Variant report
Variant | nsv144 |
---|---|
Chromosome Location | chr16:34390796-34715796 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1393)
- CpG islands (count:3487)
- Chromatin interactive region (count:3)
- LncRNA region (count:54)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ATF1 | chr16:34715569-34715609 | K562 | blood: | n/a | n/a |
2 | ATF1 | chr16:34643912-34644196 | K562 | blood: | n/a | n/a |
3 | ATF1 | chr16:34589373-34589390 | K562 | blood: | n/a | n/a |
4 | ATF1 | chr16:34486728-34487212 | K562 | blood: | n/a | n/a |
5 | ATF1 | chr16:34573796-34574082 | K562 | blood: | n/a | n/a |
6 | ATF1 | chr16:34625774-34626005 | K562 | blood: | n/a | n/a |
7 | ATF1 | chr16:34574452-34574460 | K562 | blood: | n/a | n/a |
8 | BATF | chr16:34539887-34540221 | GM12878 | blood: | n/a | chr16:34540044-34540055 |
9 | BATF | chr16:34536693-34536965 | GM12878 | blood: | n/a | chr16:34536834-34536845 |
10 | BATF | chr16:34539865-34540180 | GM12878 | blood: | n/a | chr16:34540044-34540055 |
11 | BHLHE40 | chr16:34598011-34598017 | K562 | blood: | n/a | n/a |
12 | BHLHE40 | chr16:34429795-34429892 | K562 | blood: | n/a | chr16:34429875-34429891 |
13 | BHLHE40 | chr16:34625401-34626021 | K562 | blood: | n/a | n/a |
14 | BHLHE40 | chr16:34647001-34647022 | GM12878 | blood: | n/a | n/a |
15 | BHLHE40 | chr16:34625806-34626006 | GM12878 | blood: | n/a | n/a |
16 | BRCA1 | chr16:34666402-34666616 | H1-hESC | embryonic stem cell: | n/a | n/a |
17 | BRCA1 | chr16:34666658-34666728 | GM12878 | blood: | n/a | n/a |
18 | CBX3 | chr16:34625799-34625988 | K562 | blood: | n/a | n/a |
19 | CEBPB | chr16:34598601-34599065 | A549 | lung: | n/a | n/a |
20 | CEBPB | chr16:34536217-34536514 | HepG2 | liver: | n/a | n/a |
21 | CEBPB | chr16:34637648-34637812 | K562 | blood: | n/a | chr16:34637709-34637720 |
22 | CEBPB | chr16:34573756-34574077 | A549 | lung: | n/a | chr16:34573875-34573886 |
23 | CEBPB | chr16:34532926-34533600 | ECC-1 | luminal epithelium: | n/a | chr16:34533406-34533417 |
24 | CEBPB | chr16:34530917-34531822 | A549 | lung: | n/a | n/a |
25 | CEBPB | chr16:34602083-34602267 | A549 | lung: | n/a | n/a |
26 | CEBPB | chr16:34715416-34715653 | IMR90 | lung: | n/a | n/a |
27 | CEBPB | chr16:34715384-34715712 | HepG2 | liver: | n/a | n/a |
28 | CEBPB | chr16:34573711-34574084 | HepG2 | liver: | n/a | chr16:34573875-34573886 |
29 | CEBPB | chr16:34611204-34611408 | HepG2 | liver: | n/a | chr16:34611274-34611285 |
30 | CEBPB | chr16:34540417-34540828 | HepG2 | liver: | n/a | n/a |
31 | CEBPB | chr16:34486734-34487193 | K562 | blood: | n/a | n/a |
32 | CEBPB | chr16:34621172-34621181 | HepG2 | liver: | n/a | n/a |
33 | CEBPB | chr16:34449667-34450116 | A549 | lung: | n/a | n/a |
34 | CEBPB | chr16:34600051-34600514 | ECC-1 | luminal epithelium: | n/a | chr16:34600335-34600346 |
35 | CEBPB | chr16:34643898-34644263 | HepG2 | liver: | n/a | n/a |
36 | CEBPB | chr16:34514068-34514216 | HepG2 | liver: | n/a | n/a |
37 | CEBPB | chr16:34449630-34450134 | HepG2 | liver: | n/a | n/a |
38 | CEBPB | chr16:34637662-34637759 | A549 | lung: | n/a | chr16:34637709-34637720 |
39 | CEBPB | chr16:34611205-34611346 | A549 | lung: | n/a | chr16:34611274-34611285 |
40 | CEBPB | chr16:34603901-34604333 | A549 | lung: | n/a | n/a |
41 | CEBPB | chr16:34483631-34483649 | K562 | blood: | n/a | n/a |
42 | CEBPB | chr16:34643905-34644193 | A549 | lung: | n/a | n/a |
43 | CEBPB | chr16:34483511-34483748 | HepG2 | liver: | n/a | n/a |
44 | CEBPB | chr16:34486751-34487148 | Hela-S3 | cervix: | n/a | n/a |
45 | CEBPB | chr16:34540421-34540653 | ECC-1 | luminal epithelium: | n/a | n/a |
46 | CEBPB | chr16:34632715-34632941 | HepG2 | liver: | n/a | n/a |
47 | CEBPB | chr16:34573755-34574035 | K562 | blood: | n/a | chr16:34573875-34573886 |
