Variant report

Variant	nsv1067261
Chromosome Location	chr19:56820571-56854916
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1254)
CpG islands
(count:977)
Chromatin interactive
region (count:67)
LncRNA
region (count:24)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1254 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:56844165-56844323	HepG2	liver:	n/a	n/a
2	ARID3A	chr19:56828061-56828366	HepG2	liver:	n/a	n/a
3	ARID3A	chr19:56821009-56821236	K562	blood:	n/a	n/a
4	ARID3A	chr19:56844745-56845228	HepG2	liver:	n/a	n/a
5	ARID3A	chr19:56825504-56826158	K562	blood:	n/a	n/a
6	ARID3A	chr19:56833099-56833664	K562	blood:	n/a	n/a
7	ARID3A	chr19:56825542-56826504	HepG2	liver:	n/a	n/a
8	ATF1	chr19:56825521-56827047	K562	blood:	n/a	n/a
9	ATF1	chr19:56844915-56845222	K562	blood:	n/a	n/a
10	ATF1	chr19:56832654-56833000	K562	blood:	n/a	n/a
11	ATF1	chr19:56833240-56833667	K562	blood:	n/a	n/a
12	ATF2	chr19:56825748-56826342	GM12878	blood:	n/a	chr19:56826007-56826018
13	ATF2	chr19:56825811-56826274	H1-hESC	embryonic stem cell:	n/a	chr19:56826007-56826018
14	ATF2	chr19:56825630-56826289	GM12878	blood:	n/a	chr19:56826007-56826018
15	ATF3	chr19:56825783-56826224	K562	blood:	n/a	chr19:56826006-56826019 chr19:56826009-56826019 chr19:56826005-56826018 chr19:56826006-56826016 chr19:56826008-56826016 chr19:56825997-56826017 chr19:56826009-56826020 chr19:56826009-56826017 chr19:56826009-56826016 chr19:56826008-56826028 chr19:56826006-56826017 chr19:56826009-56826019 chr19:56826006-56826019 chr19:56826005-56826020 chr19:56826007-56826020 chr19:56826008-56826019 chr19:56826007-56826018
16	ATF3	chr19:56820863-56821361	H1-hESC	embryonic stem cell:	n/a	n/a
17	ATF3	chr19:56826150-56826782	GM12878	blood:	n/a	chr19:56826244-56826253
18	ATF3	chr19:56826230-56826848	H1-hESC	embryonic stem cell:	n/a	chr19:56826244-56826253
19	ATF3	chr19:56825824-56826810	K562	blood:	n/a	chr19:56826006-56826019 chr19:56826009-56826019 chr19:56826005-56826018 chr19:56826006-56826016 chr19:56826008-56826016 chr19:56825997-56826017 chr19:56826009-56826020 chr19:56826009-56826017 chr19:56826009-56826016 chr19:56826008-56826028 chr19:56826244-56826253 chr19:56826006-56826017 chr19:56826009-56826019 chr19:56826006-56826019 chr19:56826005-56826020 chr19:56826007-56826020 chr19:56826008-56826019 chr19:56826007-56826018
20	ATF3	chr19:56820968-56821259	K562	blood:	n/a	n/a
21	BACH1	chr19:56821179-56821200	K562	blood:	n/a	n/a
22	BACH1	chr19:56826649-56827054	H1-hESC	embryonic stem cell:	n/a	n/a
23	BACH1	chr19:56825552-56826050	H1-hESC	embryonic stem cell:	n/a	n/a
24	BCL3	chr19:56850430-56850729	GM12878	blood:	n/a	n/a
25	BCL3	chr19:56825577-56826649	A549	lung:	n/a	chr19:56826245-56826254 chr19:56826232-56826241
26	BCL3	chr19:56851135-56851431	GM12878	blood:	n/a	n/a
27	BCLAF1	chr19:56825629-56826647	GM12878	blood:	n/a	chr19:56826245-56826254 chr19:56826232-56826241
28	BCLAF1	chr19:56820940-56821234	GM12878	blood:	n/a	n/a
29	BHLHE40	chr19:56820975-56821324	K562	blood:	n/a	n/a
30	BHLHE40	chr19:56825517-56827059	K562	blood:	n/a	n/a
31	BHLHE40	chr19:56825494-56827098	GM12878	blood:	n/a	n/a
32	BHLHE40	chr19:56832648-56832955	K562	blood:	n/a	n/a
33	BHLHE40	chr19:56833269-56834032	K562	blood:	n/a	n/a
34	BRCA1	chr19:56825308-56827124	Hela-S3	cervix:	n/a	n/a
35	BRCA1	chr19:56826628-56827040	HepG2	liver:	n/a	n/a
36	BRCA1	chr19:56825741-56826163	GM12878	blood:	n/a	n/a
37	BRCA1	chr19:56825942-56826211	HepG2	liver:	n/a	n/a
38	CBX3	chr19:56820962-56821337	K562	blood:	n/a	n/a
39	CBX3	chr19:56824486-56824901	K562	blood:	n/a	n/a
40	CBX3	chr19:56825345-56826474	K562	blood:	n/a	n/a
41	CBX3	chr19:56833171-56833700	K562	blood:	n/a	n/a
