Variant report

Variant	nsv143
Chromosome Location	chr16:34378952-34732704
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1502)
CpG islands
(count:3724)
Chromatin interactive
region (count:4)
LncRNA
region (count:59)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1502 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr16:34574452-34574460	K562	blood:	n/a	n/a
2	ATF1	chr16:34715569-34715609	K562	blood:	n/a	n/a
3	ATF1	chr16:34643912-34644196	K562	blood:	n/a	n/a
4	ATF1	chr16:34625774-34626005	K562	blood:	n/a	n/a
5	ATF1	chr16:34486728-34487212	K562	blood:	n/a	n/a
6	ATF1	chr16:34573796-34574082	K562	blood:	n/a	n/a
7	ATF1	chr16:34589373-34589390	K562	blood:	n/a	n/a
8	BATF	chr16:34539865-34540180	GM12878	blood:	n/a	chr16:34540044-34540055
9	BATF	chr16:34539887-34540221	GM12878	blood:	n/a	chr16:34540044-34540055
10	BATF	chr16:34731803-34731989	GM12878	blood:	n/a	chr16:34731883-34731894 chr16:34731915-34731926
11	BATF	chr16:34536693-34536965	GM12878	blood:	n/a	chr16:34536834-34536845
12	BATF	chr16:34731793-34732055	GM12878	blood:	n/a	chr16:34731883-34731894 chr16:34731915-34731926
13	BHLHE40	chr16:34647001-34647022	GM12878	blood:	n/a	n/a
14	BHLHE40	chr16:34721874-34721912	GM12878	blood:	n/a	n/a
15	BHLHE40	chr16:34598011-34598017	K562	blood:	n/a	n/a
16	BHLHE40	chr16:34625806-34626006	GM12878	blood:	n/a	n/a
17	BHLHE40	chr16:34429795-34429892	K562	blood:	n/a	chr16:34429875-34429891
18	BHLHE40	chr16:34726730-34726951	K562	blood:	n/a	chr16:34726896-34726912
19	BHLHE40	chr16:34625401-34626021	K562	blood:	n/a	n/a
20	BHLHE40	chr16:34732021-34732023	GM12878	blood:	n/a	n/a
21	BRCA1	chr16:34666402-34666616	H1-hESC	embryonic stem cell:	n/a	n/a
22	BRCA1	chr16:34666658-34666728	GM12878	blood:	n/a	n/a
23	CBX3	chr16:34625799-34625988	K562	blood:	n/a	n/a
24	CEBPB	chr16:34632715-34632941	HepG2	liver:	n/a	n/a
25	CEBPB	chr16:34532887-34533747	HepG2	liver:	n/a	chr16:34533406-34533417
26	CEBPB	chr16:34731698-34731782	HepG2	liver:	n/a	n/a
27	CEBPB	chr16:34599864-34600530	HepG2	liver:	n/a	chr16:34600335-34600346
28	CEBPB	chr16:34603901-34604333	A549	lung:	n/a	n/a
29	CEBPB	chr16:34535207-34535347	HepG2	liver:	n/a	n/a
30	CEBPB	chr16:34533242-34533527	Hela-S3	cervix:	n/a	chr16:34533406-34533417
31	CEBPB	chr16:34449685-34450030	K562	blood:	n/a	n/a
32	CEBPB	chr16:34573711-34574084	HepG2	liver:	n/a	chr16:34573875-34573886
33	CEBPB	chr16:34531259-34531620	ECC-1	luminal epithelium:	n/a	n/a
34	CEBPB	chr16:34540417-34540828	HepG2	liver:	n/a	n/a
35	CEBPB	chr16:34530917-34531822	A549	lung:	n/a	n/a
36	CEBPB	chr16:34536217-34536514	HepG2	liver:	n/a	n/a
37	CEBPB	chr16:34425315-34425607	IMR90	lung:	n/a	chr16:34425466-34425477 chr16:34425464-34425477 chr16:34425464-34425477 chr16:34425464-34425475
38	CEBPB	chr16:34598601-34599065	A549	lung:	n/a	n/a
39	CEBPB	chr16:34540548-34540632	IMR90	lung:	n/a	n/a
40	CEBPB	chr16:34600160-34600470	ECC-1	luminal epithelium:	n/a	chr16:34600335-34600346
41	CEBPB	chr16:34542362-34542582	HepG2	liver:	n/a	n/a
42	CEBPB	chr16:34637648-34637812	K562	blood:	n/a	chr16:34637709-34637720
43	CEBPB	chr16:34573756-34574077	A549	lung:	n/a	chr16:34573875-34573886
44	CEBPB	chr16:34486670-34487169	HepG2	liver:	n/a	chr16:34486713-34486730
45	CEBPB	chr16:34602083-34602267	A549	lung:	n/a	n/a
46	CEBPB	chr16:34600051-34600514	ECC-1	luminal epithelium:	n/a	chr16:34600335-34600346
47	CEBPB	chr16:34449667-34450116	A549	lung:	n/a	n/a
48	CEBPB	chr16:34643898-34644263	HepG2	liver:	n/a	n/a
49	CEBPB	chr16:34685080-34685431	HepG2	liver:	n/a	n/a
50	CEBPB	chr16:34597947-34598296	A549	lung:	n/a	n/a

