Variant report
Variant | nsv138350 |
---|---|
Chromosome Location | chr19:56850602-56850873 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:2)
- CpG islands (count:61)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr19:56850658-56850708 | NHBE | bronchial: | n/a |
2 | chr19:56850658-56850708 | K562 | blood: | n/a |
3 | chr19:56850658-56850708 | HPAEpiC | pulmonary alveolar: | n/a |
4 | chr19:56850658-56850708 | Caco-2 | colon: | n/a |
5 | chr19:56850658-56850708 | Hepatocyte | liver: | n/a |
6 | chr19:56850658-56850708 | HCT-116 | colon: | n/a |
7 | chr19:56850658-56850708 | AG04450 | lung: | fetal |
8 | chr19:56850658-56850708 | HAEpiC | amniotic membrane: | n/a |
9 | chr19:56850658-56850708 | HRE | kidney: | n/a |
10 | chr19:56850658-56850708 | SKMC | muscle: | n/a |
11 | chr19:56850658-56850708 | AG09319 | gingival: | n/a |
12 | chr19:56850658-56850708 | BE2_C | brain: | n/a |
13 | chr19:56850658-56850708 | Jurkat | blood: | n/a |
14 | chr19:56850658-56850708 | HCF | heart: | n/a |
15 | chr19:56850658-56850708 | HepG2 | liver: | n/a |
16 | chr19:56850658-56850708 | SK-N-SH_RA | brain: | n/a |
17 | chr19:56850658-56850708 | HCM | heart: | n/a |
18 | chr19:56850658-56850708 | GM12878 | blood: | n/a |
19 | chr19:56850658-56850708 | HCPEpiC | choroid plexus: | n/a |
20 | chr19:56850658-56850708 | GM12892 | blood: | n/a |
21 | chr19:56850658-56850708 | HRPEpiC | eye: | n/a |
22 | chr19:56850658-56850708 | PFSK-1 | brain: | n/a |
23 | chr19:56850658-56850708 | LNCaP | prostate: | n/a |
24 | chr19:56850658-56850708 | NT2-D1 | testis: | n/a |
25 | chr19:56850658-56850708 | U87 | brain: | n/a |
26 | chr19:56850658-56850708 | CMK | blood: | n/a |
27 | chr19:56850658-56850708 | PrEC | prostate: | n/a |
28 | chr19:56850658-56850708 | PANC-1 | pancreas: | n/a |
29 | chr19:56850658-56850708 | MCF-7 | breast: | n/a |
30 | chr19:56850658-56850708 | H1-hESC | embryonic stem cell: | embryo |
31 | chr19:56850658-56850708 | MCF10A-Er-Src | breast: | n/a |
32 | chr19:56850658-56850708 | AG04449 | skin: | fetal |
33 | chr19:56850658-56850708 | HEEpiC | esophagus: | n/a |
34 | chr19:56850658-56850708 | NB4 | blood: | n/a |
35 | chr19:56850658-56850708 | T-47D | breast: | n/a |
36 | chr19:56850658-56850708 | A549 | lung: | n/a |
37 | chr19:56850658-56850708 | HUVEC | blood vessel: | n/a |
38 | chr19:56850658-56850708 | AoSMC | blood vessel: | n/a |
39 | chr19:56850658-56850708 | GM06990 | blood: | n/a |
40 | chr19:56850658-56850708 | HL-60 | blood: | n/a |
41 | chr19:56850658-56850708 | Hela-S3 | cervix: | n/a |
42 | chr19:56850658-56850708 | AG10803 | skin: | n/a |
43 | chr19:56850658-56850708 | SK-N-SH | brain: | n/a |
44 | chr19:56850658-56850708 | SK-N-MC | brain: | n/a |
45 | chr19:56850658-56850708 | BJ | skin: | n/a |
46 | chr19:56850658-56850708 | SAEC | small airway: | n/a |
47 | chr19:56850658-56850708 | HRCEpiC | kidney: | n/a |
48 | chr19:56850658-56850708 | GM12891 | blood: | n/a |
49 | chr19:56850658-56850708 | ProgFib | skin: | n/a |
50 | chr19:56850658-56850708 | HNPCEpiC | eye: | n/a |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000267145 | TF binding region |
ENSG00000267145 | CpG island |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs528291954 | chr19:56850609-56850610 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
2 | rs576761910 | chr19:56850610-56850611 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
3 | rs146740629 | chr19:56850613-56850614 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
4 | rs140284131 | chr19:56850625-56850626 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
5 | rs113340446 | chr19:56850633-56850634 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
6 | rs182692665 | chr19:56850635-56850636 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
7 | rs34663767 | chr19:56850643-56850644 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
8 | rs199589615 | chr19:56850644-56850645 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
9 | rs543407070 | chr19:56850656-56850657 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
10 | rs563364731 | chr19:56850658-56850659 | Weak transcription | TF binding regionCpG island | 1 gene(s) | Overlapped CNVs | n/a |
