Variant report

Variant	nsv1067441
Chromosome Location	chr20:25397566-25615439
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3678)
CpG islands
(count:2442)
Chromatin interactive
region (count:152)
LncRNA
region (count:17)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:3678 , 50 per page) page: 1 2 3 4 5 6 7 ... 74

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr20:25506350-25507074	HepG2	liver:	n/a	n/a
2	ARID3A	chr20:25589872-25589910	K562	blood:	n/a	n/a
3	ARID3A	chr20:25565236-25565725	HepG2	liver:	n/a	n/a
4	ARID3A	chr20:25530308-25530796	HepG2	liver:	n/a	n/a
5	ARID3A	chr20:25555145-25555336	HepG2	liver:	n/a	n/a
6	ARID3A	chr20:25557897-25557902	HepG2	liver:	n/a	n/a
7	ARID3A	chr20:25519655-25520011	HepG2	liver:	n/a	n/a
8	ARID3A	chr20:25604243-25605494	HepG2	liver:	n/a	n/a
9	ARID3A	chr20:25566452-25566585	HepG2	liver:	n/a	n/a
10	ARID3A	chr20:25565954-25566222	HepG2	liver:	n/a	n/a
11	ARID3A	chr20:25488240-25489133	HepG2	liver:	n/a	n/a
12	ARID3A	chr20:25559627-25559973	HepG2	liver:	n/a	n/a
13	ARID3A	chr20:25583644-25583908	HepG2	liver:	n/a	n/a
14	ATF1	chr20:25524173-25524617	K562	blood:	n/a	n/a
15	ATF1	chr20:25604506-25604949	K562	blood:	n/a	n/a
16	ATF1	chr20:25587145-25587281	K562	blood:	n/a	n/a
17	ATF1	chr20:25520966-25521214	K562	blood:	n/a	n/a
18	ATF1	chr20:25450740-25450940	K562	blood:	n/a	n/a
19	ATF2	chr20:25520859-25521226	H1-hESC	embryonic stem cell:	n/a	n/a
20	ATF2	chr20:25614892-25615389	GM12878	blood:	n/a	n/a
21	ATF2	chr20:25614922-25615298	GM12878	blood:	n/a	n/a
22	ATF2	chr20:25604086-25605395	GM12878	blood:	n/a	n/a
23	ATF2	chr20:25604546-25604979	H1-hESC	embryonic stem cell:	n/a	n/a
24	ATF3	chr20:25488628-25489026	A549	lung:	n/a	n/a
25	ATF3	chr20:25523783-25524037	K562	blood:	n/a	n/a
26	ATF3	chr20:25604171-25604989	HepG2	liver:	n/a	chr20:25604441-25604450
27	ATF3	chr20:25604521-25604862	K562	blood:	n/a	n/a
28	ATF3	chr20:25604408-25605384	A549	lung:	n/a	chr20:25604441-25604450
29	BACH1	chr20:25603685-25604906	H1-hESC	embryonic stem cell:	n/a	n/a
30	BACH1	chr20:25520911-25521321	H1-hESC	embryonic stem cell:	n/a	n/a
31	BACH1	chr20:25603875-25604378	K562	blood:	n/a	n/a
32	BACH1	chr20:25605186-25605431	H1-hESC	embryonic stem cell:	n/a	n/a
33	BACH1	chr20:25565874-25566218	H1-hESC	embryonic stem cell:	n/a	n/a
34	BACH1	chr20:25470160-25470452	H1-hESC	embryonic stem cell:	n/a	n/a
35	BATF	chr20:25499248-25499445	GM12878	blood:	n/a	n/a
36	BATF	chr20:25583645-25583879	GM12878	blood:	n/a	n/a
37	BATF	chr20:25614868-25615500	GM12878	blood:	n/a	n/a
38	BATF	chr20:25604653-25605071	GM12878	blood:	n/a	n/a
39	BATF	chr20:25614906-25615298	GM12878	blood:	n/a	n/a
40	BATF	chr20:25399506-25399665	GM12878	blood:	n/a	chr20:25399587-25399598
41	BCL11A	chr20:25615002-25615290	GM12878	blood:	n/a	chr20:25615065-25615074
42	BCL3	chr20:25565131-25566237	A549	lung:	n/a	chr20:25565815-25565824 chr20:25565704-25565717 chr20:25565700-25565713 chr20:25565668-25565681 chr20:25565884-25565893 chr20:25565855-25565868 chr20:25565861-25565869
43	BCL3	chr20:25603598-25605530	A549	lung:	n/a	chr20:25604587-25604600 chr20:25604588-25604601 chr20:25604350-25604363 chr20:25603858-25603867
44	BCL3	chr20:25604336-25605427	A549	lung:	n/a	chr20:25604587-25604600 chr20:25604588-25604601 chr20:25604350-25604363
45	BCL3	chr20:25590100-25590330	GM12878	blood:	n/a	n/a
46	BCL3	chr20:25590098-25590301	GM12878	blood:	n/a	n/a
47	BCLAF1	chr20:25603785-25605150	GM12878	blood:	n/a	chr20:25604587-25604600 chr20:25604588-25604601 chr20:25604350-25604363 chr20:25603858-25603867
48	BCLAF1	chr20:25604291-25605317	GM12878	blood:	n/a	chr20:25604587-25604600 chr20:25604588-25604601 chr20:25604350-25604363
49	BHLHE40	chr20:25399551-25399751	GM12878	blood:	n/a	n/a
50	BHLHE40	chr20:25603689-25605427	HepG2	liver:	n/a	chr20:25604616-25604632