(count:3724 , 50 per page) page: 1 2 3 4 5 6 7 ... 75

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr16:34411816-34411866	AG04449	skin:	fetal
2	chr16:34442090-34442140	SAEC	small airway:	n/a
3	chr16:34430905-34430955	SK-N-SH	brain:	n/a
4	chr16:34411816-34411866	AG04449	skin:	fetal
5	chr16:34442090-34442140	SAEC	small airway:	n/a
6	chr16:34430905-34430955	SK-N-SH	brain:	n/a
7	chr16:34431003-34431053	AoSMC	blood vessel:	n/a
8	chr16:34598029-34598079	HPAEpiC	pulmonary alveolar:	n/a
9	chr16:34430382-34430432	Hela-S3	cervix:	n/a
10	chr16:34428061-34428111	HCF	heart:	n/a
11	chr16:34404054-34404104	HCM	heart:	n/a
12	chr16:34431003-34431053	HNPCEpiC	eye:	n/a
13	chr16:34489904-34489954	HCM	heart:	n/a
14	chr16:34430905-34430955	LNCaP	prostate:	n/a
15	chr16:34648955-34649005	HRE	kidney:	n/a
16	chr16:34442373-34442423	HCM	heart:	n/a
17	chr16:34407760-34407810	HCT-116	colon:	n/a
18	chr16:34445785-34445835	AG09319	gingival:	n/a
19	chr16:34648842-34648892	HAEpiC	amniotic membrane:	n/a
20	chr16:34408014-34408064	Jurkat	blood:	n/a
21	chr16:34726734-34726784	AoSMC	blood vessel:	n/a
22	chr16:34660044-34660094	SK-N-MC	brain:	n/a
23	chr16:34659664-34659714	SK-N-MC	brain:	n/a
24	chr16:34407868-34407918	GM06990	blood:	n/a
25	chr16:34428061-34428111	HAEpiC	amniotic membrane:	n/a
26	chr16:34431003-34431053	H1-hESC	embryonic stem cell:	embryo
27	chr16:34726856-34726906	CMK	blood:	n/a
28	chr16:34442602-34442652	HNPCEpiC	eye:	n/a
29	chr16:34432979-34433029	GM12878	blood:	n/a
30	chr16:34407715-34407765	IMR90	lung:	fetal
31	chr16:34404673-34404723	HL-60	blood:	n/a
32	chr16:34404673-34404723	T-47D	breast:	n/a
33	chr16:34407918-34407968	HCM	heart:	n/a
34	chr16:34456419-34456469	HEEpiC	esophagus:	n/a
35	chr16:34428985-34429035	BE2_C	brain:	n/a
36	chr16:34489904-34489954	GM12878	blood:	n/a
37	chr16:34404054-34404104	SK-N-MC	brain:	n/a
38	chr16:34649152-34649202	SAEC	small airway:	n/a
39	chr16:34430078-34430128	NHDF-neo	bronchial:	n/a
40	chr16:34380215-34380265	HCM	heart:	n/a
41	chr16:34660044-34660094	CMK	blood:	n/a
42	chr16:34407760-34407810	HEEpiC	esophagus:	n/a
43	chr16:34660044-34660094	SKMC	muscle:	n/a
44	chr16:34380215-34380265	HCF	heart:	n/a
45	chr16:34445785-34445835	T-47D	breast:	n/a
46	chr16:34443120-34443170	T-47D	breast:	n/a
47	chr16:34430837-34430887	U87	brain:	n/a
48	chr16:34428061-34428111	SK-N-MC	brain:	n/a
49	chr16:34409092-34409142	IMR90	lung:	fetal
50	chr16:34404524-34404574	GM12891	blood:	n/a