48 | CEBPB | chr16:34486708-34487148 | A549 | lung: | n/a | chr16:34486713-34486730 |
49 | CEBPB | chr16:34542362-34542582 | HepG2 | liver: | n/a | n/a |
50 | CEBPB | chr16:34600044-34600501 | Hela-S3 | cervix: | n/a | chr16:34600335-34600346 |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr16:34404054-34404104 | Jurkat | blood: | n/a |
2 | chr16:34403971-34404021 | ECC-1 | luminal epithelium: | n/a |
3 | chr16:34583045-34583095 | Hela-S3 | cervix: | n/a |
4 | chr16:34596941-34596991 | HAEpiC | amniotic membrane: | n/a |
5 | chr16:34578819-34578869 | HMEC | breast: | n/a |
6 | chr16:34579002-34579052 | NB4 | blood: | n/a |
7 | chr16:34430837-34430887 | HL-60 | blood: | n/a |
8 | chr16:34432979-34433029 | HUVEC | blood vessel: | n/a |
9 | chr16:34404774-34404824 | HAEpiC | amniotic membrane: | n/a |
10 | chr16:34404619-34404669 | LNCaP | prostate: | n/a |
11 | chr16:34404054-34404104 | Jurkat | blood: | n/a |
12 | chr16:34403971-34404021 | ECC-1 | luminal epithelium: | n/a |
13 | chr16:34583045-34583095 | Hela-S3 | cervix: | n/a |
14 | chr16:34596941-34596991 | HAEpiC | amniotic membrane: | n/a |
15 | chr16:34578819-34578869 | HMEC | breast: | n/a |
16 | chr16:34579002-34579052 | NB4 | blood: | n/a |
17 | chr16:34430837-34430887 | HL-60 | blood: | n/a |
18 | chr16:34432979-34433029 | HUVEC | blood vessel: | n/a |
19 | chr16:34404774-34404824 | HAEpiC | amniotic membrane: | n/a |
20 | chr16:34404619-34404669 | LNCaP | prostate: | n/a |
21 | chr16:34489904-34489954 | NHDF-neo | bronchial: | n/a |
22 | chr16:34404774-34404824 | Hepatocyte | liver: | n/a |
23 | chr16:34404673-34404723 | HL-60 | blood: | n/a |
24 | chr16:34430382-34430432 | NT2-D1 | testis: | n/a |
25 | chr16:34430837-34430887 | PrEC | prostate: | n/a |
26 | chr16:34404772-34404822 | HCF | heart: | n/a |
27 | chr16:34407918-34407968 | AG09319 | gingival: | n/a |
28 | chr16:34430837-34430887 | NHDF-neo | bronchial: | n/a |
29 | chr16:34659664-34659714 | Hela-S3 | cervix: | n/a |
30 | chr16:34596583-34596633 | AG04450 | lung: | fetal |
31 | chr16:34403971-34404021 | RPTEC | kidney: | n/a |
32 | chr16:34411816-34411866 | ProgFib | skin: | n/a |
33 | chr16:34405690-34405740 | HCM | heart: | n/a |
34 | chr16:34404524-34404574 | Hepatocyte | liver: | n/a |
35 | chr16:34432979-34433029 | HMEC | breast: | n/a |
36 | chr16:34598029-34598079 | NH-A | brain: | n/a |
37 | chr16:34587120-34587170 | HMEC | breast: | n/a |
38 | chr16:34429609-34429659 | HUVEC | blood vessel: | n/a |
39 | chr16:34596583-34596633 | H1-hESC | embryonic stem cell: | embryo |
40 | chr16:34443120-34443170 | SK-N-SH_RA | brain: | n/a |
41 | chr16:34712713-34712763 | ECC-1 | luminal epithelium: | n/a |
42 | chr16:34578819-34578869 | A549 | lung: | n/a |
43 | chr16:34660044-34660094 | HCF | heart: | n/a |
44 | chr16:34659771-34659821 | HL-60 | blood: | n/a |
45 | chr16:34430905-34430955 | AG09309 | skin: | n/a |
46 | chr16:34663929-34663979 | AG04449 | skin: | fetal |
47 | chr16:34429609-34429659 | U87 | brain: | n/a |
48 | chr16:34428985-34429035 | AoSMC | blood vessel: | n/a |
49 | chr16:34663929-34663979 | HRPEpiC | eye: | n/a |
50 | chr16:34408014-34408064 | CMK | blood: | n/a |
(count:3 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-CTD-2144E22.5.1-6 | chr16:34597787-34597899 | NONHSAT142183 |
2 | lnc-CTD-2144E22.5.1-6 | chr16:34610877-34611020 | NONHSAT142183 |
3 | lnc-CTD-2144E22.5.1-6 | chr16:34614340-34614458 | ENSG00000259841.2 |
4 | lnc-CTD-2144E22.5.1-18 | chr16:34493001-34494000 | NONHSAT142176 |
5 | lnc-LINC00273-25 | chr16:34713636-34713735 | NONHSAT142191 |
6 | lnc-CTD-2144E22.5.1-6 | chr16:34612943-34613184 | ENSG00000259841.2 |
7 | lnc-CTD-2144E22.5.1-6 | chr16:34612943-34613184 | ENSG00000259841.2 |