(count:2442 , 50 per page) page: 1 2 3 4 5 6 7 ... 49

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr20:25566470-25566520	CMK	blood:	n/a
2	chr20:25595830-25595880	GM06990	blood:	n/a
3	chr20:25566470-25566520	CMK	blood:	n/a
4	chr20:25595830-25595880	GM06990	blood:	n/a
5	chr20:25566178-25566228	ovcar-3	ovarian:	n/a
6	chr20:25479848-25479898	BE2_C	brain:	n/a
7	chr20:25604757-25604807	PFSK-1	brain:	n/a
8	chr20:25583324-25583374	U87	brain:	n/a
9	chr20:25604737-25604787	HepG2	liver:	n/a
10	chr20:25604805-25604855	HPAEpiC	pulmonary alveolar:	n/a
11	chr20:25604757-25604807	AG09309	skin:	n/a
12	chr20:25565460-25565510	RPTEC	kidney:	n/a
13	chr20:25433878-25433928	PrEC	prostate:	n/a
14	chr20:25604715-25604765	ovcar-3	ovarian:	n/a
15	chr20:25583082-25583132	GM12892	blood:	n/a
16	chr20:25583652-25583702	U87	brain:	n/a
17	chr20:25566336-25566386	HepG2	liver:	n/a
18	chr20:25450839-25450889	T-47D	breast:	n/a
19	chr20:25580630-25580680	NHBE	bronchial:	n/a
20	chr20:25605041-25605091	AG04450	lung:	fetal
21	chr20:25603976-25604026	ovcar-3	ovarian:	n/a
22	chr20:25583652-25583702	Jurkat	blood:	n/a
23	chr20:25583652-25583702	NT2-D1	testis:	n/a
24	chr20:25566563-25566613	HPAEpiC	pulmonary alveolar:	n/a
25	chr20:25450839-25450889	RPTEC	kidney:	n/a
26	chr20:25448861-25448911	NHBE	bronchial:	n/a
27	chr20:25566470-25566520	MCF-7	breast:	n/a
28	chr20:25566382-25566432	T-47D	breast:	n/a
29	chr20:25604462-25604512	HAEpiC	amniotic membrane:	n/a
30	chr20:25603976-25604026	PrEC	prostate:	n/a
31	chr20:25565879-25565929	GM12878	blood:	n/a
32	chr20:25605889-25605939	Hela-S3	cervix:	n/a
33	chr20:25604805-25604855	HAEpiC	amniotic membrane:	n/a
34	chr20:25605889-25605939	LNCaP	prostate:	n/a
35	chr20:25604715-25604765	ProgFib	skin:	n/a
36	chr20:25563834-25563884	AG04450	lung:	fetal
37	chr20:25583082-25583132	SAEC	small airway:	n/a
38	chr20:25604759-25604809	NH-A	brain:	n/a
39	chr20:25566563-25566613	NH-A	brain:	n/a
40	chr20:25602213-25602263	Jurkat	blood:	n/a
41	chr20:25566513-25566563	HCT-116	colon:	n/a
42	chr20:25604737-25604787	SK-N-MC	brain:	n/a
43	chr20:25448861-25448911	H1-hESC	embryonic stem cell:	embryo
44	chr20:25566563-25566613	ECC-1	luminal epithelium:	n/a
45	chr20:25604643-25604693	ovcar-3	ovarian:	n/a
46	chr20:25604462-25604512	NH-A	brain:	n/a
47	chr20:25604757-25604807	BJ	skin:	n/a
48	chr20:25570529-25570579	BJ	skin:	n/a
49	chr20:25565667-25565717	PrEC	prostate:	n/a
50	chr20:25479848-25479898	AG09319	gingival:	n/a

