Variant report
Variant | nsv1067251 |
---|---|
Chromosome Location | chr16:32554227-33097410 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:3986)
- CpG islands (count:2259)
- Chromatin interactive region (count:5)
- LncRNA region (count:47)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr16:32817100-32817669 | HepG2 | liver: | n/a | n/a |
2 | ARID3A | chr16:32817496-32817662 | K562 | blood: | n/a | n/a |
3 | ARID3A | chr16:32818363-32818754 | HepG2 | liver: | n/a | n/a |
4 | ARID3A | chr16:32657798-32657972 | HepG2 | liver: | n/a | n/a |
5 | ARID3A | chr16:32590243-32590613 | K562 | blood: | n/a | n/a |
6 | ARID3A | chr16:32655940-32657281 | HepG2 | liver: | n/a | n/a |
7 | ARID3A | chr16:32876710-32876890 | HepG2 | liver: | n/a | n/a |
8 | ATF1 | chr16:32559923-32560294 | K562 | blood: | n/a | n/a |
9 | ATF1 | chr16:32568174-32568349 | K562 | blood: | n/a | n/a |
10 | ATF1 | chr16:32583782-32583972 | K562 | blood: | n/a | n/a |
11 | ATF1 | chr16:32832855-32832989 | K562 | blood: | n/a | n/a |
12 | ATF1 | chr16:32873309-32873509 | K562 | blood: | n/a | n/a |
13 | ATF1 | chr16:32558594-32558903 | K562 | blood: | n/a | n/a |
14 | ATF3 | chr16:32876765-32876921 | K562 | blood: | n/a | n/a |
15 | ATF3 | chr16:32993758-32993903 | K562 | blood: | n/a | n/a |
16 | ATF3 | chr16:32909214-32909368 | K562 | blood: | n/a | n/a |
17 | BACH1 | chr16:32553830-32554374 | K562 | blood: | n/a | n/a |
18 | BACH1 | chr16:32590237-32590618 | K562 | blood: | n/a | n/a |
19 | BACH1 | chr16:32639174-32639436 | H1-hESC | embryonic stem cell: | n/a | n/a |
20 | BATF | chr16:33020846-33021096 | GM12878 | blood: | n/a | n/a |
21 | BATF | chr16:33041862-33042137 | GM12878 | blood: | n/a | n/a |
22 | BATF | chr16:32909165-32909547 | GM12878 | blood: | n/a | n/a |
23 | BATF | chr16:32846943-32847213 | GM12878 | blood: | n/a | n/a |
24 | BATF | chr16:33043855-33044053 | GM12878 | blood: | n/a | n/a |
25 | BATF | chr16:32993933-32994319 | GM12878 | blood: | n/a | n/a |
26 | BATF | chr16:33082292-33082557 | GM12878 | blood: | n/a | n/a |
27 | BATF | chr16:33051517-33051717 | GM12878 | blood: | n/a | n/a |
28 | BATF | chr16:33092972-33093212 | GM12878 | blood: | n/a | n/a |
29 | BATF | chr16:33042432-33043800 | GM12878 | blood: | n/a | n/a |
30 | BATF | chr16:32805422-32805612 | GM12878 | blood: | n/a | n/a |
31 | BATF | chr16:33087718-33087908 | GM12878 | blood: | n/a | n/a |
32 | BATF | chr16:32801669-32801940 | GM12878 | blood: | n/a | n/a |
33 | BATF | chr16:32847350-32847649 | GM12878 | blood: | n/a | n/a |
34 | BATF | chr16:33002463-33002715 | GM12878 | blood: | n/a | n/a |
35 | BATF | chr16:33044491-33044914 | GM12878 | blood: | n/a | chr16:33044727-33044738 |
36 | BATF | chr16:33052317-33052590 | GM12878 | blood: | n/a | n/a |
37 | BATF | chr16:32727057-32727270 | GM12878 | blood: | n/a | n/a |
38 | BATF | chr16:33051640-33051829 | GM12878 | blood: | n/a | n/a |
39 | BATF | chr16:32805420-32805638 | GM12878 | blood: | n/a | n/a |
40 | BATF | chr16:32848099-32848439 | GM12878 | blood: | n/a | n/a |
41 | BATF | chr16:32652782-32652951 | GM12878 | blood: | n/a | n/a |
42 | BATF | chr16:33048704-33048907 | GM12878 | blood: | n/a | n/a |
43 | BATF | chr16:33046034-33046402 | GM12878 | blood: | n/a | n/a |
44 | BATF | chr16:32944783-32945170 | GM12878 | blood: | n/a | n/a |
45 | BATF | chr16:33052311-33052561 | GM12878 | blood: | n/a | n/a |
46 | BATF | chr16:33044181-33044885 | GM12878 | blood: | n/a | chr16:33044727-33044738 |
47 | BATF | chr16:33091390-33091661 | GM12878 | blood: | n/a | n/a |
48 | BATF | chr16:33042934-33043504 | GM12878 | blood: | n/a | n/a |
49 | BATF | chr16:32800340-32800564 | GM12878 | blood: | n/a | n/a |