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:34429328..34431681-chr16:34466203..34469132,2	K562	blood:
2	chr16:34422640..34423667-chr16:34625487..34626782,3	MCF-7	breast:
3	chr16:34726782..34727382-chr16:34760283..34761051,3	MCF-7	breast:
4	chr16:34422640..34423667-chr16:34625487..34626782,3	MCF-7	breast:

(count:59 , 50 per page) page: 1 2

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CTD-2144E22.5.1-5	chr16:34482858-34483251	NONHSAT142170
2	lnc-CTD-2144E22.5.1-6	chr16:34597902-34598201	ENSG00000259841.2
3	lnc-LINC00273-25	chr16:34712988-34713065	NONHSAT142192
4	lnc-LINC00273-15	chr16:34383828-34384161	NONHSAT142158
5	lnc-CTD-2144E22.5.1-4	chr16:34477761-34477848	XLOC_011699
6	lnc-LINC00273-25	chr16:34714529-34714852	NONHSAT142191
7	lnc-CTD-2144E22.5.1-6	chr16:34615965-34616632	ENSG00000259841.2
8	lnc-CTD-2144E22.5.1-6	chr16:34614340-34614458	ENSG00000259841.2
9	lnc-CTD-2144E22.5.1-5	chr16:34518127-34518517	ENSG00000260958.2
10	lnc-CTD-2144E22.5.1-18	chr16:34493001-34494000	NONHSAT142176
11	lnc-LINC00273-25	chr16:34713293-34713362	NONHSAT142192
12	lnc-LINC00273-7	chr16:34730748-34730828	ENSG00000261445.1
13	lnc-LINC00273-18	chr16:34455954-34456419	NONHSAT142168
14	lnc-CTD-2144E22.5.1-6	chr16:34610877-34611020	NONHSAT142183
15	lnc-LINC00273-22	chr16:34569648-34570147	NONHSAT142179
16	lnc-LINC00273-24	chr16:34641562-34641720	NONHSAT142186
17	lnc-CTD-2144E22.5.1-5	chr16:34471671-34474425	NONHSAT142170
18	lnc-CTD-2144E22.5.1-6	chr16:34597787-34597899	NONHSAT142183
19	lnc-CTD-2144E22.5.1-5	chr16:34483054-34483172	ENSG00000260958.2
20	lnc-CTD-2144E22.5.1-5	chr16:34442330-34442392	ENSG00000260958.2
21	lnc-CTD-2144E22.5.1-6	chr16:34612943-34613184	NONHSAT142183
22	lnc-LINC00273-22	chr16:34570437-34570514	NONHSAT142179
23	lnc-CTD-2144E22.5.1-24	chr16:34581756-34582668	NONHSAT142180
24	lnc-LINC00273-7	chr16:34728125-34728568	ENSG00000261445.1
25	lnc-CTD-2144E22.5.1-6	chr16:34614340-34614458	NONHSAT142183
26	lnc-LINC00273-24	chr16:34640118-34640617	NONHSAT142186
27	lnc-CTD-2144E22.5.1-6	chr16:34616795-34616969	NONHSAT142183
28	lnc-CTD-2144E22.5.1-5	chr16:34442308-34442392	ENSG00000260958.2
29	lnc-CTD-2144E22.5.1-5	chr16:34487609-34488020	ENSG00000260958.2
30	lnc-LINC00273-25	chr16:34713636-34713810	NONHSAT142192
31	lnc-CTD-2144E22.5.1-17	chr16:34427706-34428105	NONHSAT142163
32	lnc-CTD-2144E22.5.1-6	chr16:34597783-34597899	ENSG00000259841.2
33	lnc-CTD-2144E22.5.1-29	chr16:34723608-34724583	NONHSAT142194
34	lnc-LINC00273-22	chr16:34571082-34571260	NONHSAT142179
35	lnc-CTD-2144E22.5.1-6	chr16:34612943-34613184	ENSG00000259841.2
36	lnc-LINC00273-23	chr16:34619259-34619457	NONHSAT142185
37	lnc-CTD-2144E22.5.1-6	chr16:34620250-34620420	NONHSAT142183
38	lnc-CTD-2144E22.5.1-6	chr16:34625678-34626084	NONHSAT142183
39	lnc-CTD-2144E22.5.1-6	chr16:34610877-34611020	ENSG00000259841.2
40	lnc-CTD-2144E22.5.1-4	chr16:34478641-34479038	XLOC_011699
41	lnc-CTD-2144E22.5.1-5	chr16:34487252-34487411	NONHSAT142170
42	lnc-LINC00273-7	chr16:34729913-34729959	ENSG00000261445.1
43	lnc-CTD-2144E22.5.1-5	chr16:34487252-34487506	ENSG00000260958.2
44	lnc-CTD-2144E22.5.1-6	chr16:34612943-34613184	ENSG00000259841.2
45	lnc-CTD-2144E22.5.1-4	chr16:34477709-34479085	NONHSAT142171
46	lnc-CTD-2144E22.5.1-6	chr16:34614340-34614458	ENSG00000259841.2
47	lnc-CTD-2144E22.5.1-6	chr16:34610877-34611020	ENSG00000259841.2
48	lnc-CTD-2144E22.5.1-6	chr16:34616840-34616969	ENSG00000259841.2
49	lnc-CTD-2144E22.5.1-6	chr16:34624074-34624955	ENSG00000259841.2
50	lnc-LINC00273-23	chr16:34618515-34618930	NONHSAT142185