42	CCNT2	chr19:56825788-56826236	K562	blood:	n/a	chr19:56826158-56826167
43	CCNT2	chr19:56833811-56834125	K562	blood:	n/a	n/a
44	CCNT2	chr19:56832659-56832976	K562	blood:	n/a	n/a
45	CEBPB	chr19:56828186-56828395	HepG2	liver:	n/a	n/a
46	CEBPB	chr19:56826476-56826795	A549	lung:	n/a	n/a
47	CEBPB	chr19:56825244-56826970	IMR90	lung:	n/a	n/a
48	CEBPB	chr19:56825881-56826665	GM12878	blood:	n/a	n/a
49	CEBPB	chr19:56825261-56825686	HepG2	liver:	n/a	n/a
50	CEBPB	chr19:56828135-56828423	HepG2	liver:	n/a	n/a

(count:977 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:56847740-56847790	T-47D	breast:	n/a
2	chr19:56847740-56847790	T-47D	breast:	n/a
3	chr19:56851220-56851270	Caco-2	colon:	n/a
4	chr19:56854907-56854957	BE2_C	brain:	n/a
5	chr19:56850658-56850708	T-47D	breast:	n/a
6	chr19:56826826-56826876	HCPEpiC	choroid plexus:	n/a
7	chr19:56826761-56826811	GM12878	blood:	n/a
8	chr19:56826044-56826094	BJ	skin:	n/a
9	chr19:56851220-56851270	HUVEC	blood vessel:	n/a
10	chr19:56850658-56850708	U87	brain:	n/a
11	chr19:56828822-56828872	T-47D	breast:	n/a
12	chr19:56826761-56826811	GM19239	blood:	n/a
13	chr19:56849724-56849774	K562	blood:	n/a
14	chr19:56826826-56826876	ECC-1	luminal epithelium:	n/a
15	chr19:56825644-56825694	Caco-2	colon:	n/a
16	chr19:56826186-56826236	ECC-1	luminal epithelium:	n/a
17	chr19:56825644-56825694	HepG2	liver:	n/a
18	chr19:56852136-56852186	ProgFib	skin:	n/a
19	chr19:56826761-56826811	IMR90	lung:	fetal
20	chr19:56854907-56854957	HUVEC	blood vessel:	n/a
21	chr19:56828822-56828872	Caco-2	colon:	n/a
22	chr19:56850658-56850708	NHBE	bronchial:	n/a
23	chr19:56847740-56847790	SKMC	muscle:	n/a
24	chr19:56826186-56826236	HEK293	kidney:	embryo
25	chr19:56852136-56852186	MCF-7	breast:	n/a
26	chr19:56826442-56826492	T-47D	breast:	n/a
27	chr19:56854907-56854957	HEK293	kidney:	embryo
28	chr19:56821774-56821824	HEEpiC	esophagus:	n/a
29	chr19:56854907-56854957	SK-N-SH_RA	brain:	n/a
30	chr19:56826044-56826094	PrEC	prostate:	n/a
31	chr19:56847740-56847790	GM12878	blood:	n/a
32	chr19:56826044-56826094	HRPEpiC	eye:	n/a
33	chr19:56851220-56851270	MCF-7	breast:	n/a
34	chr19:56849724-56849774	BE2_C	brain:	n/a
35	chr19:56826826-56826876	BJ	skin:	n/a
36	chr19:56826779-56826829	RPTEC	kidney:	n/a
37	chr19:56826186-56826236	H1-hESC	embryonic stem cell:	embryo
38	chr19:56826761-56826811	A549	lung:	n/a
39	chr19:56826826-56826876	HEK293	kidney:	embryo
40	chr19:56826186-56826236	GM12892	blood:	n/a
41	chr19:56821774-56821824	PrEC	prostate:	n/a
42	chr19:56825644-56825694	K562	blood:	n/a
43	chr19:56847740-56847790	ovcar-3	ovarian:	n/a
44	chr19:56852136-56852186	GM19239	blood:	n/a
45	chr19:56826256-56826306	PFSK-1	brain:	n/a
46	chr19:56826761-56826811	HMEC	breast:	n/a
47	chr19:56852136-56852186	NH-A	brain:	n/a
48	chr19:56826044-56826094	MCF-7	breast:	n/a
49	chr19:56825644-56825694	HCPEpiC	choroid plexus:	n/a
50	chr19:56826826-56826876	NHBE	bronchial:	n/a

(count:67 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr19:56587513..56588027-chr19:56820710..56821536,2	MCF-7	breast:
2	chr12:47129160..47129680-chr19:56844644..56845146,2	MCF-7	breast:
3	chr19:56165049..56166864-chr19:56826052..56827910,2	K562	blood:
4	chr19:56777096..56779331-chr19:56819751..56822246,2	MCF-7	breast:
5	chr19:56820844..56821652-chr19:56844543..56845280,2	MCF-7	breast:
6	chr19:56582179..56582684-chr19:56844641..56845485,2	MCF-7	breast:
7	chr19:56807078..56808007-chr19:56820602..56821134,2	MCF-7	breast:
8	chr11:118560524..118561488-chr19:56820849..56821521,2	MCF-7	breast:
9	chr19:56764440..56765781-chr19:56844595..56845562,7	MCF-7	breast:
10	chr19:56629872..56632038-chr19:56819906..56821500,2	MCF-7	breast:
11	chr19:56815074..56816909-chr19:56819293..56822091,2	K562	blood:
12	chr12:41379403..41382000-chr19:56843629..56845735,2	MCF-7	breast:
13	chr19:56760039..56762057-chr19:56831322..56833020,2	K562	blood:
14	chr19:56650916..56653050-chr19:56823772..56825517,2	K562	blood:
15	chr19:56824639..56829612-chr19:56829732..56835885,11	K562	blood:
16	chr19:56654193..56655732-chr19:56826080..56828082,2	MCF-7	breast:
17	chr19:56631659..56633594-chr19:56825559..56827609,3	MCF-7	breast:
18	chr19:56666632..56667429-chr19:56845072..56845613,2	MCF-7	breast:
19	chr19:56587489..56588678-chr19:56844564..56845591,7	K562	blood:
20	chr19:56764814..56765752-chr19:56820274..56821276,4	K562	blood:
21	chr19:56152176..56154153-chr19:56826714..56828246,2	MCF-7	breast:
22	chr19:56651555..56653145-chr19:56824729..56827557,2	MCF-7	breast:
23	chr19:56811881..56813231-chr19:56820624..56821581,3	K562	blood:
24	chr19:56577530..56578455-chr19:56820635..56821533,4	MCF-7	breast:
25	chr19:56825234..56827754-chr19:56833575..56835953,2	MCF-7	breast:
26	chr19:56819466..56823348-chr19:56824038..56827318,8	MCF-7	breast:
27	chr19:56772426..56773119-chr19:56820978..56821526,2	MCF-7	breast:
28	chr19:56612599..56616950-chr19:56825214..56827593,3	MCF-7	breast:
29	chr19:56820844..56821652-chr19:56844543..56845280,2	MCF-7	breast:
30	chr19:56824639..56829612-chr19:56829732..56835885,11	K562	blood:
31	chr19:56593381..56594153-chr19:56822143..56822736,2	K562	blood:
32	chr19:56824960..56826803-chr19:56913604..56915630,2	K562	blood:
33	chr19:56825352..56829856-chr19:56831358..56835885,6	K562	blood:
34	chr19:56731454..56732253-chr19:56820726..56821606,2	MCF-7	breast:
35	chr19:56825650..56827475-chr19:56859296..56861906,3	K562	blood:
36	chr19:56825234..56827754-chr19:56833575..56835953,2	MCF-7	breast:
37	chr19:56577783..56578497-chr19:56844505..56845088,2	K562	blood:
38	chr19:56828025..56830273-chr19:56844199..56846430,2	K562	blood:
39	chr19:56837164..56839589-chr19:56849989..56852977,2	K562	blood:
40	chr19:56821792..56823459-chr19:56860076..56862047,2	K562	blood:
41	chr19:56764396..56765751-chr19:56820601..56821654,11	MCF-7	breast:
42	chr19:56820673..56821653-chr19:56844611..56845545,7	MCF-7	breast:
43	chr19:56825335..56828118-chr19:56903219..56905060,3	K562	blood:
44	chr10:99496757..99497468-chr19:56825581..56826247,2	Hela-S3	cervix:
45	chr19:56820673..56821653-chr19:56844611..56845545,7	MCF-7	breast:
46	chr19:56631390..56634909-chr19:56825062..56827444,3	MCF-7	breast:
47	chr19:56766124..56767037-chr19:56820605..56821442,2	MCF-7	breast:
48	chr19:56813348..56817518-chr19:56818842..56822529,5	K562	blood:
49	chr19:56826282..56828501-chr19:56879622..56881209,2	K562	blood:
50	chr19:56764916..56765950-chr19:56820818..56821640,4	MCF-7	breast:

(count:24 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZSCAN5C-1	chr19:56821493-56821930	NONHSAT068093
2	lnc-ZNF583-5	chr19:56849674-56849874	ENSG00000267549.1
3	lnc-ZNF582-5	chr19:56824652-56824749	NONHSAT068092
4	lnc-ZNF583-5	chr19:56852155-56852656	ENSG00000267549.1
5	lnc-ZNF583-5	chr19:56827190-56827397	NONHSAT068100
6	lnc-ZNF582-5	chr19:56826050-56826208	NONHSAT068096
7	lnc-ZNF583-5	chr19:56826623-56828172	ENSG00000267549.1
8	lnc-ZNF582-5	chr19:56826050-56826228	NONHSAT068089
9	lnc-ZNF582-5	chr19:56824652-56824753	NONHSAT068089
10	lnc-ZNF583-5	chr19:56852155-56852609	NONHSAT068099
11	lnc-ZNF583-5	chr19:56826968-56827011	ENSG00000267549.1
12	lnc-ZNF583-5	chr19:56825619-56826355	NONHSAT068099
13	lnc-ZNF582-5	chr19:56824652-56824753	NONHSAT068090
14	lnc-ZNF582-5	chr19:56826050-56826162	NONHSAT068091
15	lnc-ZNF583-5	chr19:56849674-56849874	NONHSAT068099
16	lnc-ZNF583-5	chr19:56852155-56852374	ENSG00000267549.1