8 | lnc-CTD-2144E22.5.1-5 | chr16:34483054-34483172 | ENSG00000260958.2 |
9 | lnc-CTD-2144E22.5.1-6 | chr16:34614340-34614458 | NONHSAT142183 |
10 | lnc-LINC00273-25 | chr16:34712988-34713065 | NONHSAT142192 |
11 | lnc-CTD-2144E22.5.1-5 | chr16:34487252-34487506 | ENSG00000260958.2 |
12 | lnc-LINC00273-25 | chr16:34712988-34713065 | NONHSAT142191 |
13 | lnc-CTD-2144E22.5.1-5 | chr16:34442308-34442392 | ENSG00000260958.2 |
14 | lnc-LINC00273-25 | chr16:34713636-34713810 | NONHSAT142192 |
15 | lnc-LINC00273-22 | chr16:34569648-34570147 | NONHSAT142179 |
16 | lnc-LINC00273-24 | chr16:34640930-34641001 | NONHSAT142186 |
17 | lnc-CTD-2144E22.5.1-4 | chr16:34478641-34479038 | XLOC_011699 |
18 | lnc-LINC00273-24 | chr16:34640118-34640617 | NONHSAT142186 |
19 | lnc-LINC00273-18 | chr16:34455954-34456419 | NONHSAT142168 |
20 | lnc-CTD-2144E22.5.1-6 | chr16:34615965-34616632 | ENSG00000259841.2 |
21 | lnc-CTD-2144E22.5.1-6 | chr16:34620250-34620420 | ENSG00000259841.2 |
22 | lnc-LINC00273-25 | chr16:34712350-34712699 | NONHSAT142191 |
23 | lnc-CTD-2144E22.5.1-4 | chr16:34477709-34479085 | NONHSAT142171 |
24 | lnc-CTD-2144E22.5.1-6 | chr16:34616795-34616969 | NONHSAT142183 |
25 | lnc-CTD-2144E22.5.1-17 | chr16:34427706-34428105 | NONHSAT142163 |
26 | lnc-CTD-2144E22.5.1-5 | chr16:34518127-34518517 | ENSG00000260958.2 |
27 | lnc-CTD-2144E22.5.1-6 | chr16:34620250-34620420 | NONHSAT142183 |
28 | lnc-CTD-2144E22.5.1-5 | chr16:34442330-34442392 | ENSG00000260958.2 |
29 | lnc-LINC00273-24 | chr16:34641253-34641302 | NONHSAT142186 |
30 | lnc-LINC00273-25 | chr16:34713293-34713362 | NONHSAT142192 |
31 | lnc-CTD-2144E22.5.1-5 | chr16:34471671-34474425 | NONHSAT142170 |
32 | lnc-CTD-2144E22.5.1-5 | chr16:34482858-34483251 | NONHSAT142170 |
33 | lnc-LINC00273-22 | chr16:34570743-34570817 | NONHSAT142179 |
34 | lnc-LINC00273-25 | chr16:34714529-34714852 | NONHSAT142191 |
35 | lnc-LINC00273-23 | chr16:34619259-34619457 | NONHSAT142185 |
36 | lnc-LINC00273-23 | chr16:34618515-34618930 | NONHSAT142185 |
37 | lnc-CTD-2144E22.5.1-6 | chr16:34597902-34598201 | ENSG00000259841.2 |
38 | lnc-CTD-2144E22.5.1-6 | chr16:34616840-34616969 | ENSG00000259841.2 |
39 | lnc-CTD-2144E22.5.1-6 | chr16:34612943-34613184 | NONHSAT142183 |
40 | lnc-LINC00273-22 | chr16:34571082-34571260 | NONHSAT142179 |
41 | lnc-CTD-2144E22.5.1-24 | chr16:34581756-34582668 | NONHSAT142180 |
42 | lnc-CTD-2144E22.5.1-6 | chr16:34624074-34624955 | ENSG00000259841.2 |
43 | lnc-LINC00273-24 | chr16:34641562-34641720 | NONHSAT142186 |
44 | lnc-CTD-2144E22.5.1-6 | chr16:34610877-34611020 | ENSG00000259841.2 |
45 | lnc-CTD-2144E22.5.1-6 | chr16:34614340-34614458 | ENSG00000259841.2 |
46 | lnc-CTD-2144E22.5.1-6 | chr16:34610877-34611020 | ENSG00000259841.2 |
47 | lnc-CTD-2144E22.5.1-5 | chr16:34487252-34487411 | NONHSAT142170 |
48 | lnc-CTD-2144E22.5.1-6 | chr16:34625678-34626084 | NONHSAT142183 |
49 | lnc-CTD-2144E22.5.1-4 | chr16:34477761-34477848 | XLOC_011699 |
50 | lnc-CTD-2144E22.5.1-6 | chr16:34617082-34617226 | ENSG00000259841.2 |
No data |
No data |
Variant related genes | Relation type |
---|---|
UBE2MP1 | TF binding region |
ENSG00000260073 | TF binding region |
ENSG00000259897 | TF binding region |
ENSG00000221532 | TF binding region |
ENSG00000261752 | TF binding region |
ENSG00000261398 | TF binding region |
ENSG00000260291 | TF binding region |
ENSG00000261299 | TF binding region |
AGGF1P4 | TF binding region |
ENSG00000214581 | TF binding region |
RARRES2P5 | TF binding region |
ENSG00000260590 | TF binding region |
ENSG00000261274 | TF binding region |
RARRES2P7 | TF binding region |
RARRES2P6 | TF binding region |
ENSG00000260480 | TF binding region |
FGFR3P5 | TF binding region |
SLC25A1P4 | TF binding region |