(count:152 , 50 per page) page: 1 2 3 4

No.	Distal block	Cell Line	Cell type
1	chr20:25564944..25567747-chr20:25571041..25572866,2	MCF-7	breast:
2	chr20:25593129..25595979-chr20:25604532..25607057,2	MCF-7	breast:
3	chr20:25498962..25501422-chr20:25501455..25503650,2	MCF-7	breast:
4	chr20:25579638..25582269-chr20:25599435..25601779,2	K562	blood:
5	chr20:25564265..25567754-chr20:25602950..25606854,10	MCF-7	breast:
6	chr20:25491958..25494931-chr20:25496004..25498993,2	MCF-7	breast:
7	chr20:25474956..25477524-chr20:25604184..25606432,2	MCF-7	breast:
8	chr20:25518724..25523016-chr20:25601749..25604904,3	MCF-7	breast:
9	chr20:25524378..25525990-chr20:25604731..25606396,2	MCF-7	breast:
10	chr20:25475529..25477645-chr20:25603569..25606189,3	MCF-7	breast:
11	chr20:25565669..25567691-chr20:25589575..25591677,2	MCF-7	breast:
12	chr10:22614751..22615680-chr20:25604638..25605211,2	Hela-S3	cervix:
13	chr20:25589271..25591160-chr20:25602645..25604605,2	K562	blood:
14	chr20:25571499..25573188-chr20:25604906..25607655,2	K562	blood:
15	chr20:25474550..25476302-chr20:25479455..25481151,2	K562	blood:
16	chr20:25600186..25602074-chr20:25626007..25628031,2	K562	blood:
17	chr20:25578107..25581222-chr20:25601982..25605095,3	MCF-7	breast:
18	chr20:25603625..25606406-chr20:25665177..25670447,5	MCF-7	breast:
19	chr20:25602422..25607796-chr20:25675112..25679388,9	K562	blood:
20	chr20:25594825..25598206-chr20:25602674..25604770,4	MCF-7	breast:
21	chr20:25476655..25479810-chr20:25563858..25567519,3	MCF-7	breast:
22	chr20:25477368..25480160-chr20:25601327..25602840,2	MCF-7	breast:
23	chr20:25476655..25479810-chr20:25563858..25567519,3	MCF-7	breast:
24	chr20:25431598..25433481-chr20:25439717..25442541,2	MCF-7	breast:
25	chr20:25560873..25562976-chr20:25579297..25581436,2	MCF-7	breast:
26	chr20:25487824..25490513-chr20:25503941..25506270,3	MCF-7	breast:
27	chr14:31676908..31677885-chr20:25604560..25605123,2	Hela-S3	cervix:
28	chr20:25504894..25507358-chr20:25508312..25510600,2	MCF-7	breast:
29	chr20:25521309..25522938-chr20:25526944..25528978,2	MCF-7	breast:
30	chr20:25604068..25607059-chr20:25675582..25678596,4	MCF-7	breast:
31	chr20:25590781..25592605-chr20:25602144..25606440,3	MCF-7	breast:
32	chr20:25273820..25275552-chr20:25407200..25409099,2	K562	blood:
33	chr20:25477682..25478236-chr20:25488620..25489236,2	MCF-7	breast:
34	chr20:25393485..25396024-chr20:25399784..25401777,2	K562	blood:
35	chr20:25277010..25279912-chr20:25462998..25464763,2	K562	blood:
36	chr20:25476823..25479458-chr20:25499157..25501846,2	MCF-7	breast:
37	chr20:25585705..25588241-chr20:25603917..25606437,2	K562	blood:
38	chr20:25491299..25493041-chr20:25501976..25504817,2	K562	blood:
39	chr20:25387859..25390842-chr20:25397411..25399483,2	MCF-7	breast:
40	chr20:25462596..25464466-chr20:25477326..25479004,2	MCF-7	breast:
41	chr20:25604700..25606724-chr20:25650561..25652560,2	MCF-7	breast:
42	chr20:25491299..25493041-chr20:25501976..25504817,2	K562	blood:
43	chr20:25450369..25451319-chr20:25554838..25555706,2	K562	blood:
44	chr20:25464881..25466399-chr20:25468189..25469773,2	MCF-7	breast:
45	chr20:25431598..25433481-chr20:25439717..25442541,2	MCF-7	breast:
46	chr20:25573368..25577137-chr20:25602924..25606486,3	MCF-7	breast:
47	chr20:25228557..25231308-chr20:25476839..25479017,2	MCF-7	breast:
48	chr20:25519449..25520233-chr20:25534260..25534819,2	MCF-7	breast:
49	chr20:25388341..25390169-chr20:25397510..25399863,2	MCF-7	breast:
50	chr20:25521002..25521665-chr20:25650642..25651281,2	MCF-7	breast:

(count:17 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GINS1-1	chr20:25615365-25615463	ENSG00000213742.2
2	lnc-GINS1-4	chr20:25513663-25514148	NONHSAT079162
3	lnc-GINS1-1	chr20:25614685-25614806	ENSG00000213742.2
4	lnc-GINS1-1	chr20:25612794-25612924	ENSG00000213742.2
5	lnc-GINS1-1	chr20:25612846-25612924	ENSG00000213742.2
6	lnc-GINS1-1	chr20:25604681-25604771	ENSG00000213742.2
7	lnc-GINS1-1	chr20:25604695-25604771	ENSG00000213742.2
8	lnc-GINS1-1	chr20:25604869-25605062	ENSG00000213742.2
9	lnc-GINS1-1	chr20:25614685-25614806	ENSG00000213742.2
10	lnc-GINS1-1	chr20:25612794-25612924	ENSG00000213742.2
11	lnc-GINS1-1	chr20:25614685-25614806	ENSG00000213742.2
12	lnc-GINS1-1	chr20:25614685-25614806	ENSG00000213742.2
13	lnc-GINS1-1	chr20:25604695-25604771	ENSG00000213742.2
14	lnc-GINS1-1	chr20:25615365-25615463	ENSG00000213742.2
15	lnc-GINS1-1	chr20:25612794-25612924	ENSG00000213742.2
16	lnc-GINS1-1	chr20:25604793-25605082	ENSG00000213742.2
17	lnc-GINS1-1	chr20:25615365-25615463	ENSG00000213742.2

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	GINS1	hsa-miR-7-5p	chr20:25428910-25428929

Variant related genes	Relation type
ZNF337-AS1	TF binding region
RNU6ATAC17P	TF binding region
NINL	TF binding region
GINS1	TF binding region
NANP	TF binding region
ZNF337-AS1	CpG island
RNU6ATAC17P	CpG island
NINL	CpG island
GINS1	CpG island
NANP	CpG island
ENSG00000213742	chromatin interactions
ENSG00000242236	chromatin interactions
ENSG00000261796	chromatin interactions
ENSG00000101003	chromatin interactions
ENSG00000130684	chromatin interactions
ENSG00000101474	chromatin interactions
ENSG00000092148	chromatin interactions
ENSG00000168283	chromatin interactions
ENSG00000051108	chromatin interactions
ENSG00000124596	chromatin interactions
ENSG00000166946	chromatin interactions
ENSG00000236542	chromatin interactions
ENSG00000126778	chromatin interactions
ENSG00000001167	chromatin interactions
ENSG00000251883	chromatin interactions
ENSG00000100997	chromatin interactions
ENSG00000170191	chromatin interactions
ENSG00000101004	chromatin interactions
ENSG00000240682	chromatin interactions
ENSG00000100994	chromatin interactions

Extended variants
information (count: 8908 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:8908 , 50 per page) page: 1 2 3 4 5 6 7 ... 179