17	lnc-ZNF583-5	chr19:56826495-56826874	NONHSAT068100
18	lnc-ZNF582-5	chr19:56824652-56824753	NONHSAT068091
19	lnc-ZNF582-5	chr19:56825989-56826202	NONHSAT068090
20	lnc-ZNF582-4	chr19:56823297-56823855	ENSG00000267298.1
21	lnc-ZNF583-5	chr19:56826072-56826355	ENSG00000267549.1
22	lnc-ZNF582-5	chr19:56824652-56824756	NONHSAT068087
23	lnc-ZNF582-5	chr19:56824652-56824753	NONHSAT068096
24	lnc-ZNF583-5	chr19:56849674-56849874	ENSG00000267549.1

No data

Variant related genes	Relation type
ENSG00000267549	TF binding region
ENSG00000266907	TF binding region
ENSG00000200646	TF binding region
ENSG00000267145	TF binding region
VN2R17P	TF binding region
ENSG00000267298	TF binding region
ZSCAN5A	TF binding region
ENSG00000266932	TF binding region
ENSG00000267549	CpG island
ENSG00000266907	CpG island
ENSG00000200646	CpG island
ENSG00000267145	CpG island
VN2R17P	CpG island
ENSG00000267298	CpG island
ZSCAN5A	CpG island
ENSG00000266932	CpG island
ENSG00000267454	chromatin interactions
ENSG00000223060	chromatin interactions
ENSG00000063244	chromatin interactions
ENSG00000173581	chromatin interactions
ENSG00000240225	chromatin interactions
ENSG00000111843	chromatin interactions
ENSG00000267145	chromatin interactions
ENSG00000105372	chromatin interactions
ENSG00000200646	chromatin interactions
ENSG00000171425	chromatin interactions
ENSG00000167685	chromatin interactions
ENSG00000267522	chromatin interactions
ENSG00000018869	chromatin interactions
ENSG00000131848	chromatin interactions
ENSG00000142156	chromatin interactions
ENSG00000213015	chromatin interactions
ENSG00000267549	chromatin interactions
ENSG00000255239	chromatin interactions
ENSG00000267710	chromatin interactions
ENSG00000155256	chromatin interactions
ENSG00000198440	chromatin interactions
ENSG00000142409	chromatin interactions
ENSG00000267298	chromatin interactions
ENSG00000213014	chromatin interactions
ENSG00000266907	chromatin interactions
ENSG00000267429	chromatin interactions

Extended variants
information (count: 1175 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:1175 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs118037419	chr19:56820590-56820591	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
2	rs561112471	chr19:56820594-56820595	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
3	rs186768436	chr19:56820612-56820613	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
4	rs190344800	chr19:56820618-56820619	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
5	rs560220852	chr19:56820650-56820651	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
6	rs34833657	chr19:56820669-56820670	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs36058339	chr19:56820693-56820694	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
8	rs80345236	chr19:56820711-56820712	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
9	rs146073012	chr19:56820728-56820729	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
10	rs34181036	chr19:56820749-56820750	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs550913031	chr19:56820780-56820781	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
12	rs35920556	chr19:56820852-56820853	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	7 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs529918733	chr19:56820903-56820904	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
14	rs546678977	chr19:56820935-56820936	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
15	rs566603047	chr19:56820960-56820961	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
16	rs35366276	chr19:56821013-56821014	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	7 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs558557045	chr19:56821053-56821054	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