50 | BATF | chr16:33077153-33077342 | GM12878 | blood: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr16:32934020-32934070 | RPTEC | kidney: | n/a |
2 | chr16:32823000-32823050 | GM12878 | blood: | n/a |
3 | chr16:32934020-32934070 | RPTEC | kidney: | n/a |
4 | chr16:32823000-32823050 | GM12878 | blood: | n/a |
5 | chr16:32936895-32936945 | SK-N-SH | brain: | n/a |
6 | chr16:32937040-32937090 | MCF-7 | breast: | n/a |
7 | chr16:32823584-32823634 | PFSK-1 | brain: | n/a |
8 | chr16:33038922-33038972 | HepG2 | liver: | n/a |
9 | chr16:33040206-33040256 | HAEpiC | amniotic membrane: | n/a |
10 | chr16:32936664-32936714 | HL-60 | blood: | n/a |
11 | chr16:32898433-32898483 | HAEpiC | amniotic membrane: | n/a |
12 | chr16:33071657-33071707 | GM12891 | blood: | n/a |
13 | chr16:32822612-32822662 | AG10803 | skin: | n/a |
14 | chr16:33038922-33038972 | H1-hESC | embryonic stem cell: | embryo |
15 | chr16:33071657-33071707 | HEK293 | kidney: | embryo |
16 | chr16:32857551-32857601 | K562 | blood: | n/a |
17 | chr16:33070632-33070682 | ECC-1 | luminal epithelium: | n/a |
18 | chr16:33038922-33038972 | AoSMC | blood vessel: | n/a |
19 | chr16:32822392-32822442 | HL-60 | blood: | n/a |
20 | chr16:32599417-32599467 | AG09309 | skin: | n/a |
21 | chr16:32940983-32941033 | HRCEpiC | kidney: | n/a |
22 | chr16:32822480-32822530 | HIPEpiC | eye: | n/a |
23 | chr16:33039897-33039947 | HL-60 | blood: | n/a |
24 | chr16:32823000-32823050 | PFSK-1 | brain: | n/a |
25 | chr16:32823000-32823050 | GM19239 | blood: | n/a |
26 | chr16:33070632-33070682 | NH-A | brain: | n/a |
27 | chr16:32823000-32823050 | LNCaP | prostate: | n/a |
28 | chr16:33071657-33071707 | HMEC | breast: | n/a |
29 | chr16:32858846-32858896 | PFSK-1 | brain: | n/a |
30 | chr16:32895392-32895442 | HCT-116 | colon: | n/a |
31 | chr16:33039897-33039947 | HRCEpiC | kidney: | n/a |
32 | chr16:32858241-32858291 | T-47D | breast: | n/a |
33 | chr16:32822480-32822530 | AG09319 | gingival: | n/a |
34 | chr16:32822392-32822442 | IMR90 | lung: | fetal |
35 | chr16:32898433-32898483 | PrEC | prostate: | n/a |
36 | chr16:32662543-32662593 | IMR90 | lung: | fetal |
37 | chr16:32823584-32823634 | NHDF-neo | bronchial: | n/a |
38 | chr16:33071657-33071707 | SK-N-MC | brain: | n/a |
39 | chr16:32936664-32936714 | HPAEpiC | pulmonary alveolar: | n/a |
40 | chr16:32934020-32934070 | HAEpiC | amniotic membrane: | n/a |
41 | chr16:32858241-32858291 | A549 | lung: | n/a |
42 | chr16:32823584-32823634 | BE2_C | brain: | n/a |
43 | chr16:33038657-33038707 | AG09309 | skin: | n/a |
44 | chr16:33070632-33070682 | HL-60 | blood: | n/a |
45 | chr16:32857007-32857057 | MCF10A-Er-Src | breast: | n/a |
46 | chr16:33039897-33039947 | HAEpiC | amniotic membrane: | n/a |
47 | chr16:32822392-32822442 | HIPEpiC | eye: | n/a |
48 | chr16:32895392-32895442 | LNCaP | prostate: | n/a |
49 | chr16:32898433-32898483 | HPAEpiC | pulmonary alveolar: | n/a |
50 | chr16:33044270-33044320 | GM12891 | blood: | n/a |
(count:5 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr16:32951293..32951850-chr16:33618657..33619267,2 | MCF-7 | breast: | |
2 | chr16:32993835..32994354-chr16:33619041..33619624,2 | MCF-7 | breast: | |
3 | chr16:32876380..32877212-chr16:32951315..32951834,2 | MCF-7 | breast: | |
4 | chr16:32876653..32877208-chr16:33618895..33619446,2 | MCF-7 | breast: | |
5 | chr16:32876380..32877212-chr16:32951315..32951834,2 | MCF-7 | breast: |
(count:47 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-RP11-1277H1.1.1-9 | chr16:32989910-32990212 | NONHSAT142058 |
2 | lnc-AC133485.1.1-2 | chr16:32611620-32611754 | NONHSAT142021 |