No data

Variant related genes	Relation type
ENSG00000261510	TF binding region
UBE2MP1	TF binding region
ENSG00000260073	TF binding region
ENSG00000259836	TF binding region
ENSG00000259897	TF binding region
ENSG00000221532	TF binding region
ENSG00000260449	TF binding region
ENSG00000261752	TF binding region
ENSG00000261398	TF binding region
ENSG00000260291	TF binding region
ENSG00000261299	TF binding region
ENSG00000261445	TF binding region
AGGF1P4	TF binding region
ENSG00000261350	TF binding region
ENSG00000214581	TF binding region
RARRES2P5	TF binding region
ENSG00000260590	TF binding region
ENSG00000261274	TF binding region
RARRES2P7	TF binding region
RARRES2P6	TF binding region
ENSG00000260480	TF binding region
FGFR3P5	TF binding region
ENSG00000261836	TF binding region
SLC25A1P4	TF binding region
RARRES2P9	TF binding region
ENSG00000264479	TF binding region
ENSG00000260427	TF binding region
ENSG00000260341	TF binding region
ENSG00000260598	TF binding region
ENSG00000260958	TF binding region
ENSG00000260153	TF binding region
ENSG00000259841	TF binding region
ENSG00000261711	TF binding region
ENSG00000260680	TF binding region
ENSG00000260846	TF binding region
ENSG00000261510	CpG island
UBE2MP1	CpG island
ENSG00000260073	CpG island
ENSG00000259836	CpG island
ENSG00000259897	CpG island
ENSG00000221532	CpG island
ENSG00000260449	CpG island
ENSG00000261752	CpG island
ENSG00000261398	CpG island
ENSG00000260291	CpG island
ENSG00000261299	CpG island
ENSG00000261445	CpG island
AGGF1P4	CpG island
ENSG00000261350	CpG island
ENSG00000214581	CpG island
RARRES2P5	CpG island
ENSG00000260590	CpG island
ENSG00000261274	CpG island
RARRES2P7	CpG island
RARRES2P6	CpG island
ENSG00000260480	CpG island
FGFR3P5	CpG island
ENSG00000261836	CpG island
SLC25A1P4	CpG island
RARRES2P9	CpG island
ENSG00000264479	CpG island
ENSG00000260427	CpG island
ENSG00000260341	CpG island
ENSG00000260598	CpG island
ENSG00000260958	CpG island
ENSG00000260153	CpG island
ENSG00000259841	CpG island
ENSG00000261711	CpG island
ENSG00000260680	CpG island
ENSG00000260846	CpG island
ENSG00000261398	chromatin interactions
ENSG00000260073	chromatin interactions

