675200-53682400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr19:53676600-53693600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr19:53677000-53681600	ZNF genes & repeats	Primary B cells from cord blood	blood
22	chr19:53677200-53685800	Weak transcription	Fetal Stomach	stomach
23	chr19:53677400-53682800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr19:53677400-53685000	Weak transcription	Placenta	Placenta
25	chr19:53677600-53682600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr19:53677600-53682600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr19:53677600-53682800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr19:53677600-53682800	Weak transcription	Adipose Nuclei	Adipose
29	chr19:53677600-53683000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr19:53677600-53686400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr19:53677600-53695600	Weak transcription	Fetal Lung	lung
32	chr19:53677800-53682000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr19:53677800-53682600	Weak transcription	Ovary	ovary
34	chr19:53678000-53682000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr19:53678000-53682000	Weak transcription	NHDF-Ad	bronchial
36	chr19:53678000-53682600	Weak transcription	Thymus	Thymus
37	chr19:53678800-53695800	Weak transcription	Aorta	Aorta
38	chr19:53679200-53683000	Weak transcription	Primary T cells from cord blood	blood
39	chr19:53679800-53686600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr19:53680000-53682800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr19:53680000-53684800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr19:53680200-53682600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr19:53680200-53695400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr19:53680400-53683000	Weak transcription	Spleen	Spleen
45	chr19:53680600-53695600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr19:53681000-53681600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr19:53681000-53683400	Strong transcription	Stomach Smooth Muscle	stomach
48	chr19:53681000-53685600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr19:53681000-53695600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr19:53681200-53695400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links