RARRES2P9 | TF binding region |
ENSG00000264479 | TF binding region |
ENSG00000260427 | TF binding region |
ENSG00000260598 | TF binding region |
ENSG00000260958 | TF binding region |
ENSG00000259841 | TF binding region |
ENSG00000261711 | TF binding region |
ENSG00000260680 | TF binding region |
ENSG00000260846 | TF binding region |
UBE2MP1 | CpG island |
ENSG00000260073 | CpG island |
ENSG00000259897 | CpG island |
ENSG00000221532 | CpG island |
ENSG00000261752 | CpG island |
ENSG00000261398 | CpG island |
ENSG00000260291 | CpG island |
ENSG00000261299 | CpG island |
AGGF1P4 | CpG island |
ENSG00000214581 | CpG island |
RARRES2P5 | CpG island |
ENSG00000260590 | CpG island |
ENSG00000261274 | CpG island |
RARRES2P7 | CpG island |
RARRES2P6 | CpG island |
ENSG00000260480 | CpG island |
FGFR3P5 | CpG island |
SLC25A1P4 | CpG island |
RARRES2P9 | CpG island |
ENSG00000264479 | CpG island |
ENSG00000260427 | CpG island |
ENSG00000260598 | CpG island |
ENSG00000260958 | CpG island |
ENSG00000259841 | CpG island |
ENSG00000261711 | CpG island |
ENSG00000260680 | CpG island |
ENSG00000260846 | CpG island |
ENSG00000261398 | chromatin interactions |
ENSG00000260073 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs207475857 | chr16:34403918-34403919 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
2 | rs376447700 | chr16:34403962-34403963 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
3 | rs550027453 | chr16:34403965-34403966 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
4 | rs568048991 | chr16:34403966-34403967 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
5 | rs553599270 | chr16:34403971-34403972 | Inactive region | CpG island | 1 gene(s) | Overlapped CNVs | n/a |
6 | rs571914493 | chr16:34403975-34403976 | Inactive region | CpG island | 1 gene(s) | Overlapped CNVs | n/a |
7 | rs534260968 | chr16:34403976-34403977 | Inactive region | CpG island | 1 gene(s) | Overlapped CNVs | n/a |
8 | rs111444300 | chr16:34403979-34403980 | Inactive region | CpG island | 1 gene(s) | Overlapped CNVs | n/a |
9 | rs558801378 | chr16:34403980-34403981 | Inactive region | CpG island | 1 gene(s) | Overlapped CNVs | n/a |
10 | rs2170422 | chr16:34403989-34403990 | Inactive region | CpG island | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
11 | rs544310123 | chr16:34403995-34403996 | Inactive region | CpG island | 1 gene(s) | Overlapped CNVs | n/a |
12 | rs549879501 | chr16:34404006-34404007 | Inactive region | CpG island | 1 gene(s) | Overlapped CNVs | n/a |
13 | rs545855022 | chr16:34404080-34404081 | Inactive region | CpG island | 1 gene(s) | Overlapped CNVs | n/a |
14 | rs564054509 | chr16:34404092-34404093 | Inactive region | CpG island | 1 gene(s) | Overlapped CNVs | n/a |
15 | rs530442470 | chr16:34404328-34404329 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
16 | rs564199246 | chr16:34404346-34404347 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
17 | rs531352975 | chr16:34404445-34404446 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
18 | rs543117936 | chr16:34404464-34404465 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
19 | rs561308734 | chr16:34404512-34404513 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
20 | rs528876619 | chr16:34404539-34404540 | Inactive region | TF binding regionCpG island | 1 gene(s) | Overlapped CNVs | n/a |
21 | rs7206496 | chr16:34404560-34404561 | Inactive region | TF binding regionCpG island | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | n/a |
22 | rs565866078 | chr16:34404561-34404562 | Inactive region | TF binding regionCpG island | 1 gene(s) | Overlapped CNVs | n/a |
23 | rs533136672 | chr16:34404608-34404609 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