Extended variants
information (count: 6261 )
Associated
traits (count: 131 )

Variant overlapped rSNPs/rCNVs (count:6261 , 50 per page) page: 1 2 3 4 5 6 7 ... 126

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs540807796	chr16:34378964-34378965	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs543194187	chr16:34378982-34378983	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs8054102	chr16:34378999-34379000	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs527772799	chr16:34379005-34379006	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs35730323	chr16:34379017-34379018	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs552298322	chr16:34379026-34379027	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs189426335	chr16:34379053-34379054	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs531687533	chr16:34379059-34379060	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs116812900	chr16:34379060-34379061	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs150883262	chr16:34379117-34379118	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs568708290	chr16:34379132-34379133	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs576570060	chr16:34379141-34379142	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs151073620	chr16:34379150-34379151	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs554389665	chr16:34379163-34379164	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs566315863	chr16:34379207-34379208	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs2630995	chr16:34379278-34379279	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs557847030	chr16:34379394-34379395	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs576073507	chr16:34379411-34379412	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs61443621	chr16:34379419-34379420	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs150202340	chr16:34379461-34379462	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs138069165	chr16:34379473-34379474	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs573866752	chr16:34379506-34379507	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs181662980	chr16:34379581-34379582	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs184636410	chr16:34379614-34379615	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs532913312	chr16:34379663-34379664	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs544810833	chr16:34379664-34379665	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs189004741	chr16:34379701-34379702	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs531732109	chr16:34379785-34379786	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs182051942	chr16:34379844-34379845	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs561974527	chr16:34379879-34379880	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs529601539	chr16:34379899-34379900	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs112868153	chr16:34379904-34379905	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs75305079	chr16:34379905-34379906	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs551705134	chr16:34379906-34379907	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs201584002	chr16:34379964-34379965	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs569714247	chr16:34379966-34379967	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs187170191	chr16:34379982-34379983	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs555334496	chr16:34379997-34379998	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs79214645	chr16:34380004-34380005	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs534319908	chr16:34380022-34380023	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs552805895	chr16:34380053-34380054	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs577529953	chr16:34380055-34380056	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs117118009	chr16:34380074-34380075	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs7184379	chr16:34380081-34380082	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs77967625	chr16:34380105-34380106	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs376697152	chr16:34380141-34380142	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs547433344	chr16:34380159-34380160	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs66502738	chr16:34380167-34380168	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs75329288	chr16:34380169-34380170	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs77796512	chr16:34380171-34380172	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:131)