18	rs374256519	chr19:56821091-56821092	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
19	rs568775542	chr19:56821101-56821102	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
20	rs117797618	chr19:56821144-56821145	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
21	rs545677602	chr19:56821147-56821148	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
22	rs372579196	chr19:56821151-56821152	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
23	rs534794875	chr19:56821162-56821163	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
24	rs113832320	chr19:56821165-56821166	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
25	rs565450757	chr19:56821175-56821176	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
26	rs577297187	chr19:56821176-56821177	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
27	rs545864034	chr19:56821185-56821186	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
28	rs554315034	chr19:56821253-56821254	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
29	rs531633920	chr19:56821278-56821279	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
30	rs544471177	chr19:56821291-56821292	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
31	rs139388171	chr19:56821296-56821297	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
32	rs144174492	chr19:56821302-56821303	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
33	rs375135647	chr19:56821350-56821351	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
34	rs2304122	chr19:56821435-56821436	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs566427825	chr19:56821452-56821453	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
36	rs532197847	chr19:56821479-56821480	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
37	rs182564631	chr19:56821554-56821555	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
38	rs34595138	chr19:56821596-56821597	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
39	rs372153498	chr19:56821641-56821642	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
40	rs115539552	chr19:56821668-56821669	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
41	rs11668451	chr19:56821673-56821674	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs537454574	chr19:56821689-56821690	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
43	rs188429632	chr19:56821711-56821712	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
44	rs115299264	chr19:56821718-56821719	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
45	rs534107293	chr19:56821723-56821724	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
46	rs553982178	chr19:56821728-56821729	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
47	rs577385825	chr19:56821745-56821746	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
48	rs548710291	chr19:56821827-56821828	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
49	rs146483738	chr19:56821831-56821832	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a
50	rs565535467	chr19:56821840-56821841	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Breast cancer	21785460	CNVD
Myelofibrosis	22110671	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Alzheimer''s disease	22166940	CNVD
Heart disease	21282601	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Glioblastoma multiforme	21922591	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Breast cancer	20409316	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Non-syndromic sensorineural hearing loss	19812545	CNVD