24 | rs551331136 | chr16:34404619-34404620 | Inactive region | TF binding regionCpG island | 2 gene(s) | Overlapped CNVs | n/a |
25 | rs569833031 | chr16:34404629-34404630 | Inactive region | TF binding regionCpG island | 2 gene(s) | Overlapped CNVs | n/a |
26 | rs538299730 | chr16:34404714-34404715 | Inactive region | TF binding regionCpG island | 2 gene(s) | Overlapped CNVs | n/a |
27 | rs556707968 | chr16:34404722-34404723 | Inactive region | TF binding regionCpG island | 2 gene(s) | Overlapped CNVs | n/a |
28 | rs568435788 | chr16:34404784-34404785 | Inactive region | TF binding regionCpG island | 2 gene(s) | Overlapped CNVs | n/a |
29 | rs367614885 | chr16:34404802-34404803 | Inactive region | TF binding regionCpG island | 2 gene(s) | Overlapped CNVs | n/a |
30 | rs535878460 | chr16:34404839-34404840 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
31 | rs576901376 | chr16:34405039-34405040 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
32 | rs558022275 | chr16:34405080-34405081 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
33 | rs576589011 | chr16:34405149-34405150 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
34 | rs370596190 | chr16:34405151-34405152 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
35 | rs72810758 | chr16:34405187-34405188 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
36 | rs543529249 | chr16:34405199-34405200 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
37 | rs114297266 | chr16:34405216-34405217 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
38 | rs573464246 | chr16:34405256-34405257 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
39 | rs144138303 | chr16:34405259-34405260 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
40 | rs148280072 | chr16:34405269-34405270 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
41 | rs559055357 | chr16:34405276-34405277 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
42 | rs371098976 | chr16:34405280-34405281 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
43 | rs191366192 | chr16:34405307-34405308 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
44 | rs533028357 | chr16:34405332-34405333 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
45 | rs76282148 | chr16:34405643-34405644 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
46 | rs370169201 | chr16:34405710-34405711 | Inactive region | TF binding regionCpG island | 2 gene(s) | Overlapped CNVs | n/a |
47 | rs183724556 | chr16:34405728-34405729 | Inactive region | TF binding regionCpG island | 2 gene(s) | Overlapped CNVs | n/a |
48 | rs577580162 | chr16:34405733-34405734 | Inactive region | TF binding regionCpG island | 2 gene(s) | Overlapped CNVs | n/a |
49 | rs531565408 | chr16:34405760-34405761 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
50 | rs544944361 | chr16:34405784-34405785 | Inactive region | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Hodgkin''s lymphoma | 20651079 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
Melanoma | 18172304 | CNVD |
Breast cancer | 16608533 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 17133270 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Lung adenocarcinoma | 17086460 | CNVD |
Lung cancer | 17086460 | CNVD |
Autism | 22566537 | CNVD |
Intellectual disability | 22566537 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 17603634 | CNVD |
Breast cancer | 21264507 | CNVD |
Cervical cancer | 21063398 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Autism | 19415332 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Schizophrenia | 22958593 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Autism | 22495311 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Breast cancer | 21858162 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Mental retardation | 19951919 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Breast cancer | 21785460 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Breast cancer | 21990379 | CNVD |