Disease	PMID	Source
Hodgkin''s lymphoma	20651079	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	18172304	CNVD
Breast cancer	16608533	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Autism	22566537	CNVD
Intellectual disability	22566537	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Ductal carcinoma	22052326	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Hepatocellular carcinoma	16750200	CNVD
Mental retardation	19951919	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21990379	CNVD
Astrocytoma	22246337	CNVD
Myelofibrosis	22110671	CNVD
Epilepsy	22499536	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Austim spectrum disorder	21302340	CNVD
Autism	22513405	CNVD
Autism	22958593	CNVD
Autism	18184952	CNVD
Autism	19966786	CNVD
Autism	21394203	CNVD
Autism	21969575	CNVD
Autism	22241247	CNVD
Autism	20970697	CNVD
Autism	20942916	CNVD
Epilepsy	20970697	CNVD
Intellectual disability	22045946	CNVD
Mental retardation	19966786	CNVD
Developmental delay	20808231	CNVD
Obesity	20808231	CNVD
Autism	18923514	CNVD
Obesity	21881559	CNVD
Obesity	21956041	CNVD
Autism	20659124	CNVD
Mental retardation	21062444	CNVD
Schizophrenia	20587603	CNVD
Schizophrenia	21285140	CNVD
Schizophrenia	22885689	CNVD
Schizophrenia	20553308	CNVD
Schizophrenia	20970697	CNVD
Schizophrenia	20433910	CNVD
Schizophrenia	22241247	CNVD
Autism	19242545	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Intracranial ependymoma	16609018	CNVD
Schizophrenia	21399695	CNVD
Autism	21956041	CNVD
Disorders of sex development	21048976	CNVD
Autism	22067053	CNVD
Autism	18156158	CNVD
Mental retardation	20152051	CNVD
Autism	19218893	CNVD
Autism	21289514	CNVD
Schizophrenia	19855392	CNVD
neurodevelopmental Syndrome	20503337	CNVD
Benign familial neonatal-infantile seizures	21060786	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Cancer	21183584	CNVD
Low-grade fibromyxoid sarcoma	21536545	CNVD
Breast cancer	21045282	CNVD
Neuroblastoma	20406844	CNVD
Autism	19050728	CNVD
Epilepsy	20923578	CNVD
Psychiatric disorder	19050728	CNVD
Schizophrenia	19348701	CNVD
Attention deficit hyperactivity disorder	19097825	CNVD
Autism	20964600	CNVD
Schizophrenia	19955444	CNVD
Schizophrenia	18990708	CNVD
Schizophrenia	19571808	CNVD
Breast cancer	20409316	CNVD
Severe combined immunodeficiency	19097825	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Autism	18522746	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	21364760	CNVD
Renal cell carcinoma	18194544	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Schizophrenia	20967226	CNVD
Williams Syndrome	20824207	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Schizophrenia	23813976	CNVD
Bipolar disorder	19214233	CNVD
early-passage human iPS cells	21368824	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Rett syndrome	21593744	CNVD
Autism	19287141	CNVD
Prostate cancer	18632612	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Autism	18414403	CNVD

Chromatin state (count:180 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:34374000-34387000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr16:34379000-34384200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:34380400-34385200	ZNF genes & repeats	Fetal Brain Female	brain
4	chr16:34380800-34383200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
5	chr16:34381000-34382400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr16:34382600-34382800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr16:34385200-34385800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr16:34386000-34386200	ZNF genes & repeats	Fetal Stomach	stomach
9	chr16:34407600-34409200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr16:34408200-34409000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr16:34408400-34409000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr16:34409000-34410800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr16:34409200-34410600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr16:34410600-34411600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr16:34410800-34411600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr16:34411200-34411400	Enhancers	Right Atrium	heart
17	chr16:34415000-34419400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
18	chr16:34416200-34416400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr16:34416200-34417400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
20	chr16:34418800-34419400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
21	chr16:34419600-34422800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
22	chr16:34420000-34422200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr16:34420400-34420800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
24	chr16:34421000-34421200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr16:34423000-34423200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr16:34429200-34433000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
27	chr16:34429400-34429600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
28	chr16:34429400-34430400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr16:34432200-34433400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr16:34437400-34438400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr16:34438400-34441200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr16:34441200-34442800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr16:34441400-34442600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
34	chr16:34442000-34443200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
35	chr16:34442200-34443000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr16:34442200-34443000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr16:34442600-34442800	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr16:34456000-34456800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr16:34456200-34456400	ZNF genes & repeats	Gastric	stomach
40	chr16:34456200-34456600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr16:34465600-34466200	Active TSS	ES-I3 Cell Line	embryonic stem cell
42	chr16:34465600-34466200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
43	chr16:34466600-34472200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
44	chr16:34466800-34467000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr16:34466800-34469400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr16:34467000-34468200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
47	chr16:34467000-34470200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr16:34468200-34469400	ZNF genes & repeats	Brain Germinal Matrix	brain
49	chr16:34474800-34476000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr16:34478600-34479000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links