3 | lnc-AC133485.1.1-3 | chr16:32661637-32661722 | ENSG00000261569.1 |
4 | lnc-RP11-1277H1.1.1-4 | chr16:32899139-32900195 | ENSG00000214614.2 |
5 | lnc-AC133485.1.1-4 | chr16:32689961-32690152 | ENSG00000260974.1 |
6 | lnc-RP11-1277H1.1.1-3 | chr16:33007600-33008091 | ENSG00000260921.1 |
7 | lnc-RP11-1277H1.1.1-4 | chr16:32898658-32898880 | ENSG00000214614.2 |
8 | lnc-AC133485.1.1-3 | chr16:32676974-32677014 | ENSG00000260311.1 |
9 | lnc-RP11-1277H1.1.1-4 | chr16:32898658-32898850 | ENSG00000214614.2 |
10 | lnc-TP53TG3-1 | chr16:32752331-32752415 | ENSG00000260845.1 |
11 | lnc-AC133485.1.1-2 | chr16:32626088-32626324 | XLOC_011694 |
12 | lnc-AC133485.1.1-3 | chr16:32661076-32661211 | ENSG00000261569.1 |
13 | lnc-TP53TG3-17 | chr16:32943089-32943890 | NONHSAT142053 |
14 | lnc-AC133485.1.1-2 | chr16:32619006-32619076 | NONHSAT142022 |
15 | lnc-AC133485.1.1-2 | chr16:32619515-32619545 | NONHSAT142022 |
16 | lnc-TP53TG3-11 | chr16:32750948-32750981 | NONHSAT142041 |
17 | lnc-AC133485.1.1-2 | chr16:32616227-32616285 | NONHSAT142022 |
18 | lnc-AC133485.1.1-3 | chr16:32677470-32677854 | ENSG00000260311.1 |
19 | lnc-AC133485.1.1-2 | chr16:32626742-32626953 | XLOC_011694 |
20 | lnc-RP11-1277H1.1.1-4 | chr16:32898371-32898495 | ENSG00000214614.2 |
21 | lnc-AC133485.1.1-2 | chr16:32616227-32616285 | NONHSAT142021 |
22 | lnc-AC133485.1.1-2 | chr16:32626742-32626807 | NONHSAT142022 |
23 | lnc-TP53TG3-1 | chr16:32747230-32748010 | ENSG00000260845.1 |
24 | lnc-RP11-1277H1.1.1-11 | chr16:32926544-32926857 | NONHSAT142052 |
25 | lnc-RP11-1277H1.1.1-4 | chr16:32897796-32898008 | ENSG00000214614.2 |
26 | lnc-RP11-1277H1.1.1-3 | chr16:33007112-33007188 | ENSG00000260921.1 |
27 | lnc-AC133485.1.1-3 | chr16:32674902-32675277 | ENSG00000261569.1 |
28 | lnc-TP53TG3-11 | chr16:32751296-32751487 | NONHSAT142041 |
29 | lnc-RP11-1277H1.1.1-4 | chr16:32897547-32898093 | ENSG00000214614.2 |
30 | lnc-RP11-1277H1.1.1-4 | chr16:32898658-32899949 | ENSG00000214614.2 |
31 | lnc-RP11-1277H1.1.1-4 | chr16:32897778-32897912 | ENSG00000214614.2 |
32 | lnc-AC133485.1.1-2 | chr16:32619515-32619547 | NONHSAT142021 |
33 | lnc-RP11-1277H1.1.1-3 | chr16:33006858-33006938 | ENSG00000260921.1 |
34 | lnc-RP11-1277H1.1.1-4 | chr16:32896515-32896578 | ENSG00000214614.2 |
35 | lnc-AC133485.1.1-2 | chr16:32626287-32626324 | NONHSAT142022 |
36 | lnc-RP11-1277H1.1.1-11 | chr16:32926395-32926440 | NONHSAT142052 |
37 | lnc-AC133485.1.1-3 | chr16:32661463-32661540 | ENSG00000261569.1 |
38 | lnc-AC133485.1.1-2 | chr16:32613844-32613953 | NONHSAT142021 |
39 | lnc-AC133485.1.1-3 | chr16:32660514-32660649 | ENSG00000261569.1 |
40 | lnc-AC133485.1.1-3 | chr16:32661637-32661722 | ENSG00000261569.1 |
41 | lnc-TP53TG3-5 | chr16:33054930-33055459 | ENSG00000260141.1 |
42 | lnc-AC133485.1.1-2 | chr16:32613896-32614018 | NONHSAT142022 |
43 | lnc-AC133485.1.1-2 | chr16:32616957-32617035 | NONHSAT142021 |
44 | lnc-AC133485.1.1-4 | chr16:32686358-32686427 | ENSG00000260974.1 |
45 | lnc-AC133485.1.1-2 | chr16:32618849-32619005 | NONHSAT142021 |
46 | lnc-AC133485.1.1-2 | chr16:32626903-32626960 | NONHSAT142022 |
47 | lnc-RP11-1277H1.1.1-9 | chr16:32989782-32989827 | NONHSAT142058 |
No data |
No data |
Variant related genes | Relation type |
---|---|
IGHV3OR16-8 | TF binding region |
ENSG00000260864 | TF binding region |
IGHV2OR16-5 | TF binding region |
ENSG00000261263 | TF binding region |
TP53TG3 | TF binding region |
ENSG00000259966 | TF binding region |
ENSG00000261108 | TF binding region |
ENSG00000260610 | TF binding region |
ENSG00000260158 | TF binding region |
IGHV3OR16-15 | TF binding region |
ENSG00000261719 | TF binding region |
ENSG00000261391 | TF binding region |