Autism	21865298	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:868 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:56772800-56824200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr19:56782800-56825200	Weak transcription	Psoas Muscle	Psoas
3	chr19:56783000-56825000	Weak transcription	Stomach Mucosa	stomach
4	chr19:56785400-56823600	Weak transcription	Osteobl	bone
5	chr19:56788200-56824400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr19:56789000-56823800	Weak transcription	Brain Angular Gyrus	brain
7	chr19:56799800-56825200	Weak transcription	Right Atrium	heart
8	chr19:56802400-56821800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr19:56803000-56824200	Weak transcription	Fetal Thymus	thymus
10	chr19:56803200-56825000	Weak transcription	Colon Smooth Muscle	Colon
11	chr19:56804400-56825000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr19:56804600-56825000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr19:56805200-56825400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr19:56806000-56825000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr19:56806400-56825200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr19:56806400-56825200	Weak transcription	Brain Hippocampus Middle	brain
17	chr19:56806400-56825200	Weak transcription	NH-A	brain
18	chr19:56806600-56825000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr19:56807000-56825200	Weak transcription	NHLF	lung
20	chr19:56807600-56823800	Weak transcription	GM12878-XiMat	blood
21	chr19:56807800-56825000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr19:56807800-56825200	Weak transcription	Brain Germinal Matrix	brain
23	chr19:56807800-56825200	Weak transcription	Colonic Mucosa	Colon
24	chr19:56807800-56825200	Weak transcription	Esophagus	oesophagus
25	chr19:56808200-56821400	Weak transcription	Fetal Intestine Large	intestine
26	chr19:56808200-56825000	Weak transcription	HMEC	breast
27	chr19:56810000-56825200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr19:56813200-56822000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr19:56813600-56821600	Weak transcription	Aorta	Aorta
30	chr19:56813600-56822200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr19:56813600-56825000	Weak transcription	Fetal Heart	heart
32	chr19:56813600-56825200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr19:56813600-56825200	Weak transcription	Left Ventricle	heart
34	chr19:56813800-56825000	Weak transcription	HUVEC	blood vessel
35	chr19:56814000-56825200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr19:56814200-56820600	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr19:56814200-56825000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr19:56814200-56825200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr19:56814400-56824800	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr19:56814400-56825000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr19:56814400-56825200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr19:56814400-56825200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr19:56814400-56825400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr19:56814600-56823600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr19:56814600-56825000	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr19:56815400-56822600	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr19:56815400-56825000	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr19:56815600-56821600	Weak transcription	NHEK	skin
49	chr19:56815600-56825000	Weak transcription	HSMMtube	muscle
50	chr19:56815600-56825200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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