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs376662555	chr20:25397698-25397699	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs370424052	chr20:25397708-25397709	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs376545897	chr20:25397731-25397732	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs554501561	chr20:25397742-25397743	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs202022284	chr20:25397757-25397758	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs200137375	chr20:25397759-25397760	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs368823946	chr20:25397763-25397764	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs554759579	chr20:25397777-25397778	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs186289957	chr20:25397793-25397794	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs201272727	chr20:25397817-25397818	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs372527591	chr20:25397819-25397820	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs560604409	chr20:25397832-25397833	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs376403619	chr20:25397853-25397854	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs576555325	chr20:25397869-25397870	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs545552825	chr20:25397890-25397891	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs565351254	chr20:25397905-25397906	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs376729032	chr20:25397948-25397949	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs531198201	chr20:25397980-25397981	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs111454740	chr20:25397995-25397996	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs563157134	chr20:25398058-25398059	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs190715062	chr20:25398097-25398098	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs561675151	chr20:25398136-25398137	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs530110224	chr20:25398162-25398163	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs547052920	chr20:25398184-25398185	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs143247034	chr20:25398229-25398230	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs147503763	chr20:25398230-25398231	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs140238153	chr20:25398239-25398240	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs6083849	chr20:25398397-25398398	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs568960525	chr20:25398411-25398412	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs73333513	chr20:25398430-25398431	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
31	rs150058627	chr20:25398431-25398432	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs554557356	chr20:25398437-25398438	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs574424684	chr20:25398501-25398502	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs181487560	chr20:25398504-25398505	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs530320778	chr20:25398514-25398515	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs145384766	chr20:25398533-25398534	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs112533390	chr20:25398569-25398570	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs185824183	chr20:25398597-25398598	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs111564930	chr20:25398609-25398610	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs75414452	chr20:25398656-25398657	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs544833663	chr20:25398687-25398688	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs370787893	chr20:25398691-25398692	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs374085332	chr20:25398700-25398701	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs191083445	chr20:25398701-25398702	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs200250047	chr20:25398712-25398713	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs201876137	chr20:25398728-25398729	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs371462533	chr20:25398739-25398740	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs137901350	chr20:25398748-25398749	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs201539344	chr20:25398753-25398754	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs569373463	chr20:25398765-25398766	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	16272173	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Renal cell carcinoma	18765545	CNVD
Alagille syndrome	17576883	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Breast cancer	16608533	CNVD
Bladder cancer	21909424	CNVD
Esophageal cancer	21851588	CNVD
Breast cancer	17133270	CNVD
Thrombophilia	17576883	CNVD
Myelofibrosis	22110671	CNVD
Mental retardation	21062444	CNVD
Hepatocellular carcinoma	22174799	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Oral cancer	21386901	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Pancreatic cancer	17952125	CNVD
Colorectal cancer	16774939	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:5743 , 50 per page) page: 1 2 3 4 5 6 7 ... 115

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25388800-25418000	Weak transcription	Gastric	stomach
2	chr20:25389000-25400200	Weak transcription	Stomach Mucosa	stomach
3	chr20:25389000-25433600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr20:25389200-25411000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr20:25389200-25415000	Weak transcription	Primary B cells from cord blood	blood
6	chr20:25389400-25399400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr20:25389400-25399400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr20:25389400-25402400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr20:25389400-25407000	Weak transcription	Fetal Intestine Large	intestine
10	chr20:25389400-25407800	Weak transcription	Fetal Brain Female	brain
11	chr20:25389400-25422800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr20:25389600-25398000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr20:25389600-25400800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr20:25389600-25426400	Weak transcription	NH-A	brain
15	chr20:25389600-25426600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr20:25389600-25432200	Weak transcription	Fetal Brain Male	brain
17	chr20:25389800-25398200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr20:25389800-25398200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr20:25389800-25398400	Weak transcription	Thymus	Thymus
20	chr20:25389800-25399200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr20:25389800-25399200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr20:25389800-25399400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr20:25389800-25401200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr20:25389800-25406800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr20:25389800-25411400	Weak transcription	Fetal Kidney	kidney
26	chr20:25389800-25417000	Weak transcription	Fetal Heart	heart
27	chr20:25389800-25417600	Weak transcription	HSMM	muscle
28	chr20:25389800-25432600	Weak transcription	Esophagus	oesophagus
29	chr20:25390000-25398400	Weak transcription	Osteobl	bone
30	chr20:25390000-25398600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr20:25390000-25398600	Weak transcription	Fetal Lung	lung
32	chr20:25390000-25399200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr20:25390000-25399400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr20:25390000-25434800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr20:25390200-25398400	Weak transcription	NHLF	lung
36	chr20:25390200-25406600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr20:25390200-25416200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr20:25390400-25397800	Weak transcription	NHDF-Ad	bronchial
39	chr20:25390400-25417400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr20:25390600-25398200	Weak transcription	Fetal Intestine Small	intestine
41	chr20:25390600-25426200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr20:25390600-25433400	Weak transcription	Brain Germinal Matrix	brain
43	chr20:25391000-25418400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr20:25391600-25416000	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr20:25391600-25416200	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr20:25392000-25398400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr20:25392200-25397800	Weak transcription	Fetal Stomach	stomach
48	chr20:25392200-25398400	Weak transcription	Fetal Thymus	thymus
49	chr20:25392200-25430800	Strong transcription	Dnd41	blood
50	chr20:25392400-25398600	Weak transcription	K562	blood

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