ENSG00000260974 | TF binding region |
ENSG00000261111 | TF binding region |
ENSG00000214614 | TF binding region |
IGHV3OR16-10 | TF binding region |
ENSG00000260047 | TF binding region |
SLC6A10P | TF binding region |
ENSG00000261259 | TF binding region |
HERC2P5 | TF binding region |
IGHV1OR16-2 | TF binding region |
IGHV3OR16-6 | TF binding region |
ENSG00000261569 | TF binding region |
ENSG00000262187 | TF binding region |
ENSG00000260845 | TF binding region |
ENSG00000260921 | TF binding region |
ENSG00000259934 | TF binding region |
ENSG00000260900 | TF binding region |
IGHV1OR16-4 | TF binding region |
ENSG00000260311 | TF binding region |
IGHV3OR16-8 | CpG island |
ENSG00000260864 | CpG island |
IGHV2OR16-5 | CpG island |
ENSG00000261263 | CpG island |
TP53TG3 | CpG island |
ENSG00000259966 | CpG island |
ENSG00000261108 | CpG island |
ENSG00000260610 | CpG island |
ENSG00000260158 | CpG island |
IGHV3OR16-15 | CpG island |
ENSG00000261719 | CpG island |
ENSG00000261391 | CpG island |
ENSG00000260974 | CpG island |
ENSG00000261111 | CpG island |
ENSG00000214614 | CpG island |
IGHV3OR16-10 | CpG island |
ENSG00000260047 | CpG island |
SLC6A10P | CpG island |
ENSG00000261259 | CpG island |
HERC2P5 | CpG island |
IGHV1OR16-2 | CpG island |
IGHV3OR16-6 | CpG island |
ENSG00000261569 | CpG island |
ENSG00000262187 | CpG island |
ENSG00000260845 | CpG island |
ENSG00000260921 | CpG island |
ENSG00000259934 | CpG island |
ENSG00000260900 | CpG island |
IGHV1OR16-4 | CpG island |
ENSG00000260311 | CpG island |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs548609307 | chr16:32554238-32554239 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
2 | rs560479617 | chr16:32554253-32554254 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
3 | rs528407907 | chr16:32554267-32554268 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
4 | rs546886769 | chr16:32554271-32554272 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
5 | rs142875489 | chr16:32554319-32554320 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
6 | rs113290099 | chr16:32554320-32554321 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
7 | rs571542679 | chr16:32554330-32554331 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
8 | rs77852414 | chr16:32554331-32554332 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
9 | rs34756831 | chr16:32554356-32554357 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
10 | rs4106210 | chr16:32554364-32554365 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
11 | rs113739466 | chr16:32554389-32554390 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
12 | rs550492028 | chr16:32554409-32554410 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
13 | rs568980427 | chr16:32554416-32554417 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
14 | rs535920064 | chr16:32554444-32554445 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
15 | rs4045332 | chr16:32554452-32554453 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
16 | rs3969554 | chr16:32554486-32554487 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
17 | rs554159514 | chr16:32554499-32554500 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
18 | rs572478714 | chr16:32554507-32554508 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
19 | rs533524640 | chr16:32554510-32554511 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
20 | rs558858259 | chr16:32554512-32554513 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
21 | rs4045330 | chr16:32554545-32554546 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
22 | rs577461050 | chr16:32554558-32554559 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