11 | rs531468948 | chr19:56850686-56850687 | Weak transcription | TF binding regionCpG island | 1 gene(s) | Overlapped CNVs | n/a |
12 | rs548113744 | chr19:56850690-56850691 | Weak transcription | TF binding regionCpG island | 1 gene(s) | Overlapped CNVs | n/a |
13 | rs8100966 | chr19:56850692-56850693 | Weak transcription | TF binding regionCpG island | 1 gene(s) | Overlapped CNVs | n/a |
14 | rs527542556 | chr19:56850701-56850702 | Weak transcription | TF binding regionCpG island | 1 gene(s) | Overlapped CNVs | n/a |
15 | rs547462700 | chr19:56850705-56850706 | Weak transcription | TF binding regionCpG island | 1 gene(s) | Overlapped CNVs | n/a |
16 | rs570413096 | chr19:56850720-56850721 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
17 | rs539522236 | chr19:56850724-56850725 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
18 | rs8101055 | chr19:56850726-56850727 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
19 | rs12972607 | chr19:56850727-56850728 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
20 | rs12972614 | chr19:56850735-56850736 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
21 | rs35843446 | chr19:56850760-56850761 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
22 | rs8103954 | chr19:56850794-56850795 | Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
23 | rs111772056 | chr19:56850805-56850806 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs140357367 | chr19:56850828-56850829 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs113909637 | chr19:56850839-56850840 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs145040544 | chr19:56850862-56850863 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs113291353 | chr19:56850871-56850872 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs550176458 | chr19:56850873-56850874 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Myelodysplastic syndrome | 17634407 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Cancer | 21637783 | CNVD |
Retinoblastoma | 21504564 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Cancer | 20164919 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Prostate cancer | 18632612 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
Congenital nephrotic syndrome | 18421352 | CNVD |
Astrocytoma | 17934521 | CNVD |
Leukemia | 17361228 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Breast cancer | 17603634 | CNVD |
Glioma | 21971842 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
renal disease | 20603712 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
Salivary gland adenoid cystic carcinoma | 17545515 | CNVD |
Breast cancer | 16608533 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Chordoma | 18071362 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Bladder cancer | 21909424 | CNVD |
Medulloblastoma | 16783165 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Multiple myeloma | 16616336 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
Wilms tumour | 21544195 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Congenital anomalies of the kidney and urinary tract | 18852474 | CNVD |
Glioblastoma multiforme | 17002787 | CNVD |
Cervical cancer | 21062161 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Prostate cancer | 16573809 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Lung cancer | 18438408 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Ovarian cancer | 21781307 | CNVD |
Neuroblastoma | 20406844 | CNVD |
Breast cancer | 21785460 | CNVD |
Myelofibrosis | 22110671 | CNVD |
T-cell acute lymphoblastic leukemia | 19406988 | CNVD |
Alzheimer''s disease | 22166940 | CNVD |
Heart disease | 21282601 | CNVD |
Diffuse large b-cell lymphoma | 18287131 | CNVD |
Glioblastoma multiforme | 21922591 | CNVD |
Non-syndromic sensorineural hearing loss | 18496225 | CNVD |
Basal cell lymphoma | 19029149 | CNVD |
Diffuse large b-cell lymphoma | 19029149 | CNVD |
Breast cancer | 20409316 | CNVD |
Non-syndromic sensorineural hearing loss | 17289997 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:56850400-56851600 | Weak transcription | Brain Dorsolateral Prefrontal Cortex | brain |