Variant report

Variant	nsv1065604
Chromosome Location	chr19:24427991-24596738
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:121483249..121485033-chr19:24456855..24458356,4	K562	blood:
2	chr1:121483249..121485033-chr19:24456836..24458356,4	K562	blood:

Extended variants
information (count: 11244 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:11244 , 50 per page) page: 1 2 3 4 5 6 7 ... 225

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs536541993	chr19:24435011-24435012	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs556239357	chr19:24435098-24435099	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs111445847	chr19:24435106-24435107	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs138199489	chr19:24435118-24435119	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs535388747	chr19:24435164-24435165	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs547080285	chr19:24435169-24435170	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs565715600	chr19:24435178-24435179	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs77773316	chr19:24435205-24435206	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs76514498	chr19:24435206-24435207	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs539136277	chr19:24435209-24435210	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs75603870	chr19:24435216-24435217	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs76787340	chr19:24435218-24435219	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs78451679	chr19:24435220-24435221	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs80032061	chr19:24435225-24435226	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs77071735	chr19:24435227-24435228	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs71359980	chr19:24435228-24435229	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs556482970	chr19:24435233-24435234	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs576016436	chr19:24435234-24435235	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs75804925	chr19:24435236-24435237	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs75672584	chr19:24435237-24435238	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs575806785	chr19:24435249-24435250	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs536864515	chr19:24435254-24435255	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs74726463	chr19:24435265-24435266	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs74824162	chr19:24435269-24435270	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs77164723	chr19:24435273-24435274	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs80295196	chr19:24435275-24435276	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs370003956	chr19:24435279-24435280	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs79689675	chr19:24435289-24435290	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs79169949	chr19:24435292-24435293	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs74471711	chr19:24435293-24435294	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs79656332	chr19:24435295-24435296	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs77749321	chr19:24435299-24435300	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs79809256	chr19:24435336-24435337	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs76144114	chr19:24435338-24435339	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs555202494	chr19:24435339-24435340	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs77106557	chr19:24435340-24435341	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs79108545	chr19:24435341-24435342	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs79291301	chr19:24435347-24435348	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs149597491	chr19:24435357-24435358	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs182378305	chr19:24435405-24435406	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs545102564	chr19:24435440-24435441	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs565354515	chr19:24435456-24435457	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs560278731	chr19:24435470-24435471	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs572464944	chr19:24435476-24435477	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs572439661	chr19:24435492-24435493	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs569509453	chr19:24435522-24435523	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs535475433	chr19:24435531-24435532	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs541180744	chr19:24435532-24435533	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs372414115	chr19:24435562-24435563	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs189346740	chr19:24435607-24435608	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
Lung cancer	18438408	CNVD

Chromatin state (count:286 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24435000-24440000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:24436000-24439600	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:24436600-24436800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr19:24440600-24444800	ZNF genes & repeats	Liver	Liver
5	chr19:24442400-24445000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr19:24443000-24446200	ZNF genes & repeats	Adipose Nuclei	Adipose
7	chr19:24444000-24444800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
8	chr19:24444800-24446400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr19:24445200-24445400	ZNF genes & repeats	Brain Substantia Nigra	brain
10	chr19:24445400-24445800	Active TSS	Brain Substantia Nigra	brain
11	chr19:24450200-24451400	ZNF genes & repeats	Adipose Nuclei	Adipose
12	chr19:24451400-24451600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
13	chr19:24455800-24462600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr19:24457000-24458600	ZNF genes & repeats	Liver	Liver
15	chr19:24457600-24458600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
16	chr19:24468000-24473400	ZNF genes & repeats	Liver	Liver
17	chr19:24468400-24496800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
18	chr19:24468600-24477400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
19	chr19:24469200-24504400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr19:24472000-24475000	ZNF genes & repeats	Adipose Nuclei	Adipose
21	chr19:24472800-24473200	Active TSS	Aorta	Aorta
22	chr19:24473200-24474200	Weak transcription	Aorta	Aorta
23	chr19:24474000-24474800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
24	chr19:24474200-24474400	ZNF genes & repeats	Brain Substantia Nigra	brain
25	chr19:24474200-24474400	ZNF genes & repeats	Dnd41	blood
26	chr19:24474200-24474400	ZNF genes & repeats	Osteobl	bone
27	chr19:24474200-24474600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
28	chr19:24474200-24474600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
29	chr19:24474200-24474800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
30	chr19:24474200-24474800	ZNF genes & repeats	Primary T cells from cord blood	blood
31	chr19:24474200-24474800	Active TSS	Aorta	Aorta
32	chr19:24474200-24474800	ZNF genes & repeats	NH-A	brain
33	chr19:24474200-24475000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
34	chr19:24474400-24474800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr19:24474600-24474800	ZNF genes & repeats	HepG2	liver
36	chr19:24474600-24474800	ZNF genes & repeats	HUVEC	blood vessel
37	chr19:24474600-24474800	ZNF genes & repeats	K562	blood
38	chr19:24475000-24475600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr19:24475600-24504400	ZNF genes & repeats	Liver	Liver
40	chr19:24478600-24484600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr19:24480000-24493400	ZNF genes & repeats	Adipose Nuclei	Adipose
42	chr19:24480800-24481400	Active TSS	Aorta	Aorta
43	chr19:24481600-24494000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
44	chr19:24484400-24485000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr19:24484800-24486000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
46	chr19:24486400-24487200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
47	chr19:24486400-24490800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
48	chr19:24491800-24492400	Active TSS	Aorta	Aorta
49	chr19:24495600-24497600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
50	chr19:24499000-24502200	ZNF genes & repeats	Adipose Nuclei	Adipose

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