23 | rs544839906 | chr16:32554570-32554571 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
24 | rs55711349 | chr16:32554578-32554579 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
25 | rs574883079 | chr16:32554588-32554589 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
26 | rs542307187 | chr16:32554624-32554625 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
27 | rs560495363 | chr16:32554652-32554653 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
28 | rs76672705 | chr16:32554653-32554654 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
29 | rs377616940 | chr16:32554658-32554659 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
30 | rs2520044 | chr16:32554672-32554673 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
31 | rs552587846 | chr16:32554679-32554680 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
32 | rs565224085 | chr16:32554688-32554689 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
33 | rs532301184 | chr16:32554689-32554690 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
34 | rs375147107 | chr16:32554714-32554715 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
35 | rs568924497 | chr16:32554729-32554730 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
36 | rs2335648 | chr16:32554730-32554731 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
37 | rs2878476 | chr16:32554733-32554734 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
38 | rs2335647 | chr16:32554753-32554754 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
39 | rs2878475 | chr16:32554764-32554765 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
40 | rs535964710 | chr16:32554769-32554770 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
41 | rs78738000 | chr16:32554790-32554791 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
42 | rs2335646 | chr16:32554823-32554824 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
43 | rs2335645 | chr16:32554843-32554844 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
44 | rs2335644 | chr16:32554859-32554860 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
45 | rs72483491 | chr16:32554873-32554874 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
46 | rs149298562 | chr16:32554888-32554889 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
47 | rs74577121 | chr16:32554889-32554890 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
48 | rs75005954 | chr16:32554902-32554903 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
49 | rs58088096 | chr16:32554903-32554904 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
50 | rs77937429 | chr16:32554966-32554967 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Hodgkin''s lymphoma | 20651079 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Melanoma | 18172304 | CNVD |
Breast cancer | 16608533 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 17133270 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Lung adenocarcinoma | 17086460 | CNVD |
Lung cancer | 17086460 | CNVD |
Autism | 22566537 | CNVD |
Intellectual disability | 22566537 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 17603634 | CNVD |
Breast cancer | 21264507 | CNVD |
Cervical cancer | 21063398 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Autism | 19415332 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Schizophrenia | 22958593 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Autism | 22495311 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Breast cancer | 21858162 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Mental retardation | 19951919 | CNVD |