Astrocytoma | 22246337 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Epilepsy | 22499536 | CNVD |
Attention deficit hyperactivity disorder | 21324949 | CNVD |
Austim spectrum disorder | 21302340 | CNVD |
Autism | 22513405 | CNVD |
Autism | 22958593 | CNVD |
Autism | 18184952 | CNVD |
Autism | 19966786 | CNVD |
Autism | 21394203 | CNVD |
Autism | 21969575 | CNVD |
Autism | 22241247 | CNVD |
Autism | 20970697 | CNVD |
Autism | 20942916 | CNVD |
Epilepsy | 20970697 | CNVD |
Intellectual disability | 22045946 | CNVD |
Mental retardation | 19966786 | CNVD |
Developmental delay | 20808231 | CNVD |
Obesity | 20808231 | CNVD |
Autism | 18923514 | CNVD |
Obesity | 21881559 | CNVD |
Obesity | 21956041 | CNVD |
Autism | 20659124 | CNVD |
Mental retardation | 21062444 | CNVD |
Schizophrenia | 20587603 | CNVD |
Schizophrenia | 21285140 | CNVD |
Schizophrenia | 22885689 | CNVD |
Schizophrenia | 20553308 | CNVD |
Schizophrenia | 20970697 | CNVD |
Schizophrenia | 20433910 | CNVD |
Schizophrenia | 22241247 | CNVD |
Autism | 19242545 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Intracranial ependymoma | 16609018 | CNVD |
Schizophrenia | 21399695 | CNVD |
Autism | 21956041 | CNVD |
Disorders of sex development | 21048976 | CNVD |
Autism | 22067053 | CNVD |
Autism | 18156158 | CNVD |
Mental retardation | 20152051 | CNVD |
Autism | 19218893 | CNVD |
Autism | 21289514 | CNVD |
Schizophrenia | 19855392 | CNVD |
neurodevelopmental Syndrome | 20503337 | CNVD |
Benign familial neonatal-infantile seizures | 21060786 | CNVD |
Low-grade fibromyxoid sarcoma | 0 | CNVD |
Cancer | 21183584 | CNVD |
Low-grade fibromyxoid sarcoma | 21536545 | CNVD |
Breast cancer | 21045282 | CNVD |
Neuroblastoma | 20406844 | CNVD |
Autism | 19050728 | CNVD |
Epilepsy | 20923578 | CNVD |
Psychiatric disorder | 19050728 | CNVD |
Schizophrenia | 19348701 | CNVD |
Attention deficit hyperactivity disorder | 19097825 | CNVD |
Autism | 20964600 | CNVD |
Schizophrenia | 19955444 | CNVD |
Schizophrenia | 18990708 | CNVD |
Schizophrenia | 19571808 | CNVD |
Breast cancer | 20409316 | CNVD |
Severe combined immunodeficiency | 19097825 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Autism | 18522746 | CNVD |
Wilms tumour | 21544195 | CNVD |
Cancer | 20164920 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Breast cancer | 21364760 | CNVD |
Renal cell carcinoma | 18194544 | CNVD |
Lung cancer | 18438408 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Breast cancer | 21509527 | CNVD |
Schizophrenia | 20967226 | CNVD |
Williams Syndrome | 20824207 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Schizophrenia | 23813976 | CNVD |
Bipolar disorder | 19214233 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Rett syndrome | 21593744 | CNVD |
Autism | 19287141 | CNVD |
Prostate cancer | 18632612 | CNVD |
Cancer | 20164919 | CNVD |
Breast cancer | 22522925 | CNVD |
Autism | 18414403 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:34407600-34409200 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
2 | chr16:34408200-34409000 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
3 | chr16:34408400-34409000 | ZNF genes & repeats | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
4 | chr16:34409000-34410800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
5 | chr16:34409200-34410600 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
6 | chr16:34410600-34411600 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
