Variant report

Variant	nsv1067903
Chromosome Location	chr10:28270060-28275320
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CREB1	chr10:28270644-28271089	H1-hESC	embryonic stem cell:	n/a	n/a
2	FOS	chr10:28272612-28272726	MCF10A-Er-Src	breast:	n/a	n/a
3	JUN	chr10:28270717-28270963	HepG2	liver:	n/a	chr10:28270844-28270857 chr10:28270863-28270876 chr10:28270867-28270876
4	JUND	chr10:28270686-28271021	HepG2	liver:	n/a	chr10:28270867-28270876
5	POLR2A	chr10:28271880-28272049	Gliobla	brain:	n/a	n/a
6	STAT3	chr10:28273313-28273559	MCF10A-Er-Src	breast:	n/a	chr10:28273538-28273546

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RAB18-6	chr10:28272081-28272210	NONHSAT011919

Variant related genes	Relation type
ARMC4	TF binding region

Extended variants
information (count: 182 )
Associated
traits (count: 45 )

Variant overlapped rSNPs/rCNVs (count:182 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs538471861	chr10:28270155-28270156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs553914586	chr10:28270160-28270161	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs114819736	chr10:28270173-28270174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs542877228	chr10:28270192-28270193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs73606025	chr10:28270218-28270219	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs576465882	chr10:28270241-28270242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs199591693	chr10:28270268-28270269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs543831402	chr10:28270269-28270270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs77228272	chr10:28270277-28270278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs149168196	chr10:28270393-28270394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs532630544	chr10:28270424-28270425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs143215183	chr10:28270448-28270449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs148299600	chr10:28270468-28270469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs138192807	chr10:28270476-28270477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs191594899	chr10:28270487-28270488	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs371913802	chr10:28270503-28270504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs9334541	chr10:28270612-28270613	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs183665355	chr10:28270613-28270614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs187324661	chr10:28270697-28270698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs58107550	chr10:28270768-28270769	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs554496276	chr10:28270771-28270772	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs77744242	chr10:28270819-28270820	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs530818534	chr10:28270855-28270856	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs114695749	chr10:28270875-28270876	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs34942945	chr10:28270882-28270883	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs567122414	chr10:28270904-28270905	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs12779067	chr10:28270909-28270910	Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs190190907	chr10:28270938-28270939	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs367929029	chr10:28270939-28270940	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs553703952	chr10:28270946-28270947	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs572157723	chr10:28270953-28270954	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs142773722	chr10:28270993-28270994	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs557365654	chr10:28270998-28270999	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs554946884	chr10:28271072-28271073	Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs33935473	chr10:28271092-28271093	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs55811996	chr10:28271093-28271094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs386371025	chr10:28271102-28271103	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs397746063	chr10:28271105-28271106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs576403502	chr10:28271153-28271154	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs60814150	chr10:28271172-28271173	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs7923373	chr10:28271217-28271218	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs577432840	chr10:28271268-28271269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs541488580	chr10:28271273-28271274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs12415087	chr10:28271283-28271284	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs553623648	chr10:28271299-28271300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs530357591	chr10:28271303-28271304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs548494496	chr10:28271318-28271319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs563666566	chr10:28271351-28271352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs531092262	chr10:28271376-28271377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs549378896	chr10:28271404-28271405	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:45)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	22341455	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28239800-28287200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28251000-28283800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:28262600-28276000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:28265800-28278600	Weak transcription	Ovary	ovary
5	chr10:28268200-28271400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:28271400-28271800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:28271600-28272000	Active TSS	Brain Anterior Caudate	brain
8	chr10:28271800-28281000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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