Colorectal cancer | 16272173 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Breast cancer | 21785460 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Breast cancer | 21990379 | CNVD |
Astrocytoma | 22246337 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Epilepsy | 22499536 | CNVD |
Attention deficit hyperactivity disorder | 21324949 | CNVD |
Austim spectrum disorder | 21302340 | CNVD |
Autism | 22513405 | CNVD |
Autism | 22958593 | CNVD |
Autism | 18184952 | CNVD |
Autism | 19966786 | CNVD |
Autism | 21394203 | CNVD |
Autism | 21969575 | CNVD |
Autism | 22241247 | CNVD |
Autism | 20970697 | CNVD |
Autism | 20942916 | CNVD |
Epilepsy | 20970697 | CNVD |
Intellectual disability | 22045946 | CNVD |
Mental retardation | 19966786 | CNVD |
Developmental delay | 20808231 | CNVD |
Obesity | 20808231 | CNVD |
Autism | 18923514 | CNVD |
Obesity | 21881559 | CNVD |
Obesity | 21956041 | CNVD |
Autism | 20659124 | CNVD |
Mental retardation | 21062444 | CNVD |
Schizophrenia | 20587603 | CNVD |
Schizophrenia | 21285140 | CNVD |
Schizophrenia | 22885689 | CNVD |
Schizophrenia | 20553308 | CNVD |
Schizophrenia | 20970697 | CNVD |
Schizophrenia | 20433910 | CNVD |
Schizophrenia | 22241247 | CNVD |
Autism | 19242545 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Intracranial ependymoma | 16609018 | CNVD |
Schizophrenia | 21399695 | CNVD |
Autism | 21956041 | CNVD |
Disorders of sex development | 21048976 | CNVD |
Autism | 22067053 | CNVD |
Autism | 18156158 | CNVD |
Mental retardation | 20152051 | CNVD |
Autism | 19218893 | CNVD |
Autism | 21289514 | CNVD |
Schizophrenia | 19855392 | CNVD |
neurodevelopmental Syndrome | 20503337 | CNVD |
Benign familial neonatal-infantile seizures | 21060786 | CNVD |
Low-grade fibromyxoid sarcoma | 0 | CNVD |
Cancer | 21183584 | CNVD |
Low-grade fibromyxoid sarcoma | 21536545 | CNVD |
Breast cancer | 21045282 | CNVD |
Neuroblastoma | 20406844 | CNVD |
Autism | 19050728 | CNVD |
Epilepsy | 20923578 | CNVD |
Psychiatric disorder | 19050728 | CNVD |
Schizophrenia | 19348701 | CNVD |
Attention deficit hyperactivity disorder | 19097825 | CNVD |
Autism | 20964600 | CNVD |
Schizophrenia | 19955444 | CNVD |
Schizophrenia | 18990708 | CNVD |
Schizophrenia | 19571808 | CNVD |
Breast cancer | 20409316 | CNVD |
Severe combined immunodeficiency | 19097825 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Autism | 18522746 | CNVD |
Sezary syndrome | 18413736 | CNVD |
Wilms tumour | 21544195 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Cancer | 20164920 | CNVD |
Autism | 19287141 | CNVD |
Schizophrenia | 20967226 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Breast cancer | 21364760 | CNVD |
Breast cancer | 17142309 | CNVD |
Cancer | 20164919 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Non-syndromic sensorineural hearing loss | 22297974 | CNVD |
Lung cancer | 18438408 | CNVD |
Autism | 21865298 | CNVD |
Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
Breast cancer | 21509527 | CNVD |
Stenocardia | 21860640 | CNVD |
Vasospasm | 21860640 | CNVD |
Breast cancer | 22522925 | CNVD |
Melanoma | 20877625 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:32511200-32562600 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
2 | chr16:32513800-32564000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
3 | chr16:32513800-32572000 | ZNF genes & repeats | Liver | Liver |
4 | chr16:32514600-32561200 | ZNF genes & repeats | HUES64 Cell Line | embryonic stem cell |
5 | chr16:32515200-32562800 | ZNF genes & repeats | Adipose Nuclei | Adipose |
6 | chr16:32529400-32570400 | ZNF genes & repeats | Duodenum Smooth Muscle | Duodenum |
7 | chr16:32536800-32565200 | ZNF genes & repeats | Psoas Muscle | Psoas |