7 | chr16:34410800-34411600 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
8 | chr16:34411200-34411400 | Enhancers | Right Atrium | heart |
9 | chr16:34415000-34419400 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
10 | chr16:34416200-34416400 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
11 | chr16:34416200-34417400 | ZNF genes & repeats | Fetal Muscle Trunk | muscle |
12 | chr16:34418800-34419400 | ZNF genes & repeats | iPS-15b Cell Line | embryonic stem cell |
13 | chr16:34419600-34422800 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
14 | chr16:34420000-34422200 | ZNF genes & repeats | Foreskin Melanocyte Primary Cells skin01 | Skin |
15 | chr16:34420400-34420800 | ZNF genes & repeats | iPS-15b Cell Line | embryonic stem cell |
16 | chr16:34421000-34421200 | ZNF genes & repeats | Foreskin Fibroblast Primary Cells skin02 | Skin |
17 | chr16:34423000-34423200 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
18 | chr16:34429200-34433000 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
19 | chr16:34429400-34429600 | Bivalent/Poised TSS | ES-I3 Cell Line | embryonic stem cell |
20 | chr16:34429400-34430400 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
21 | chr16:34432200-34433400 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
22 | chr16:34437400-34438400 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
23 | chr16:34438400-34441200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
24 | chr16:34441200-34442800 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
25 | chr16:34441400-34442600 | Bivalent/Poised TSS | ES-I3 Cell Line | embryonic stem cell |
26 | chr16:34442000-34443200 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
27 | chr16:34442200-34443000 | Active TSS | ES-WA7 Cell Line | embryonic stem cell |
28 | chr16:34442200-34443000 | ZNF genes & repeats | Foreskin Melanocyte Primary Cells skin01 | Skin |
29 | chr16:34442600-34442800 | Active TSS | ES-I3 Cell Line | embryonic stem cell |
30 | chr16:34456000-34456800 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
31 | chr16:34456200-34456400 | ZNF genes & repeats | Gastric | stomach |
32 | chr16:34456200-34456600 | Active TSS | H1 Derived Mesenchymal Stem Cells | ES cell derived |
33 | chr16:34465600-34466200 | Active TSS | ES-I3 Cell Line | embryonic stem cell |
34 | chr16:34465600-34466200 | ZNF genes & repeats | HUES6 Cell Line | embryonic stem cell |
35 | chr16:34466600-34472200 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
36 | chr16:34466800-34467000 | ZNF genes & repeats | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
37 | chr16:34466800-34469400 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
38 | chr16:34467000-34468200 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
39 | chr16:34467000-34470200 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
40 | chr16:34468200-34469400 | ZNF genes & repeats | Brain Germinal Matrix | brain |
41 | chr16:34474800-34476000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
42 | chr16:34478600-34479000 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
43 | chr16:34480400-34481000 | Enhancers | Adipose Nuclei | Adipose |
44 | chr16:34489600-34490400 | ZNF genes & repeats | HUES6 Cell Line | embryonic stem cell |
45 | chr16:34489600-34490800 | Active TSS | ES-I3 Cell Line | embryonic stem cell |
46 | chr16:34489800-34490200 | Active TSS | ES-WA7 Cell Line | embryonic stem cell |
47 | chr16:34492800-34493400 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
48 | chr16:34505000-34507800 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
49 | chr16:34517800-34518400 | ZNF genes & repeats | HUES64 Cell Line | embryonic stem cell |
50 | chr16:34531200-34534000 | Enhancers | HMEC | breast |