8 | chr16:32544800-32555200 | ZNF genes & repeats | Fetal Brain Male | brain |
9 | chr16:32545800-32554600 | ZNF genes & repeats | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
10 | chr16:32551200-32559000 | ZNF genes & repeats | Primary T helper cells PMA-I stimulated | -- |
11 | chr16:32551800-32555000 | ZNF genes & repeats | iPS-18 Cell Line | embryonic stem cell |
12 | chr16:32552200-32555200 | ZNF genes & repeats | Brain Anterior Caudate | brain |
13 | chr16:32552600-32556200 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
14 | chr16:32552800-32558400 | ZNF genes & repeats | Monocytes-CD14+_RO01746 | blood |
15 | chr16:32554000-32558400 | ZNF genes & repeats | HUES6 Cell Line | embryonic stem cell |
16 | chr16:32554200-32561400 | ZNF genes & repeats | Duodenum Mucosa | Duodenum |
17 | chr16:32555800-32556200 | ZNF genes & repeats | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
18 | chr16:32556200-32560200 | ZNF genes & repeats | Sigmoid Colon | Sigmoid Colon |
19 | chr16:32557200-32562200 | ZNF genes & repeats | Fetal Brain Male | brain |
20 | chr16:32557600-32558600 | ZNF genes & repeats | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
21 | chr16:32557600-32560800 | Active TSS | Right Atrium | heart |
22 | chr16:32557800-32558200 | Active TSS | Aorta | Aorta |
23 | chr16:32557800-32558600 | ZNF genes & repeats | Primary T cells from cord blood | blood |
24 | chr16:32558200-32566800 | Weak transcription | Aorta | Aorta |
25 | chr16:32559200-32562600 | ZNF genes & repeats | iPS-20b Cell Line | embryonic stem cell |
26 | chr16:32559600-32561000 | ZNF genes & repeats | iPS-18 Cell Line | embryonic stem cell |
27 | chr16:32559600-32562800 | ZNF genes & repeats | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
28 | chr16:32559800-32560800 | ZNF genes & repeats | Brain Angular Gyrus | brain |
29 | chr16:32559800-32561400 | ZNF genes & repeats | Brain Substantia Nigra | brain |
30 | chr16:32560000-32560200 | ZNF genes & repeats | Pancreatic Islets | Pancreatic Islet |
31 | chr16:32560000-32560200 | ZNF genes & repeats | HMEC | breast |
32 | chr16:32560000-32560200 | ZNF genes & repeats | HSMM | muscle |
33 | chr16:32560000-32560200 | ZNF genes & repeats | HSMMtube | muscle |
34 | chr16:32560000-32560200 | ZNF genes & repeats | HUVEC | blood vessel |
35 | chr16:32560000-32560200 | ZNF genes & repeats | NHLF | lung |
36 | chr16:32561000-32562200 | ZNF genes & repeats | Colon Smooth Muscle | Colon |
37 | chr16:32561800-32562000 | ZNF genes & repeats | Brain Inferior Temporal Lobe | brain |
38 | chr16:32566400-32567400 | ZNF genes & repeats | Psoas Muscle | Psoas |
39 | chr16:32566800-32567600 | Active TSS | Aorta | Aorta |
40 | chr16:32567200-32569800 | ZNF genes & repeats | Brain Substantia Nigra | brain |
41 | chr16:32568000-32570400 | ZNF genes & repeats | HUES64 Cell Line | embryonic stem cell |
42 | chr16:32569200-32572200 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
43 | chr16:32569800-32571400 | ZNF genes & repeats | Adipose Nuclei | Adipose |
44 | chr16:32569800-32572200 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
45 | chr16:32570200-32572200 | ZNF genes & repeats | iPS-20b Cell Line | embryonic stem cell |
46 | chr16:32570800-32572200 | ZNF genes & repeats | Fetal Brain Male | brain |
47 | chr16:32574400-32574600 | ZNF genes & repeats | iPS-20b Cell Line | embryonic stem cell |
48 | chr16:32575200-32578000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
49 | chr16:32576000-32581200 | ZNF genes & repeats | Liver | Liver |
50 | chr16:32576200-32577000 | ZNF genes & repeats | HUES64 Cell Line | embryonic stem cell |